Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:35:49 (3169219): wrapper (7.7.26015): starting
07:35:49 (3169219): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 07:35:49] Arguments: --nthreads 4
[2025-11-22 07:35:49] Threads: 4
[2025-11-22 07:35:49] Checking for CVMFS
[2025-11-22 07:35:49] No cvmfs_config command found, will try listing directly
[2025-11-22 07:35:49] CVMFS is ok
[2025-11-22 07:35:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 07:35:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 07:35:49] Further information can be found at the LHC@home message board.
[2025-11-22 07:35:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 07:35:49] Checking for apptainer binary...
[2025-11-22 07:35:49] which: no apptainer in ((null))
[2025-11-22 07:35:49] apptainer is not installed, using version from CVMFS
[2025-11-22 07:35:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 07:35:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-22 07:35:49] apptainer works
[2025-11-22 07:35:49] Set ATHENA_PROC_NUMBER=4
[2025-11-22 07:35:49] Set ATHENA_CORE_NUMBER=4
[2025-11-22 07:35:49] Starting ATLAS job with PandaID=6893849736
[2025-11-22 07:35:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:34:59]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:34:59] 2025-11-22 21:30:50,095 | INFO     | time since job start (53685s) is within the limit (172800.0s)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,464 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 22:34:59] 2025-11-22 21:30:51,482 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2717.9838828125007
[2025-11-22 22:34:59] 2025-11-22 21:30:51,504 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893849736/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,504 | INFO     | extracted standard info from prmon json
[2025-11-22 22:34:59] 2025-11-22 21:30:51,505 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:34:59] 2025-11-22 21:30:51,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:34:59] 2025-11-22 21:30:51,518 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:34:59] 2025-11-22 21:30:51,519 | INFO     | sum of square deviations: 211312836460.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,537 | INFO     | sum of deviations: 696119650397.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,537 | INFO     | mean x: 1763820208.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,537 | INFO     | mean y: 2288576.842045455
[2025-11-22 22:34:59] 2025-11-22 21:30:51,537 | INFO     | intersect: -5808195667.627811
[2025-11-22 22:34:59] 2025-11-22 21:30:51,538 | INFO     | chi2: 3.87970125371906
[2025-11-22 22:34:59] 2025-11-22 21:30:51,539 | INFO     | sum of square deviations: 207731336750.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,556 | INFO     | sum of deviations: 871711062080.0001
[2025-11-22 22:34:59] 2025-11-22 21:30:51,556 | INFO     | mean x: 1763820056.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,556 | INFO     | mean y: 2296043.873142857
[2025-11-22 22:34:59] 2025-11-22 21:30:51,556 | INFO     | intersect: -7399290439.846268
[2025-11-22 22:34:59] 2025-11-22 21:30:51,557 | INFO     | chi2: 1.7393964621416793
[2025-11-22 22:34:59] 2025-11-22 21:30:51,557 | INFO     | current chi2=1.7393964621416793 (change=55.16674227237719 %)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,558 | INFO     | sum of square deviations: 204190535477.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,575 | INFO     | sum of deviations: 859342997289.5001
[2025-11-22 22:34:59] 2025-11-22 21:30:51,575 | INFO     | mean x: 1763819903.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,575 | INFO     | mean y: 2295510.1
[2025-11-22 22:34:59] 2025-11-22 21:30:51,575 | INFO     | intersect: -7420802132.540673
[2025-11-22 22:34:59] 2025-11-22 21:30:51,576 | INFO     | chi2: 1.7334027031315216
[2025-11-22 22:34:59] 2025-11-22 21:30:51,576 | INFO     | current chi2=1.7334027031315216 (change=0.3445884328623833 %)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,576 | INFO     | right removable region: 869
[2025-11-22 22:34:59] 2025-11-22 21:30:51,577 | INFO     | sum of square deviations: 207731336750.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,594 | INFO     | sum of deviations: 555771680211.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,594 | INFO     | mean x: 1763820361.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,594 | INFO     | mean y: 2294538.2685714285
[2025-11-22 22:34:59] 2025-11-22 21:30:51,594 | INFO     | intersect: -4716692115.165855
[2025-11-22 22:34:59] 2025-11-22 21:30:51,595 | INFO     | chi2: 2.247800580732897
[2025-11-22 22:34:59] 2025-11-22 21:30:51,595 | INFO     | current chi2=2.247800580732897 (change=42.06253436193913 %)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,596 | INFO     | sum of square deviations: 204190535477.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,613 | INFO     | sum of deviations: 543326790037.99976
[2025-11-22 22:34:59] 2025-11-22 21:30:51,613 | INFO     | mean x: 1763820513.5
[2025-11-22 22:34:59] 2025-11-22 21:30:51,613 | INFO     | mean y: 2295073.7103448277
[2025-11-22 22:34:59] 2025-11-22 21:30:51,613 | INFO     | intersect: -4691022055.617282
[2025-11-22 22:34:59] 2025-11-22 21:30:51,614 | INFO     | chi2: 2.246844619973107
[2025-11-22 22:34:59] 2025-11-22 21:30:51,614 | INFO     | current chi2=2.246844619973107 (change=0.0425287175376793 %)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,614 | INFO     | left removable region: 20
[2025-11-22 22:34:59] 2025-11-22 21:30:51,615 | INFO     | sum of square deviations: 189758348600.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,623 | INFO     | monitor loop #3643: job 0:6893849736 is in state 'finished'
[2025-11-22 22:34:59] 2025-11-22 21:30:51,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,630 | INFO     | sum of deviations: 694952801192.0004
[2025-11-22 22:34:59] 2025-11-22 21:30:51,630 | INFO     | mean x: 1763820483.0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,630 | INFO     | mean y: 2302387.358068316
[2025-11-22 22:34:59] 2025-11-22 21:30:51,630 | INFO     | intersect: -6457344813.959729
[2025-11-22 22:34:59] 2025-11-22 21:30:51,631 | INFO     | chi2: 0.07785443783573912
[2025-11-22 22:34:59] 2025-11-22 21:30:51,631 | INFO     | current memory leak: 3.66 B/s (using 849 data points, chi2=0.08)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,632 | INFO     | could have reported an average CPU frequency of 2701 MHz (33 samples)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,632 | INFO     | ..............................
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . Timing measurements:
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . get job = 0 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . initial setup = 1 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . payload setup = 8 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . stage-in = 0 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . payload execution = 53643 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . stage-out = 3 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | . log creation = 0 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,633 | INFO     | ..............................
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | 
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | job summary report
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | --------------------------------------------------
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | PanDA job id: 6893849736
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | task id: 47523449
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | errors: (none)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,858 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | pilot state: finished 
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | transexitcode: 0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | exeerrorcode: 0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | exeerrordiag: 
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | exitcode: 0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | exitmsg: OK
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | cpuconsumptiontime: 212561 s
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | nevents: 1000
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | neventsw: 0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | pid: 3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | pgrp: 3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:51,859 | INFO     | corecount: 4
[2025-11-22 22:34:59] 2025-11-22 21:30:51,860 | INFO     | event service: False
[2025-11-22 22:34:59] 2025-11-22 21:30:51,860 | INFO     | sizes: {0: 2298592, 1: 2298847, 8: 2299109, 12: 2299137, 53656: 2351253, 53660: 2360299, 53661: 2360483, 53669: 2360793}
[2025-11-22 22:34:59] 2025-11-22 21:30:51,860 | INFO     | --------------------------------------------------
[2025-11-22 22:34:59] 2025-11-22 21:30:51,860 | INFO     | 
[2025-11-22 22:34:59] 2025-11-22 21:30:51,860 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-22 22:34:59] 2025-11-22 21:30:51,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:34:59] 2025-11-22 21:30:51,893 | INFO     | job 6893849736 has completed (purged errors)
[2025-11-22 22:34:59] 2025-11-22 21:30:51,894 | INFO     | overall cleanup function is called
[2025-11-22 22:34:59] 2025-11-22 21:30:52,910 | INFO     | --- collectZombieJob: --- 10, [3181643]
[2025-11-22 22:34:59] 2025-11-22 21:30:52,910 | INFO     | zombie collector waiting for pid 3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:52,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:34:59] 2025-11-22 21:30:52,911 | INFO     | collected zombie processes
[2025-11-22 22:34:59] 2025-11-22 21:30:52,911 | INFO     | will attempt to kill all subprocesses of pid=3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:53,634 | INFO     | process IDs to be killed: [3181643] (in reverse order)
[2025-11-22 22:34:59] 2025-11-22 21:30:53,859 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:34:59] 2025-11-22 21:30:53,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:34:59] 2025-11-22 21:30:53,888 | INFO     | did not find any defunct processes belonging to 3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:53,918 | INFO     | did not find any defunct processes belonging to 3181643
[2025-11-22 22:34:59] 2025-11-22 21:30:53,920 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:34:59] 2025-11-22 21:30:53,920 | INFO     | ready for new job
[2025-11-22 22:34:59] 2025-11-22 21:30:53,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:34:59] 2025-11-22 21:30:53,925 | INFO     | ***************************************
[2025-11-22 22:34:59] 2025-11-22 21:30:53,926 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:34:59] 2025-11-22 21:30:53,926 | INFO     | ***************************************
[2025-11-22 22:34:59] 2025-11-22 21:30:53,926 | INFO     | 
[2025-11-22 22:34:59] 2025-11-22 21:30:53,934 | INFO     | architecture information:
[2025-11-22 22:34:59] 2025-11-22 21:30:53,934 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:34:59] 2025-11-22 21:30:53,958 | INFO     | cat /etc/os-release:
[2025-11-22 22:34:59] NAME="CentOS Linux"
[2025-11-22 22:34:59] VERSION="7 (Core)"
[2025-11-22 22:34:59] ID="centos"
[2025-11-22 22:34:59] ID_LIKE="rhel fedora"
[2025-11-22 22:34:59] VERSION_ID="7"
[2025-11-22 22:34:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:34:59] ANSI_COLOR="0;31"
[2025-11-22 22:34:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:34:59] HOME_URL="https://www.centos.org/"
[2025-11-22 22:34:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:34:59] 
[2025-11-22 22:34:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:34:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:34:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:34:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:34:59] 
[2025-11-22 22:34:59] 2025-11-22 21:30:53,958 | INFO     | ***************************************
[2025-11-22 22:34:59] 2025-11-22 21:30:54,461 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-22 22:34:59] 2025-11-22 21:30:54,485 | INFO     | sufficient remaining disk space (3304272691200 B)
[2025-11-22 22:34:59] 2025-11-22 21:30:54,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:34:59] 2025-11-22 21:30:54,485 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:34:59] 2025-11-22 21:30:54,485 | INFO     | update_server=False
[2025-11-22 22:34:59] 2025-11-22 21:30:54,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:34:59] 2025-11-22 21:30:54,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:34:59] 2025-11-22 21:30:54,745 | INFO     | all job control threads have been joined
[2025-11-22 22:34:59] 2025-11-22 21:30:54,809 | INFO     | all payload control threads have been joined
[2025-11-22 22:34:59] 2025-11-22 21:30:55,132 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:34:59] 2025-11-22 21:30:55,132 | INFO     | aborting loop
[2025-11-22 22:34:59] 2025-11-22 21:30:55,491 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,523 | INFO     | all data control threads have been joined
[2025-11-22 22:34:59] 2025-11-22 21:30:55,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:34:59] 2025-11-22 21:30:55,686 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,697 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,750 | INFO     | [job] control thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,756 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,757 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:55,814 | INFO     | [payload] control thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,086 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,137 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,531 | INFO     | [data] control thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,637 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:56,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:34:59] 2025-11-22 21:30:56,871 | INFO     | [job] validate thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:57,621 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:57,742 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:30:58,488 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:34:59] 2025-11-22 21:31:24,074 | INFO     | PID=3173618 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 22:34:59] 2025-11-22 21:31:24,075 | INFO     | .. there are 7 such processes running
[2025-11-22 22:34:59] 2025-11-22 21:31:24,075 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:34:59] 2025-11-22 21:31:24,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:34:59] 2025-11-22 21:31:24,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:34:59] 2025-11-22 21:31:30,619 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:34:59] 2025-11-22 21:31:31,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23409119766336)>', '<ExcThread(monitor, started 23408878249728)>']
[2025-11-22 22:34:59] 2025-11-22 21:31:32,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:34:59] 2025-11-22 21:31:32,114 | INFO     | [monitor] control thread has ended
[2025-11-22 22:34:59] 2025-11-22 21:31:36,709 | INFO     | all workflow threads have been joined
[2025-11-22 22:34:59] 2025-11-22 21:31:36,709 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:34:59] 2025-11-22 21:31:36,710 | INFO     | traces error code: 0
[2025-11-22 22:34:59] 2025-11-22 21:31:36,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:34:59] 2025-11-22 21:31:36,905 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:34:59] 2025-11-22 21:31:36,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:34:59] 2025-11-22 21:31:36,911 [wrapper] pilotpid: 3173618
[2025-11-22 22:34:59] 2025-11-22 21:31:36,914 [wrapper] Pilot exit status: 0
[2025-11-22 22:34:59] 2025-11-22 21:31:36,928 [wrapper] pandaids: 6893849736
[2025-11-22 22:34:59] 2025-11-22 21:31:37,099 [wrapper] cleanup supervisor_pilot  288333 3173619
[2025-11-22 22:34:59] 2025-11-22 21:31:37,103 [wrapper] Test setup, not cleaning
[2025-11-22 22:34:59] 2025-11-22 21:31:37,107 [wrapper] apfmon messages muted
[2025-11-22 22:34:59] 2025-11-22 21:31:37,111 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:34:59] 2025-11-22 21:31:37,116 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:34:59]  *** Error codes and diagnostics ***
[2025-11-22 22:34:59]     "exeErrorCode": 0,
[2025-11-22 22:34:59]     "exeErrorDiag": "",
[2025-11-22 22:34:59]     "pilotErrorCode": 0,
[2025-11-22 22:34:59]     "pilotErrorDiag": "",
[2025-11-22 22:34:59]  *** Listing of results directory ***
[2025-11-22 22:34:59] total 1329848
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:00 pilot3.tar.gz
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:02 queuedata.json
[2025-11-22 22:34:59] -rwx------ 1 boinc boinc     36292 Nov 20 12:03 runpilot2-wrapper.sh
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc       100 Nov 22 07:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:34:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 07:35 run_atlas
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc       105 Nov 22 07:35 job.xml
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc      6688 Nov 22 07:35 init_data.xml
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc 412391726 Nov 22 07:35 EVNT.47493127._000303.pool.root.1
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc     15847 Nov 22 07:35 start_atlas.sh
[2025-11-22 22:34:59] drwxrwx--x 2 boinc boinc      4096 Nov 22 07:35 shared
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc    590103 Nov 22 07:35 input.tar.gz
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc         0 Nov 22 07:35 boinc_lockfile
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc      2786 Nov 22 07:35 pandaJob.out
[2025-11-22 22:34:59] -rw------- 1 boinc boinc    989752 Nov 22 07:36 agis_schedconf.cvmfs.json
[2025-11-22 22:34:59] drwx------ 5 boinc boinc      4096 Nov 22 07:36 pilot3
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc       532 Nov 22 22:24 boinc_task_state.xml
[2025-11-22 22:34:59] -rw------- 1 boinc boinc 927324378 Nov 22 22:30 HITS.47523449._003029.pool.root.1
[2025-11-22 22:34:59] -rw------- 1 boinc boinc      1041 Nov 22 22:30 memory_monitor_summary.json
[2025-11-22 22:34:59] -rw------- 1 boinc boinc   1526164 Nov 22 22:30 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:34:59] -rw------- 1 boinc boinc   1628391 Nov 22 22:30 log.47523449._003029.job.log.tgz.1
[2025-11-22 22:34:59] -rw------- 1 boinc boinc        95 Nov 22 22:30 pilot_heartbeat.json
[2025-11-22 22:34:59] -rw------- 1 boinc boinc      8609 Nov 22 22:30 heartbeat.json
[2025-11-22 22:34:59] -rw------- 1 boinc boinc      4835 Nov 22 22:31 pilotlog.txt
[2025-11-22 22:34:59] -rw------- 1 boinc boinc   7431587 Nov 22 22:31 log.47523449._003029.job.log.1
[2025-11-22 22:34:59] -rw------- 1 boinc boinc       353 Nov 22 22:31 output.list
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc       620 Nov 22 22:31 runtime_log
[2025-11-22 22:34:59] -rw------- 1 boinc boinc   9082880 Nov 22 22:31 result.tar.gz
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc      9223 Nov 22 22:31 runtime_log.err
[2025-11-22 22:34:59] -rw------- 1 boinc boinc       670 Nov 22 22:31 l4nLDmmcHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0UGKDmI68Lkn.diag
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc        28 Nov 22 22:34 wrapper_checkpoint.txt
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc      8192 Nov 22 22:34 boinc_mmap_file
[2025-11-22 22:34:59] -rw-r--r-- 1 boinc boinc     21055 Nov 22 22:34 stderr.txt
[2025-11-22 22:34:59] HITS file was successfully produced:
[2025-11-22 22:34:59] -rw------- 1 boinc boinc 927324378 Nov 22 22:30 shared/HITS.pool.root.1
[2025-11-22 22:34:59]  *** Contents of shared directory: ***
[2025-11-22 22:34:59] total 1317796
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc 412391726 Nov 22 07:35 ATLAS.root_0
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc     15847 Nov 22 07:35 start_atlas.sh
[2025-11-22 22:34:59] -rw-r--r-- 2 boinc boinc    590103 Nov 22 07:35 input.tar.gz
[2025-11-22 22:34:59] -rw------- 1 boinc boinc 927324378 Nov 22 22:30 HITS.pool.root.1
[2025-11-22 22:34:59] -rw------- 1 boinc boinc   9082880 Nov 22 22:31 result.tar.gz
22:35:00 (3169219): run_atlas exited; CPU time 215285.235034
22:35:00 (3169219): called boinc_finish(0)

</stderr_txt>
]]>

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