Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:40:51 (13457): wrapper (7.7.26015): starting
17:40:51 (13457): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:40:51] Arguments: --nthreads 8
[2025-11-20 17:40:51] Threads: 8
[2025-11-20 17:40:51] Checking for CVMFS
[2025-11-20 17:40:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:40:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:40:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:40:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:40:51] 2.11.2.0 2888 40837 77060 153098 3 81 17452809 20275200 1 130560 0 6345795 99.708 2437084 28739 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 17:40:51] CVMFS is ok
[2025-11-20 17:40:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:40:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:40:51] Further information can be found at the LHC@home message board.
[2025-11-20 17:40:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:40:51] Checking for apptainer binary...
[2025-11-20 17:40:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:40:51] Running /usr/bin/apptainer --version
[2025-11-20 17:40:51] apptainer version 1.3.2-1.el7
[2025-11-20 17:40:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:40:53] c-204-6.aglt2.org
[2025-11-20 17:40:53] apptainer works
[2025-11-20 17:40:53] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:40:53] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:40:53] Starting ATLAS job with PandaID=6893859996
[2025-11-20 17:40:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:47:38]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:47:38] 2025-11-21 10:47:04,891 | INFO     | time since job start (43553s) is within the limit (172800.0s)
[2025-11-21 05:47:38] 2025-11-21 10:47:05,629 | INFO     | monitor loop #3203: job 0:6893859996 is in state 'finished'
[2025-11-21 05:47:38] 2025-11-21 10:47:05,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,029 | INFO     | PID=17262 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 05:47:38] 2025-11-21 10:47:06,309 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 05:47:38] 2025-11-21 10:47:06,313 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-21 05:47:38] 2025-11-21 10:47:06,316 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893859996/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,317 | INFO     | extracted standard info from prmon json
[2025-11-21 05:47:38] 2025-11-21 10:47:06,317 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 05:47:38] 2025-11-21 10:47:06,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 05:47:38] 2025-11-21 10:47:06,332 | INFO     | fitting pss+swap vs Time
[2025-11-21 05:47:38] 2025-11-21 10:47:06,333 | INFO     | sum of square deviations: 112868918736.71307
[2025-11-21 05:47:38] 2025-11-21 10:47:06,344 | INFO     | sum of deviations: 677514633781.1959
[2025-11-21 05:47:38] 2025-11-21 10:47:06,345 | INFO     | mean x: 1763700249.1414566
[2025-11-21 05:47:38] 2025-11-21 10:47:06,345 | INFO     | mean y: 3214650.9089635853
[2025-11-21 05:47:38] 2025-11-21 10:47:06,345 | INFO     | intersect: -10583692194.404865
[2025-11-21 05:47:38] 2025-11-21 10:47:06,346 | INFO     | chi2: 6.8751501548843965
[2025-11-21 05:47:38] 2025-11-21 10:47:06,347 | INFO     | sum of square deviations: 110514437532.14081
[2025-11-21 05:47:38] 2025-11-21 10:47:06,358 | INFO     | sum of deviations: 975304405603.1487
[2025-11-21 05:47:38] 2025-11-21 10:47:06,359 | INFO     | mean x: 1763700096.6459804
[2025-11-21 05:47:38] 2025-11-21 10:47:06,359 | INFO     | mean y: 3233941.3511988716
[2025-11-21 05:47:38] 2025-11-21 10:47:06,359 | INFO     | intersect: -15561650727.41668
[2025-11-21 05:47:38] 2025-11-21 10:47:06,360 | INFO     | chi2: 3.0633128985849107
[2025-11-21 05:47:38] 2025-11-21 10:47:06,360 | INFO     | current chi2=3.0633128985849107 (change=55.44369461649351 %)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,361 | INFO     | sum of square deviations: 108192933690.04004
[2025-11-21 05:47:38] 2025-11-21 10:47:06,372 | INFO     | sum of deviations: 1080274431801.3346
[2025-11-21 05:47:38] 2025-11-21 10:47:06,372 | INFO     | mean x: 1763699944.1505682
[2025-11-21 05:47:38] 2025-11-21 10:47:06,372 | INFO     | mean y: 3240826.4119318184
[2025-11-21 05:47:38] 2025-11-21 10:47:06,372 | INFO     | intersect: -17606781289.207027
[2025-11-21 05:47:38] 2025-11-21 10:47:06,373 | INFO     | chi2: 2.423223163988318
[2025-11-21 05:47:38] 2025-11-21 10:47:06,373 | INFO     | current chi2=2.423223163988318 (change=20.895342911012463 %)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,373 | INFO     | right removable region: 703
[2025-11-21 05:47:38] 2025-11-21 10:47:06,374 | INFO     | sum of square deviations: 110514158152.14073
[2025-11-21 05:47:38] 2025-11-21 10:47:06,385 | INFO     | sum of deviations: 456563613814.8947
[2025-11-21 05:47:38] 2025-11-21 10:47:06,385 | INFO     | mean x: 1763700401.6459804
[2025-11-21 05:47:38] 2025-11-21 10:47:06,385 | INFO     | mean y: 3228937.401974612
[2025-11-21 05:47:38] 2025-11-21 10:47:06,385 | INFO     | intersect: -7283090232.253411
[2025-11-21 05:47:38] 2025-11-21 10:47:06,386 | INFO     | chi2: 4.607241129124089
[2025-11-21 05:47:38] 2025-11-21 10:47:06,386 | INFO     | current chi2=4.607241129124089 (change=32.98704718687619 %)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,387 | INFO     | sum of square deviations: 108192461062.63617
[2025-11-21 05:47:38] 2025-11-21 10:47:06,398 | INFO     | sum of deviations: 412605207988.63495
[2025-11-21 05:47:38] 2025-11-21 10:47:06,398 | INFO     | mean x: 1763700554.1477273
[2025-11-21 05:47:38] 2025-11-21 10:47:06,398 | INFO     | mean y: 3231822.897727273
[2025-11-21 05:47:38] 2025-11-21 10:47:06,398 | INFO     | intersect: -6722856361.310388
[2025-11-21 05:47:38] 2025-11-21 10:47:06,399 | INFO     | chi2: 4.564624710269033
[2025-11-21 05:47:38] 2025-11-21 10:47:06,399 | INFO     | current chi2=4.564624710269033 (change=0.9249878107239038 %)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,400 | INFO     | left removable region: 20
[2025-11-21 05:47:38] 2025-11-21 10:47:06,400 | INFO     | sum of square deviations: 98796620075.51387
[2025-11-21 05:47:38] 2025-11-21 10:47:06,411 | INFO     | sum of deviations: 763980298623.3081
[2025-11-21 05:47:38] 2025-11-21 10:47:06,411 | INFO     | mean x: 1763700523.658858
[2025-11-21 05:47:38] 2025-11-21 10:47:06,411 | INFO     | mean y: 3261691.3704245975
[2025-11-21 05:47:38] 2025-11-21 10:47:06,411 | INFO     | intersect: -13635185167.612072
[2025-11-21 05:47:38] 2025-11-21 10:47:06,412 | INFO     | chi2: 0.06960737681651362
[2025-11-21 05:47:38] 2025-11-21 10:47:06,412 | INFO     | current memory leak: 7.73 B/s (using 683 data points, chi2=0.07)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | could have reported an average CPU frequency of 2183 MHz (27 samples)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | ..............................
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | . Timing measurements:
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | . get job = 0 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | . initial setup = 2 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | . payload setup = 8 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,413 | INFO     | . stage-in = 0 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,414 | INFO     | . payload execution = 43512 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,414 | INFO     | . stage-out = 3 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,414 | INFO     | . log creation = 0 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,414 | INFO     | ..............................
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | 
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | job summary report
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | --------------------------------------------------
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | PanDA job id: 6893859996
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | task id: 47523449
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | errors: (none)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,511 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | pilot state: finished 
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | transexitcode: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | exeerrorcode: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | exeerrordiag: 
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | exitcode: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | exitmsg: OK
[2025-11-21 05:47:38] 2025-11-21 10:47:06,512 | INFO     | cpuconsumptiontime: 337655 s
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | nevents: 1000
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | neventsw: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | pid: 23631
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | pgrp: 23631
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | corecount: 8
[2025-11-21 05:47:38] 2025-11-21 10:47:06,513 | INFO     | event service: False
[2025-11-21 05:47:38] 2025-11-21 10:47:06,514 | INFO     | sizes: {0: 2298750, 6: 2299012, 11: 2299040, 43525: 2344462, 43529: 2353456, 43531: 2353512, 43539: 2353886}
[2025-11-21 05:47:38] 2025-11-21 10:47:06,514 | INFO     | --------------------------------------------------
[2025-11-21 05:47:38] 2025-11-21 10:47:06,514 | INFO     | 
[2025-11-21 05:47:38] 2025-11-21 10:47:06,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 05:47:38] 2025-11-21 10:47:06,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,547 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 05:47:38] 2025-11-21 10:47:06,550 | INFO     | job 6893859996 has completed (purged errors)
[2025-11-21 05:47:38] 2025-11-21 10:47:06,551 | INFO     | overall cleanup function is called
[2025-11-21 05:47:38] 2025-11-21 10:47:07,566 | INFO     | --- collectZombieJob: --- 10, [23631]
[2025-11-21 05:47:38] 2025-11-21 10:47:07,566 | INFO     | zombie collector waiting for pid 23631
[2025-11-21 05:47:38] 2025-11-21 10:47:07,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 05:47:38] 2025-11-21 10:47:07,567 | INFO     | collected zombie processes
[2025-11-21 05:47:38] 2025-11-21 10:47:07,567 | INFO     | will attempt to kill all subprocesses of pid=23631
[2025-11-21 05:47:38] 2025-11-21 10:47:07,659 | INFO     | process IDs to be killed: [23631] (in reverse order)
[2025-11-21 05:47:38] 2025-11-21 10:47:07,726 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:47:38] 2025-11-21 10:47:07,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:47:38] 2025-11-21 10:47:07,730 | INFO     | did not find any defunct processes belonging to 23631
[2025-11-21 05:47:38] 2025-11-21 10:47:07,733 | INFO     | did not find any defunct processes belonging to 23631
[2025-11-21 05:47:38] 2025-11-21 10:47:07,735 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:47:38] 2025-11-21 10:47:07,736 | INFO     | ready for new job
[2025-11-21 05:47:38] 2025-11-21 10:47:07,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:47:38] 2025-11-21 10:47:07,739 | INFO     | ***************************************
[2025-11-21 05:47:38] 2025-11-21 10:47:07,739 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:47:38] 2025-11-21 10:47:07,739 | INFO     | ***************************************
[2025-11-21 05:47:38] 2025-11-21 10:47:07,739 | INFO     | 
[2025-11-21 05:47:38] 2025-11-21 10:47:07,740 | INFO     | architecture information:
[2025-11-21 05:47:38] 2025-11-21 10:47:07,741 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:47:38] 2025-11-21 10:47:07,759 | INFO     | cat /etc/os-release:
[2025-11-21 05:47:38] NAME="CentOS Linux"
[2025-11-21 05:47:38] VERSION="7 (Core)"
[2025-11-21 05:47:38] ID="centos"
[2025-11-21 05:47:38] ID_LIKE="rhel fedora"
[2025-11-21 05:47:38] VERSION_ID="7"
[2025-11-21 05:47:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:47:38] ANSI_COLOR="0;31"
[2025-11-21 05:47:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:47:38] HOME_URL="https://www.centos.org/"
[2025-11-21 05:47:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:47:38] 
[2025-11-21 05:47:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:47:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:47:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:47:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:47:38] 
[2025-11-21 05:47:38] 2025-11-21 10:47:07,760 | INFO     | ***************************************
[2025-11-21 05:47:38] 2025-11-21 10:47:08,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 05:47:38] 2025-11-21 10:47:08,283 | INFO     | sufficient remaining disk space (17465081856 B)
[2025-11-21 05:47:38] 2025-11-21 10:47:08,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:47:38] 2025-11-21 10:47:08,284 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:47:38] 2025-11-21 10:47:08,285 | INFO     | update_server=False
[2025-11-21 05:47:38] 2025-11-21 10:47:08,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:47:38] 2025-11-21 10:47:08,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:47:38] 2025-11-21 10:47:08,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:47:38] 2025-11-21 10:47:08,506 | INFO     | all data control threads have been joined
[2025-11-21 05:47:38] 2025-11-21 10:47:08,815 | INFO     | all job control threads have been joined
[2025-11-21 05:47:38] 2025-11-21 10:47:09,100 | INFO     | all payload control threads have been joined
[2025-11-21 05:47:38] 2025-11-21 10:47:09,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:47:38] 2025-11-21 10:47:09,138 | INFO     | aborting loop
[2025-11-21 05:47:38] 2025-11-21 10:47:09,290 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,291 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,349 | INFO     | [job] validate thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,437 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,511 | INFO     | [data] control thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,515 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:47:38] 2025-11-21 10:47:09,554 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,554 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,789 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:09,821 | INFO     | [job] control thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,003 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,106 | INFO     | [payload] control thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,144 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,291 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,420 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:10,670 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:13,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:47:38] 2025-11-21 10:47:22,984 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:47:38] 2025-11-21 10:47:25,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003250005824)>', '<ExcThread(monitor, started 140002495289088)>']
[2025-11-21 05:47:38] 2025-11-21 10:47:30,078 | INFO     | all workflow threads have been joined
[2025-11-21 05:47:38] 2025-11-21 10:47:30,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:47:38] 2025-11-21 10:47:30,079 | INFO     | traces error code: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:30,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:47:38] 2025-11-21 10:47:38,254 | INFO     | PID=17262 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 05:47:38] 2025-11-21 10:47:38,255 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:47:38] 2025-11-21 10:47:38,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:47:38] 2025-11-21 10:47:38,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:47:38] 2025-11-21 10:47:38,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:47:38] 2025-11-21 10:47:38,255 | INFO     | [monitor] control thread has ended
[2025-11-21 05:47:38] 2025-11-21 10:47:38,366 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:47:38] 2025-11-21 10:47:38,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:47:38] 2025-11-21 10:47:38,375 [wrapper] pilotpid: 17262
[2025-11-21 05:47:38] 2025-11-21 10:47:38,380 [wrapper] Pilot exit status: 0
[2025-11-21 05:47:38] 2025-11-21 10:47:38,397 [wrapper] pandaids: 6893859996
[2025-11-21 05:47:38] 2025-11-21 10:47:38,444 [wrapper] cleanup supervisor_pilot 16191 17263
[2025-11-21 05:47:38] 2025-11-21 10:47:38,449 [wrapper] Test setup, not cleaning
[2025-11-21 05:47:38] 2025-11-21 10:47:38,454 [wrapper] apfmon messages muted
[2025-11-21 05:47:38] 2025-11-21 10:47:38,459 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:47:38] 2025-11-21 10:47:38,464 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:47:38]  *** Error codes and diagnostics ***
[2025-11-21 05:47:38]     "exeErrorCode": 0,
[2025-11-21 05:47:38]     "exeErrorDiag": "",
[2025-11-21 05:47:38]     "pilotErrorCode": 0,
[2025-11-21 05:47:38]     "pilotErrorDiag": "",
[2025-11-21 05:47:38]  *** Listing of results directory ***
[2025-11-21 05:47:38] total 1319244
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 08:29 queuedata.json
[2025-11-21 05:47:38] -rwx------ 1 boincer umatlas     36292 Nov 20 08:30 runpilot2-wrapper.sh
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas       100 Nov 20 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:47:38] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 17:40 run_atlas
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas       105 Nov 20 17:40 job.xml
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas 411364982 Nov 20 17:40 EVNT.47493127._000538.pool.root.1
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 17:40 start_atlas.sh
[2025-11-21 05:47:38] drwxrwx--x 2 boincer umatlas      4096 Nov 20 17:40 shared
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas    590100 Nov 20 17:40 input.tar.gz
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas         0 Nov 20 17:40 boinc_lockfile
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas      2782 Nov 20 17:40 pandaJob.out
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas        57 Nov 20 17:40 setup.sh.local
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas    989825 Nov 20 17:41 agis_schedconf.cvmfs.json
[2025-11-21 05:47:38] drwx------ 5 boincer umatlas      4096 Nov 20 17:41 pilot3
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas       533 Nov 21 05:37 boinc_task_state.xml
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas      5911 Nov 21 05:38 init_data.xml
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas 919707788 Nov 21 05:46 HITS.47523449._005371.pool.root.1
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas      1063 Nov 21 05:46 memory_monitor_summary.json
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas   1526164 Nov 21 05:46 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas   1957410 Nov 21 05:46 log.47523449._005371.job.log.tgz.1
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas        95 Nov 21 05:47 pilot_heartbeat.json
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas      8652 Nov 21 05:47 heartbeat.json
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas        29 Nov 21 05:47 wrapper_checkpoint.txt
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 05:47 boinc_mmap_file
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas       745 Nov 21 05:47 pilotlog.txt
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas   5995462 Nov 21 05:47 log.47523449._005371.job.log.1
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas       353 Nov 21 05:47 output.list
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas       620 Nov 21 05:47 runtime_log
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas   7976960 Nov 21 05:47 result.tar.gz
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas      9338 Nov 21 05:47 runtime_log.err
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas       667 Nov 21 05:47 Pd9NDmLvJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXxHKDmZqBsAn.diag
[2025-11-21 05:47:38] -rw-r--r-- 1 boincer umatlas     21406 Nov 21 05:47 stderr.txt
[2025-11-21 05:47:38] HITS file was successfully produced:
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas 919707788 Nov 21 05:46 shared/HITS.pool.root.1
[2025-11-21 05:47:38]  *** Contents of shared directory: ***
[2025-11-21 05:47:38] total 1308276
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas 411364982 Nov 20 17:40 ATLAS.root_0
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 17:40 start_atlas.sh
[2025-11-21 05:47:38] -rw-r--r-- 2 boincer umatlas    590100 Nov 20 17:40 input.tar.gz
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas 919707788 Nov 21 05:46 HITS.pool.root.1
[2025-11-21 05:47:38] -rw------- 1 boincer umatlas   7976960 Nov 21 05:47 result.tar.gz
05:47:40 (13457): run_atlas exited; CPU time 335465.921058
05:47:40 (13457): called boinc_finish(0)

</stderr_txt>
]]>

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