Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:04:51 (2258): wrapper (7.7.26015): starting
18:04:51 (2258): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 18:04:51] Arguments: --nthreads 8
[2025-11-20 18:04:51] Threads: 8
[2025-11-20 18:04:51] Checking for CVMFS
[2025-11-20 18:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:04:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:04:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:04:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:04:51] 2.11.2.0 2893 57710 85092 153098 0 81 19245932 20275200 1 130560 0 14562709 99.790 4031025 29798 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 18:04:51] CVMFS is ok
[2025-11-20 18:04:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:04:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:04:51] Further information can be found at the LHC@home message board.
[2025-11-20 18:04:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:04:51] Checking for apptainer binary...
[2025-11-20 18:04:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:04:51] Running /usr/bin/apptainer --version
[2025-11-20 18:04:51] apptainer version 1.3.2-1.el7
[2025-11-20 18:04:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:04:53] c-204-22.aglt2.org
[2025-11-20 18:04:53] apptainer works
[2025-11-20 18:04:53] Set ATHENA_PROC_NUMBER=8
[2025-11-20 18:04:53] Set ATHENA_CORE_NUMBER=8
[2025-11-20 18:04:53] Starting ATLAS job with PandaID=6893858977
[2025-11-20 18:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 06:43:32]  *** The last 200 lines of the pilot log: ***
[2025-11-21 06:43:32] 2025-11-21 11:42:32,349 | INFO     | PID=6761 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 06:43:32] 2025-11-21 11:42:33,213 | INFO     | monitor loop #3344: job 0:6893858977 is in state 'finished'
[2025-11-21 06:43:32] 2025-11-21 11:42:33,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 06:43:32] 2025-11-21 11:42:33,350 | INFO     | time since job start (45442s) is within the limit (172800.0s)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,660 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 06:43:32] 2025-11-21 11:42:34,664 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-21 06:43:32] 2025-11-21 11:42:34,666 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893858977/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,667 | INFO     | extracted standard info from prmon json
[2025-11-21 06:43:32] 2025-11-21 11:42:34,667 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 06:43:32] 2025-11-21 11:42:34,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 06:43:32] 2025-11-21 11:42:34,681 | INFO     | fitting pss+swap vs Time
[2025-11-21 06:43:32] 2025-11-21 11:42:34,682 | INFO     | sum of square deviations: 128217417861.81215
[2025-11-21 06:43:32] 2025-11-21 11:42:34,693 | INFO     | sum of deviations: 832512995507.9924
[2025-11-21 06:43:32] 2025-11-21 11:42:34,694 | INFO     | mean x: 1763702635.577181
[2025-11-21 06:43:32] 2025-11-21 11:42:34,694 | INFO     | mean y: 2859570.4348993287
[2025-11-21 06:43:32] 2025-11-21 11:42:34,694 | INFO     | intersect: -11448824520.662489
[2025-11-21 06:43:32] 2025-11-21 11:42:34,695 | INFO     | chi2: 6.9957550332292975
[2025-11-21 06:43:32] 2025-11-21 11:42:34,696 | INFO     | sum of square deviations: 125653277675.13513
[2025-11-21 06:43:32] 2025-11-21 11:42:34,707 | INFO     | sum of deviations: 1100998040024.594
[2025-11-21 06:43:32] 2025-11-21 11:42:34,708 | INFO     | mean x: 1763702483.0810812
[2025-11-21 06:43:32] 2025-11-21 11:42:34,708 | INFO     | mean y: 2875540.1067567565
[2025-11-21 06:43:32] 2025-11-21 11:42:34,708 | INFO     | intersect: -15451022782.221203
[2025-11-21 06:43:32] 2025-11-21 11:42:34,709 | INFO     | chi2: 3.361154137958994
[2025-11-21 06:43:32] 2025-11-21 11:42:34,709 | INFO     | current chi2=3.361154137958994 (change=51.95437630400478 %)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,710 | INFO     | sum of square deviations: 123123556738.43529
[2025-11-21 06:43:32] 2025-11-21 11:42:34,722 | INFO     | sum of deviations: 1203062379768.3142
[2025-11-21 06:43:32] 2025-11-21 11:42:34,722 | INFO     | mean x: 1763702330.5850341
[2025-11-21 06:43:32] 2025-11-21 11:42:34,722 | INFO     | mean y: 2881689.482993197
[2025-11-21 06:43:32] 2025-11-21 11:42:34,722 | INFO     | intersect: -17230570456.02492
[2025-11-21 06:43:32] 2025-11-21 11:42:34,723 | INFO     | chi2: 2.7052523668195403
[2025-11-21 06:43:32] 2025-11-21 11:42:34,723 | INFO     | current chi2=2.7052523668195403 (change=19.514183051948322 %)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,724 | INFO     | right removable region: 734
[2025-11-21 06:43:32] 2025-11-21 11:42:34,724 | INFO     | sum of square deviations: 125653015375.13515
[2025-11-21 06:43:32] 2025-11-21 11:42:34,736 | INFO     | sum of deviations: 622850892715.7295
[2025-11-21 06:43:32] 2025-11-21 11:42:34,736 | INFO     | mean x: 1763702788.0810812
[2025-11-21 06:43:32] 2025-11-21 11:42:34,736 | INFO     | mean y: 2872018.737837838
[2025-11-21 06:43:32] 2025-11-21 11:42:34,736 | INFO     | intersect: -8739646835.759178
[2025-11-21 06:43:32] 2025-11-21 11:42:34,737 | INFO     | chi2: 4.623630217592418
[2025-11-21 06:43:32] 2025-11-21 11:42:34,737 | INFO     | current chi2=4.623630217592418 (change=33.90806002167699 %)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,738 | INFO     | sum of square deviations: 123123122296.77002
[2025-11-21 06:43:32] 2025-11-21 11:42:34,750 | INFO     | sum of deviations: 566159127480.027
[2025-11-21 06:43:32] 2025-11-21 11:42:34,750 | INFO     | mean x: 1763702940.5823128
[2025-11-21 06:43:32] 2025-11-21 11:42:34,750 | INFO     | mean y: 2875434.925170068
[2025-11-21 06:43:32] 2025-11-21 11:42:34,750 | INFO     | intersect: -8107189509.393055
[2025-11-21 06:43:32] 2025-11-21 11:42:34,751 | INFO     | chi2: 4.535642152592253
[2025-11-21 06:43:32] 2025-11-21 11:42:34,751 | INFO     | current chi2=4.535642152592253 (change=1.903008261027888 %)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,751 | INFO     | left removable region: 20
[2025-11-21 06:43:32] 2025-11-21 11:42:34,752 | INFO     | sum of square deviations: 112868645585.08276
[2025-11-21 06:43:32] 2025-11-21 11:42:34,763 | INFO     | sum of deviations: 868459510771.7782
[2025-11-21 06:43:32] 2025-11-21 11:42:34,763 | INFO     | mean x: 1763702910.0910363
[2025-11-21 06:43:32] 2025-11-21 11:42:34,763 | INFO     | mean y: 2903997.4341736697
[2025-11-21 06:43:32] 2025-11-21 11:42:34,763 | INFO     | intersect: -13567778617.781507
[2025-11-21 06:43:32] 2025-11-21 11:42:34,764 | INFO     | chi2: 0.09814982898316775
[2025-11-21 06:43:32] 2025-11-21 11:42:34,764 | INFO     | current memory leak: 7.69 B/s (using 714 data points, chi2=0.10)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,765 | INFO     | could have reported an average CPU frequency of 2147 MHz (28 samples)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,765 | INFO     | ..............................
[2025-11-21 06:43:32] 2025-11-21 11:42:34,765 | INFO     | . Timing measurements:
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . get job = 0 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . initial setup = 2 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . payload setup = 9 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . stage-in = 0 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . payload execution = 45400 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . stage-out = 3 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | . log creation = 0 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,766 | INFO     | ..............................
[2025-11-21 06:43:32] 2025-11-21 11:42:34,926 | INFO     | 
[2025-11-21 06:43:32] 2025-11-21 11:42:34,926 | INFO     | job summary report
[2025-11-21 06:43:32] 2025-11-21 11:42:34,926 | INFO     | --------------------------------------------------
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | PanDA job id: 6893858977
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | task id: 47523449
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | errors: (none)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | pilot state: finished 
[2025-11-21 06:43:32] 2025-11-21 11:42:34,927 | INFO     | transexitcode: 0
[2025-11-21 06:43:32] 2025-11-21 11:42:34,928 | INFO     | exeerrorcode: 0
[2025-11-21 06:43:32] 2025-11-21 11:42:34,928 | INFO     | exeerrordiag: 
[2025-11-21 06:43:32] 2025-11-21 11:42:34,928 | INFO     | exitcode: 0
[2025-11-21 06:43:32] 2025-11-21 11:42:34,928 | INFO     | exitmsg: OK
[2025-11-21 06:43:32] 2025-11-21 11:42:34,928 | INFO     | cpuconsumptiontime: 351228 s
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | nevents: 1000
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | neventsw: 0
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | pid: 13509
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | pgrp: 13509
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | corecount: 8
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | event service: False
[2025-11-21 06:43:32] 2025-11-21 11:42:34,929 | INFO     | sizes: {0: 2298580, 1: 2298835, 7: 2299097, 12: 2299125, 45414: 2345219, 45418: 2354213, 45419: 2354397, 45427: 2354643}
[2025-11-21 06:43:32] 2025-11-21 11:42:34,930 | INFO     | --------------------------------------------------
[2025-11-21 06:43:32] 2025-11-21 11:42:34,930 | INFO     | 
[2025-11-21 06:43:32] 2025-11-21 11:42:34,930 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 06:43:32] 2025-11-21 11:42:34,958 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,959 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,959 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,959 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,959 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,959 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,960 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,961 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 06:43:32] 2025-11-21 11:42:34,962 | INFO     | job 6893858977 has completed (purged errors)
[2025-11-21 06:43:32] 2025-11-21 11:42:34,962 | INFO     | overall cleanup function is called
[2025-11-21 06:43:32] 2025-11-21 11:42:35,978 | INFO     | --- collectZombieJob: --- 10, [13509]
[2025-11-21 06:43:32] 2025-11-21 11:42:35,979 | INFO     | zombie collector waiting for pid 13509
[2025-11-21 06:43:32] 2025-11-21 11:42:35,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 06:43:32] 2025-11-21 11:42:35,979 | INFO     | collected zombie processes
[2025-11-21 06:43:32] 2025-11-21 11:42:35,979 | INFO     | will attempt to kill all subprocesses of pid=13509
[2025-11-21 06:43:32] 2025-11-21 11:42:36,069 | INFO     | process IDs to be killed: [13509] (in reverse order)
[2025-11-21 06:43:32] 2025-11-21 11:42:36,127 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 06:43:32] 2025-11-21 11:42:36,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 06:43:32] 2025-11-21 11:42:36,132 | INFO     | did not find any defunct processes belonging to 13509
[2025-11-21 06:43:32] 2025-11-21 11:42:36,135 | INFO     | did not find any defunct processes belonging to 13509
[2025-11-21 06:43:32] 2025-11-21 11:42:36,138 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 06:43:32] 2025-11-21 11:42:36,138 | INFO     | ready for new job
[2025-11-21 06:43:32] 2025-11-21 11:42:36,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 06:43:32] 2025-11-21 11:42:36,142 | INFO     | ***************************************
[2025-11-21 06:43:32] 2025-11-21 11:42:36,142 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 06:43:32] 2025-11-21 11:42:36,142 | INFO     | ***************************************
[2025-11-21 06:43:32] 2025-11-21 11:42:36,142 | INFO     | 
[2025-11-21 06:43:32] 2025-11-21 11:42:36,143 | INFO     | architecture information:
[2025-11-21 06:43:32] 2025-11-21 11:42:36,143 | INFO     | executing command: cat /etc/os-release
[2025-11-21 06:43:32] 2025-11-21 11:42:36,162 | INFO     | cat /etc/os-release:
[2025-11-21 06:43:32] NAME="CentOS Linux"
[2025-11-21 06:43:32] VERSION="7 (Core)"
[2025-11-21 06:43:32] ID="centos"
[2025-11-21 06:43:32] ID_LIKE="rhel fedora"
[2025-11-21 06:43:32] VERSION_ID="7"
[2025-11-21 06:43:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 06:43:32] ANSI_COLOR="0;31"
[2025-11-21 06:43:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 06:43:32] HOME_URL="https://www.centos.org/"
[2025-11-21 06:43:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 06:43:32] 
[2025-11-21 06:43:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 06:43:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 06:43:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 06:43:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 06:43:32] 
[2025-11-21 06:43:32] 2025-11-21 11:42:36,162 | INFO     | ***************************************
[2025-11-21 06:43:32] 2025-11-21 11:42:36,666 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 06:43:32] 2025-11-21 11:42:36,686 | INFO     | sufficient remaining disk space (17440964608 B)
[2025-11-21 06:43:32] 2025-11-21 11:42:36,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 06:43:32] 2025-11-21 11:42:36,687 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 06:43:32] 2025-11-21 11:42:36,687 | INFO     | update_server=False
[2025-11-21 06:43:32] 2025-11-21 11:42:36,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 06:43:32] 2025-11-21 11:42:36,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 06:43:32] 2025-11-21 11:42:36,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:43:32] 2025-11-21 11:42:36,722 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:43:32] 2025-11-21 11:42:36,722 | INFO     | aborting loop
[2025-11-21 06:43:32] 2025-11-21 11:42:36,883 | INFO     | all data control threads have been joined
[2025-11-21 06:43:32] 2025-11-21 11:42:37,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 06:43:32] 2025-11-21 11:42:37,538 | INFO     | all payload control threads have been joined
[2025-11-21 06:43:32] 2025-11-21 11:42:37,688 | INFO     | [job] retrieve thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:37,691 | INFO     | [job] queue monitor thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:37,711 | INFO     | [payload] validate_post thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:37,728 | INFO     | [job] job monitor thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:37,817 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:37,889 | INFO     | [data] control thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,069 | INFO     | all job control threads have been joined
[2025-11-21 06:43:32] 2025-11-21 11:42:38,196 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,447 | INFO     | [job] validate thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,479 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,542 | INFO     | [payload] control thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,693 | INFO     | [data] copytool_out thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,818 | INFO     | [payload] failed_post thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:38,849 | INFO     | [data] copytool_in thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:39,074 | INFO     | [job] control thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:42:41,093 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 06:43:32] 2025-11-21 11:43:06,554 | INFO     | PID=6761 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 06:43:32] 2025-11-21 11:43:06,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 06:43:32] 2025-11-21 11:43:06,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 06:43:32] 2025-11-21 11:43:06,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 06:43:32] 2025-11-21 11:43:26,004 | INFO     | [monitor] cgroup control has ended
[2025-11-21 06:43:32] 2025-11-21 11:43:27,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411868743488)>', '<ExcThread(monitor, started 140410919835392)>']
[2025-11-21 06:43:32] 2025-11-21 11:43:27,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 06:43:32] 2025-11-21 11:43:27,659 | INFO     | [monitor] control thread has ended
[2025-11-21 06:43:32] 2025-11-21 11:43:32,447 | INFO     | all workflow threads have been joined
[2025-11-21 06:43:32] 2025-11-21 11:43:32,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 06:43:32] 2025-11-21 11:43:32,448 | INFO     | traces error code: 0
[2025-11-21 06:43:32] 2025-11-21 11:43:32,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 06:43:32] 2025-11-21 11:43:32,559 [wrapper] ==== pilot stdout END ====
[2025-11-21 06:43:32] 2025-11-21 11:43:32,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 06:43:32] 2025-11-21 11:43:32,569 [wrapper] pilotpid: 6761
[2025-11-21 06:43:32] 2025-11-21 11:43:32,574 [wrapper] Pilot exit status: 0
[2025-11-21 06:43:32] 2025-11-21 11:43:32,592 [wrapper] pandaids: 6893858977
[2025-11-21 06:43:32] 2025-11-21 11:43:32,644 [wrapper] cleanup supervisor_pilot  2691 6762
[2025-11-21 06:43:32] 2025-11-21 11:43:32,648 [wrapper] Test setup, not cleaning
[2025-11-21 06:43:32] 2025-11-21 11:43:32,653 [wrapper] apfmon messages muted
[2025-11-21 06:43:32] 2025-11-21 11:43:32,657 [wrapper] ==== wrapper stdout END ====
[2025-11-21 06:43:32] 2025-11-21 11:43:32,662 [wrapper] ==== wrapper stderr END ====
[2025-11-21 06:43:32]  *** Error codes and diagnostics ***
[2025-11-21 06:43:32]     "exeErrorCode": 0,
[2025-11-21 06:43:32]     "exeErrorDiag": "",
[2025-11-21 06:43:32]     "pilotErrorCode": 0,
[2025-11-21 06:43:32]     "pilotErrorDiag": "",
[2025-11-21 06:43:32]  *** Listing of results directory ***
[2025-11-21 06:43:32] total 1314312
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 08:26 queuedata.json
[2025-11-21 06:43:32] -rwx------ 1 boincer umatlas     36292 Nov 20 08:27 runpilot2-wrapper.sh
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas       100 Nov 20 18:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 06:43:32] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 18:04 run_atlas
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas       105 Nov 20 18:04 job.xml
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas 407849076 Nov 20 18:04 EVNT.47493127._000523.pool.root.1
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 18:04 start_atlas.sh
[2025-11-21 06:43:32] drwxrwx--x 2 boincer umatlas      4096 Nov 20 18:04 shared
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas    590104 Nov 20 18:04 input.tar.gz
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas         0 Nov 20 18:04 boinc_lockfile
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas      2786 Nov 20 18:04 pandaJob.out
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas        57 Nov 20 18:04 setup.sh.local
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas    989825 Nov 20 18:05 agis_schedconf.cvmfs.json
[2025-11-21 06:43:32] drwx------ 5 boincer umatlas      4096 Nov 20 18:05 pilot3
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas       533 Nov 21 06:30 boinc_task_state.xml
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas      5912 Nov 21 06:39 init_data.xml
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas 917510348 Nov 21 06:41 HITS.47523449._005228.pool.root.1
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas      1064 Nov 21 06:42 memory_monitor_summary.json
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas        95 Nov 21 06:42 pilot_heartbeat.json
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas   1526164 Nov 21 06:42 agis_ddmendpoints.agis.ALL.json
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas   2005364 Nov 21 06:42 log.47523449._005228.job.log.tgz.1
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas      8673 Nov 21 06:42 heartbeat.json
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 06:43 boinc_mmap_file
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas        29 Nov 21 06:43 wrapper_checkpoint.txt
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas      4745 Nov 21 06:43 pilotlog.txt
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas   6281601 Nov 21 06:43 log.47523449._005228.job.log.1
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas       353 Nov 21 06:43 output.list
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas       620 Nov 21 06:43 runtime_log
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas   8304640 Nov 21 06:43 result.tar.gz
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas      9343 Nov 21 06:43 runtime_log.err
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas       668 Nov 21 06:43 JX8NDmPsJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSwHKDmFsr0Jo.diag
[2025-11-21 06:43:32] -rw-r--r-- 1 boincer umatlas     21413 Nov 21 06:43 stderr.txt
[2025-11-21 06:43:32] HITS file was successfully produced:
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas 917510348 Nov 21 06:41 shared/HITS.pool.root.1
[2025-11-21 06:43:32]  *** Contents of shared directory: ***
[2025-11-21 06:43:32] total 1303012
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas 407849076 Nov 20 18:04 ATLAS.root_0
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 18:04 start_atlas.sh
[2025-11-21 06:43:32] -rw-r--r-- 2 boincer umatlas    590104 Nov 20 18:04 input.tar.gz
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas 917510348 Nov 21 06:41 HITS.pool.root.1
[2025-11-21 06:43:32] -rw------- 1 boincer umatlas   8304640 Nov 21 06:43 result.tar.gz
06:43:34 (2258): run_atlas exited; CPU time 347455.944022
06:43:34 (2258): called boinc_finish(0)

</stderr_txt>
]]>

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