Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:43:10 (2768135): wrapper (7.7.26015): starting
23:43:10 (2768135): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 23:43:10] Arguments: --nthreads 3
[2025-11-20 23:43:10] Threads: 3
[2025-11-20 23:43:10] Checking for CVMFS
[2025-11-20 23:43:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:43:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:43:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:43:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:43:10] 2.9.2.0 16720 590 65232 153098 2 89 34424926 36864000 0 130560 0 8268928 99.999 12536 554 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 23:43:10] CVMFS is ok
[2025-11-20 23:43:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:43:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:43:10] Further information can be found at the LHC@home message board.
[2025-11-20 23:43:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:43:10] Checking for apptainer binary...
[2025-11-20 23:43:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:43:10] Running /usr/bin/apptainer --version
[2025-11-20 23:43:10] apptainer version 1.4.1-1.1
[2025-11-20 23:43:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:43:11] thA335
[2025-11-20 23:43:11] apptainer works
[2025-11-20 23:43:11] Set ATHENA_PROC_NUMBER=3
[2025-11-20 23:43:11] Set ATHENA_CORE_NUMBER=3
[2025-11-20 23:43:11] Starting ATLAS job with PandaID=6893848299
[2025-11-20 23:43:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:47:30]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:47:30] 2025-11-20 22:46:39,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:47:30] 2025-11-20 22:46:39,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:30] 2025-11-20 22:46:39,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:47:30] 2025-11-20 22:46:39,553 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 23:47:30] 2025-11-20 22:46:39,553 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 23:47:30] 2025-11-20 22:46:39,554 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:30] 2025-11-20 22:46:39,555 | INFO     | will abort loop
[2025-11-20 23:47:30] 2025-11-20 22:46:39,842 | INFO     | all data control threads have been joined
[2025-11-20 23:47:30] 2025-11-20 22:46:40,143 | INFO     | all payload control threads have been joined
[2025-11-20 23:47:30] 2025-11-20 22:46:40,319 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,323 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,561 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,717 | INFO     | all job control threads have been joined
[2025-11-20 23:47:30] 2025-11-20 22:46:40,757 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,848 | INFO     | [data] control thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,894 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,904 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:40,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,114 | INFO     | [job] validate thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,149 | INFO     | [payload] control thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,206 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,250 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,374 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,487 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,723 | INFO     | [job] control thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:46:41,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:47:30] 2025-11-20 22:46:45,825 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:47:30] 2025-11-20 22:47:09,224 | INFO     | PID=2771875 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:47:30] 2025-11-20 22:47:09,224 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:47:30] 2025-11-20 22:47:09,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:47:30] 2025-11-20 22:47:09,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:47:30] 2025-11-20 22:47:24,267 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:47:30] 2025-11-20 22:47:25,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704753768256)>', '<ExcThread(monitor, started 139703726626560)>']
[2025-11-20 23:47:30] 2025-11-20 22:47:26,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:47:30] 2025-11-20 22:47:26,315 | INFO     | [monitor] control thread has ended
[2025-11-20 23:47:30] 2025-11-20 22:47:30,696 | INFO     | all workflow threads have been joined
[2025-11-20 23:47:30] 2025-11-20 22:47:30,696 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:47:30] 2025-11-20 22:47:30,697 | INFO     | traces error code: 0
[2025-11-20 23:47:30] 2025-11-20 22:47:30,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:47:30] 2025-11-20 22:47:30,743 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:47:30] 2025-11-20 22:47:30,746 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:47:30] 2025-11-20 22:47:30,750 [wrapper] pilotpid: 2771875
[2025-11-20 23:47:30] 2025-11-20 22:47:30,753 [wrapper] Pilot exit status: 0
[2025-11-20 23:47:30] 2025-11-20 22:47:30,760 [wrapper] pandaids: 6893848299
[2025-11-20 23:47:30] 2025-11-20 22:47:30,776 [wrapper] cleanup supervisor_pilot 2771881 2771876
[2025-11-20 23:47:30] 2025-11-20 22:47:30,778 [wrapper] Test setup, not cleaning
[2025-11-20 23:47:30] 2025-11-20 22:47:30,781 [wrapper] apfmon messages muted
[2025-11-20 23:47:30] 2025-11-20 22:47:30,783 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:47:30] 2025-11-20 22:47:30,785 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:47:30]  *** Error codes and diagnostics ***
[2025-11-20 23:47:30]     "exeErrorCode": 65,
[2025-11-20 23:47:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:47:30]     "pilotErrorCode": 1305,
[2025-11-20 23:47:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:47:30]  *** Listing of results directory ***
[2025-11-20 23:47:30] total 401168
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 23:47:30] -rwx------ 1 boinc boinc     36292 Nov 20 11:32 runpilot2-wrapper.sh
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:32 queuedata.json
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:47:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:43 run_atlas
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:43 job.xml
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc 406589717 Nov 20 23:43 EVNT.47493127._000264.pool.root.1
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc    590099 Nov 20 23:43 input.tar.gz
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:43 start_atlas.sh
[2025-11-20 23:47:30] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:43 shared
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:43 boinc_setup_complete
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      6194 Nov 20 23:43 init_data.xml
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:43 boinc_lockfile
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      2786 Nov 20 23:43 pandaJob.out
[2025-11-20 23:47:30] -rw------- 1 boinc boinc    989825 Nov 20 23:43 agis_schedconf.cvmfs.json
[2025-11-20 23:47:30] -rw------- 1 boinc boinc   1526164 Nov 20 23:43 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:47:30] drwx------ 5 boinc boinc      4096 Nov 20 23:43 pilot3
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc       523 Nov 20 23:44 boinc_task_state.xml
[2025-11-20 23:47:30] -rw------- 1 boinc boinc       954 Nov 20 23:44 memory_monitor_summary.json
[2025-11-20 23:47:30] -rw------- 1 boinc boinc     55812 Nov 20 23:44 log.47523449._002640.job.log.tgz.1
[2025-11-20 23:47:30] -rw------- 1 boinc boinc        95 Nov 20 23:46 pilot_heartbeat.json
[2025-11-20 23:47:30] -rw------- 1 boinc boinc      8400 Nov 20 23:46 heartbeat.json
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:47 boinc_mmap_file
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc        23 Nov 20 23:47 wrapper_checkpoint.txt
[2025-11-20 23:47:30] -rw------- 1 boinc boinc      4938 Nov 20 23:47 pilotlog.txt
[2025-11-20 23:47:30] -rw------- 1 boinc boinc     93682 Nov 20 23:47 log.47523449._002640.job.log.1
[2025-11-20 23:47:30] -rw------- 1 boinc boinc       186 Nov 20 23:47 output.list
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:47 runtime_log
[2025-11-20 23:47:30] -rw------- 1 boinc boinc    174080 Nov 20 23:47 result.tar.gz
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      8744 Nov 20 23:47 runtime_log.err
[2025-11-20 23:47:30] -rw------- 1 boinc boinc       649 Nov 20 23:47 TdiKDmk8Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlUHKDmLhJmdm.diag
[2025-11-20 23:47:30] -rw-r--r-- 1 boinc boinc      7937 Nov 20 23:47 stderr.txt
[2025-11-20 23:47:30] No HITS result produced
[2025-11-20 23:47:30]  *** Contents of shared directory: ***
[2025-11-20 23:47:30] total 397836
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc 406589717 Nov 20 23:43 ATLAS.root_0
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc    590099 Nov 20 23:43 input.tar.gz
[2025-11-20 23:47:30] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:43 start_atlas.sh
[2025-11-20 23:47:30] -rw------- 1 boinc boinc    174080 Nov 20 23:47 result.tar.gz
23:47:32 (2768135): run_atlas exited; CPU time 32.107548
23:47:32 (2768135): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN