Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:54:29 (3685900): wrapper (7.7.26015): starting
06:54:29 (3685900): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 06:54:29] Arguments: --nthreads 4
[2025-11-26 06:54:29] Threads: 4
[2025-11-26 06:54:29] Checking for CVMFS
[2025-11-26 06:54:29] No cvmfs_config command found, will try listing directly
[2025-11-26 06:54:29] CVMFS is ok
[2025-11-26 06:54:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 06:54:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 06:54:29] Further information can be found at the LHC@home message board.
[2025-11-26 06:54:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 06:54:29] Checking for apptainer binary...
[2025-11-26 06:54:29] which: no apptainer in ((null))
[2025-11-26 06:54:29] apptainer is not installed, using version from CVMFS
[2025-11-26 06:54:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 06:54:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-26 06:54:29] apptainer works
[2025-11-26 06:54:29] Set ATHENA_PROC_NUMBER=4
[2025-11-26 06:54:29] Set ATHENA_CORE_NUMBER=4
[2025-11-26 06:54:29] Starting ATLAS job with PandaID=6893859037
[2025-11-26 06:54:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:10:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:10:27] 2025-11-26 21:07:17,296 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:10:27] 2025-11-26 21:07:17,318 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2724.301468749997
[2025-11-26 22:10:27] 2025-11-26 21:07:17,343 | INFO     | time since job start (54753s) is within the limit (172800.0s)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,344 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893859037/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,345 | INFO     | extracted standard info from prmon json
[2025-11-26 22:10:27] 2025-11-26 21:07:17,345 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:10:27] 2025-11-26 21:07:17,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:10:27] 2025-11-26 21:07:17,360 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:10:27] 2025-11-26 21:07:17,362 | INFO     | sum of square deviations: 223797491008.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,380 | INFO     | sum of deviations: 655818045805.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,380 | INFO     | mean x: 1764163847.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,380 | INFO     | mean y: 2266009.628762542
[2025-11-26 22:10:27] 2025-11-26 21:07:17,380 | INFO     | intersect: -5167454532.850479
[2025-11-26 22:10:27] 2025-11-26 21:07:17,381 | INFO     | chi2: 3.4112058947311086
[2025-11-26 22:10:27] 2025-11-26 21:07:17,382 | INFO     | sum of square deviations: 220075877043.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,403 | INFO     | sum of deviations: 801666227574.5
[2025-11-26 22:10:27] 2025-11-26 21:07:17,403 | INFO     | mean x: 1764163694.5
[2025-11-26 22:10:27] 2025-11-26 21:07:17,403 | INFO     | mean y: 2271978.6378923766
[2025-11-26 22:10:27] 2025-11-26 21:07:17,403 | INFO     | intersect: -6424013686.089356
[2025-11-26 22:10:27] 2025-11-26 21:07:17,404 | INFO     | chi2: 1.9239528737012763
[2025-11-26 22:10:27] 2025-11-26 21:07:17,404 | INFO     | current chi2=1.9239528737012763 (change=43.599039956134526 %)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,405 | INFO     | sum of square deviations: 216395752228.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,423 | INFO     | sum of deviations: 792894078319.0001
[2025-11-26 22:10:27] 2025-11-26 21:07:17,423 | INFO     | mean x: 1764163542.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,423 | INFO     | mean y: 2271615.111612176
[2025-11-26 22:10:27] 2025-11-26 21:07:17,424 | INFO     | intersect: -6461786996.188056
[2025-11-26 22:10:27] 2025-11-26 21:07:17,425 | INFO     | chi2: 1.9233954388247603
[2025-11-26 22:10:27] 2025-11-26 21:07:17,425 | INFO     | current chi2=1.9233954388247603 (change=0.028973416352120075 %)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,425 | INFO     | right removable region: 886
[2025-11-26 22:10:27] 2025-11-26 21:07:17,426 | INFO     | sum of square deviations: 220075877043.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,444 | INFO     | sum of deviations: 495890496217.0001
[2025-11-26 22:10:27] 2025-11-26 21:07:17,444 | INFO     | mean x: 1764163999.5
[2025-11-26 22:10:27] 2025-11-26 21:07:17,444 | INFO     | mean y: 2272549.9349775785
[2025-11-26 22:10:27] 2025-11-26 21:07:17,444 | INFO     | intersect: -3972866265.253257
[2025-11-26 22:10:27] 2025-11-26 21:07:17,445 | INFO     | chi2: 1.580240013866824
[2025-11-26 22:10:27] 2025-11-26 21:07:17,445 | INFO     | current chi2=1.580240013866824 (change=53.67503274113016 %)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,447 | INFO     | sum of square deviations: 216395752228.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,466 | INFO     | sum of deviations: 485807744058.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,466 | INFO     | mean x: 1764164152.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,466 | INFO     | mean y: 2272967.154453213
[2025-11-26 22:10:27] 2025-11-26 21:07:17,466 | INFO     | intersect: -3958269686.7887297
[2025-11-26 22:10:27] 2025-11-26 21:07:17,467 | INFO     | chi2: 1.5790968980669158
[2025-11-26 22:10:27] 2025-11-26 21:07:17,467 | INFO     | current chi2=1.5790968980669158 (change=0.07233811255741054 %)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,468 | INFO     | left removable region: 20
[2025-11-26 22:10:27] 2025-11-26 21:07:17,468 | INFO     | sum of square deviations: 201387041052.5
[2025-11-26 22:10:27] 2025-11-26 21:07:17,483 | INFO     | monitor loop #3688: job 0:6893859037 is in state 'finished'
[2025-11-26 22:10:27] 2025-11-26 21:07:17,488 | INFO     | sum of deviations: 618454269441.0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,488 | INFO     | mean x: 1764164121.5
[2025-11-26 22:10:27] 2025-11-26 21:07:17,489 | INFO     | mean y: 2278788.547344111
[2025-11-26 22:10:27] 2025-11-26 21:07:17,489 | INFO     | intersect: -5415422505.608305
[2025-11-26 22:10:27] 2025-11-26 21:07:17,490 | INFO     | chi2: 0.07309467817081455
[2025-11-26 22:10:27] 2025-11-26 21:07:17,490 | INFO     | current memory leak: 3.07 B/s (using 866 data points, chi2=0.07)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | could have reported an average CPU frequency of 2678 MHz (34 samples)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | ..............................
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | . Timing measurements:
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | . get job = 0 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | . initial setup = 1 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,491 | INFO     | . payload setup = 9 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,492 | INFO     | . stage-in = 0 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,492 | INFO     | . payload execution = 54709 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,492 | INFO     | . stage-out = 2 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,492 | INFO     | . log creation = 0 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,492 | INFO     | ..............................
[2025-11-26 22:10:27] 2025-11-26 21:07:17,587 | INFO     | 
[2025-11-26 22:10:27] 2025-11-26 21:07:17,587 | INFO     | job summary report
[2025-11-26 22:10:27] 2025-11-26 21:07:17,587 | INFO     | --------------------------------------------------
[2025-11-26 22:10:27] 2025-11-26 21:07:17,587 | INFO     | PanDA job id: 6893859037
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | task id: 47523449
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | errors: (none)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | pilot state: finished 
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | transexitcode: 0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | exeerrorcode: 0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | exeerrordiag: 
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | exitcode: 0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | exitmsg: OK
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | cpuconsumptiontime: 216787 s
[2025-11-26 22:10:27] 2025-11-26 21:07:17,588 | INFO     | nevents: 1000
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | neventsw: 0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | pid: 3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | pgrp: 3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | corecount: 4
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | event service: False
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | sizes: {0: 2284276, 1: 2284276, 7: 2284566, 11: 2284594, 54722: 2337050, 54725: 2346068, 54728: 2346252, 54735: 2346498}
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | --------------------------------------------------
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | 
[2025-11-26 22:10:27] 2025-11-26 21:07:17,589 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,623 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:10:27] 2025-11-26 21:07:17,623 | INFO     | job 6893859037 has completed (purged errors)
[2025-11-26 22:10:27] 2025-11-26 21:07:17,623 | INFO     | overall cleanup function is called
[2025-11-26 22:10:27] 2025-11-26 21:07:18,639 | INFO     | --- collectZombieJob: --- 10, [3697793]
[2025-11-26 22:10:27] 2025-11-26 21:07:18,639 | INFO     | zombie collector waiting for pid 3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:18,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:10:27] 2025-11-26 21:07:18,639 | INFO     | collected zombie processes
[2025-11-26 22:10:27] 2025-11-26 21:07:18,639 | INFO     | will attempt to kill all subprocesses of pid=3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:19,327 | INFO     | process IDs to be killed: [3697793] (in reverse order)
[2025-11-26 22:10:27] 2025-11-26 21:07:19,571 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:10:27] 2025-11-26 21:07:19,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:10:27] 2025-11-26 21:07:19,603 | INFO     | did not find any defunct processes belonging to 3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:19,632 | INFO     | did not find any defunct processes belonging to 3697793
[2025-11-26 22:10:27] 2025-11-26 21:07:19,634 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:10:27] 2025-11-26 21:07:19,634 | INFO     | ready for new job
[2025-11-26 22:10:27] 2025-11-26 21:07:19,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:10:27] 2025-11-26 21:07:19,640 | INFO     | ***************************************
[2025-11-26 22:10:27] 2025-11-26 21:07:19,640 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:10:27] 2025-11-26 21:07:19,640 | INFO     | ***************************************
[2025-11-26 22:10:27] 2025-11-26 21:07:19,640 | INFO     | 
[2025-11-26 22:10:27] 2025-11-26 21:07:19,649 | INFO     | architecture information:
[2025-11-26 22:10:27] 2025-11-26 21:07:19,650 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:10:27] 2025-11-26 21:07:19,676 | INFO     | cat /etc/os-release:
[2025-11-26 22:10:27] NAME="CentOS Linux"
[2025-11-26 22:10:27] VERSION="7 (Core)"
[2025-11-26 22:10:27] ID="centos"
[2025-11-26 22:10:27] ID_LIKE="rhel fedora"
[2025-11-26 22:10:27] VERSION_ID="7"
[2025-11-26 22:10:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:10:27] ANSI_COLOR="0;31"
[2025-11-26 22:10:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:10:27] HOME_URL="https://www.centos.org/"
[2025-11-26 22:10:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:10:27] 
[2025-11-26 22:10:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:10:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:10:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:10:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:10:27] 
[2025-11-26 22:10:27] 2025-11-26 21:07:19,676 | INFO     | ***************************************
[2025-11-26 22:10:27] 2025-11-26 21:07:20,179 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-26 22:10:27] 2025-11-26 21:07:20,207 | INFO     | sufficient remaining disk space (3292755132416 B)
[2025-11-26 22:10:27] 2025-11-26 21:07:20,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:10:27] 2025-11-26 21:07:20,208 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:10:27] 2025-11-26 21:07:20,208 | INFO     | update_server=False
[2025-11-26 22:10:27] 2025-11-26 21:07:20,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:10:27] 2025-11-26 21:07:20,418 | INFO     | all data control threads have been joined
[2025-11-26 22:10:27] 2025-11-26 21:07:20,552 | INFO     | all payload control threads have been joined
[2025-11-26 22:10:27] 2025-11-26 21:07:20,764 | INFO     | all job control threads have been joined
[2025-11-26 22:10:27] 2025-11-26 21:07:20,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:10:27] 2025-11-26 21:07:20,993 | INFO     | aborting loop
[2025-11-26 22:10:27] 2025-11-26 21:07:21,213 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,219 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,225 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:10:27] 2025-11-26 21:07:21,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:10:27] 2025-11-26 21:07:21,351 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,424 | INFO     | [data] control thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,558 | INFO     | [payload] control thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,606 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,770 | INFO     | [job] control thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,998 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:21,999 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:22,116 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:22,294 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:22,532 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:22,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:10:27] 2025-11-26 21:07:22,711 | INFO     | [job] validate thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:23,231 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:23,603 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:25,322 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:10:27] 2025-11-26 21:07:51,371 | INFO     | PID=3689896 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 22:10:27] 2025-11-26 21:07:51,371 | INFO     | .. there are 5 such processes running
[2025-11-26 22:10:27] 2025-11-26 21:07:51,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:10:27] 2025-11-26 21:07:51,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:10:27] 2025-11-26 21:07:51,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:10:27] 2025-11-26 21:08:13,250 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:10:27] 2025-11-26 21:08:13,566 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22924870510400)>', '<ExcThread(monitor, started 22924626974464)>']
[2025-11-26 22:10:27] 2025-11-26 21:08:14,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:10:27] 2025-11-26 21:08:14,469 | INFO     | [monitor] control thread has ended
[2025-11-26 22:10:27] 2025-11-26 21:08:18,591 | INFO     | all workflow threads have been joined
[2025-11-26 22:10:27] 2025-11-26 21:08:18,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:10:27] 2025-11-26 21:08:18,591 | INFO     | traces error code: 0
[2025-11-26 22:10:27] 2025-11-26 21:08:18,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:10:27] 2025-11-26 21:08:18,777 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:10:27] 2025-11-26 21:08:18,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:10:27] 2025-11-26 21:08:18,784 [wrapper] pilotpid: 3689896
[2025-11-26 22:10:27] 2025-11-26 21:08:18,788 [wrapper] Pilot exit status: 0
[2025-11-26 22:10:27] 2025-11-26 21:08:18,802 [wrapper] pandaids: 6893859037
[2025-11-26 22:10:27] 2025-11-26 21:08:18,925 [wrapper] cleanup supervisor_pilot  724924 3689897
[2025-11-26 22:10:27] 2025-11-26 21:08:18,928 [wrapper] Test setup, not cleaning
[2025-11-26 22:10:27] 2025-11-26 21:08:18,933 [wrapper] apfmon messages muted
[2025-11-26 22:10:27] 2025-11-26 21:08:18,936 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:10:27] 2025-11-26 21:08:18,939 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:10:27]  *** Error codes and diagnostics ***
[2025-11-26 22:10:27]     "exeErrorCode": 0,
[2025-11-26 22:10:27]     "exeErrorDiag": "",
[2025-11-26 22:10:27]     "pilotErrorCode": 0,
[2025-11-26 22:10:27]     "pilotErrorDiag": "",
[2025-11-26 22:10:27]  *** Listing of results directory ***
[2025-11-26 22:10:27] total 1308876
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:25 queuedata.json
[2025-11-26 22:10:27] -rwx------ 1 boinc boinc     36292 Nov 20 14:25 runpilot2-wrapper.sh
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc       100 Nov 26 06:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:10:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 06:54 run_atlas
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc       105 Nov 26 06:54 job.xml
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc      6688 Nov 26 06:54 init_data.xml
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc 409156522 Nov 26 06:54 EVNT.47493127._000528.pool.root.1
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc     15847 Nov 26 06:54 start_atlas.sh
[2025-11-26 22:10:27] drwxrwx--x 2 boinc boinc      4096 Nov 26 06:54 shared
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc    590102 Nov 26 06:54 input.tar.gz
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc         0 Nov 26 06:54 boinc_lockfile
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc      2785 Nov 26 06:54 pandaJob.out
[2025-11-26 22:10:27] -rw------- 1 boinc boinc    991877 Nov 26 06:54 agis_schedconf.cvmfs.json
[2025-11-26 22:10:27] drwx------ 5 boinc boinc      4096 Nov 26 06:54 pilot3
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc       532 Nov 26 22:02 boinc_task_state.xml
[2025-11-26 22:10:27] -rw------- 1 boinc boinc 908848003 Nov 26 22:06 HITS.47523449._005279.pool.root.1
[2025-11-26 22:10:27] -rw------- 1 boinc boinc        95 Nov 26 22:06 pilot_heartbeat.json
[2025-11-26 22:10:27] -rw------- 1 boinc boinc      1040 Nov 26 22:07 memory_monitor_summary.json
[2025-11-26 22:10:27] -rw------- 1 boinc boinc   1516240 Nov 26 22:07 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:10:27] -rw------- 1 boinc boinc   1642087 Nov 26 22:07 log.47523449._005279.job.log.tgz.1
[2025-11-26 22:10:27] -rw------- 1 boinc boinc      8606 Nov 26 22:07 heartbeat.json
[2025-11-26 22:10:27] -rw------- 1 boinc boinc      4836 Nov 26 22:08 pilotlog.txt
[2025-11-26 22:10:27] -rw------- 1 boinc boinc   7540472 Nov 26 22:08 log.47523449._005279.job.log.1
[2025-11-26 22:10:27] -rw------- 1 boinc boinc       353 Nov 26 22:08 output.list
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc       620 Nov 26 22:08 runtime_log
[2025-11-26 22:10:27] -rw------- 1 boinc boinc   9205760 Nov 26 22:08 result.tar.gz
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc      9223 Nov 26 22:08 runtime_log.err
[2025-11-26 22:10:27] -rw------- 1 boinc boinc       670 Nov 26 22:08 H68MDmOqJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdiGKDm2NDsRm.diag
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc        28 Nov 26 22:10 wrapper_checkpoint.txt
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc      8192 Nov 26 22:10 boinc_mmap_file
[2025-11-26 22:10:27] -rw-r--r-- 1 boinc boinc     21064 Nov 26 22:10 stderr.txt
[2025-11-26 22:10:27] HITS file was successfully produced:
[2025-11-26 22:10:27] -rw------- 1 boinc boinc 908848003 Nov 26 22:06 shared/HITS.pool.root.1
[2025-11-26 22:10:27]  *** Contents of shared directory: ***
[2025-11-26 22:10:27] total 1296712
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc 409156522 Nov 26 06:54 ATLAS.root_0
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc     15847 Nov 26 06:54 start_atlas.sh
[2025-11-26 22:10:27] -rw-r--r-- 2 boinc boinc    590102 Nov 26 06:54 input.tar.gz
[2025-11-26 22:10:27] -rw------- 1 boinc boinc 908848003 Nov 26 22:06 HITS.pool.root.1
[2025-11-26 22:10:27] -rw------- 1 boinc boinc   9205760 Nov 26 22:08 result.tar.gz
22:10:28 (3685900): run_atlas exited; CPU time 219740.983206
22:10:28 (3685900): called boinc_finish(0)

</stderr_txt>
]]>

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