Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:51:58 (2809773): wrapper (7.7.26015): starting
23:51:58 (2809773): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 23:51:58] Arguments: --nthreads 3
[2025-11-20 23:51:58] Threads: 3
[2025-11-20 23:51:58] Checking for CVMFS
[2025-11-20 23:51:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:51:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:51:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:51:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:51:58] 2.9.2.0 16720 598 65716 153098 2 89 34425414 36864001 0 130560 0 8394202 99.999 12537 554 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 23:51:58] CVMFS is ok
[2025-11-20 23:51:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:51:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:51:58] Further information can be found at the LHC@home message board.
[2025-11-20 23:51:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:51:58] Checking for apptainer binary...
[2025-11-20 23:51:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:51:59] Running /usr/bin/apptainer --version
[2025-11-20 23:51:59] apptainer version 1.4.1-1.1
[2025-11-20 23:51:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:51:59] thA335
[2025-11-20 23:51:59] apptainer works
[2025-11-20 23:51:59] Set ATHENA_PROC_NUMBER=3
[2025-11-20 23:51:59] Set ATHENA_CORE_NUMBER=3
[2025-11-20 23:51:59] Starting ATLAS job with PandaID=6893860085
[2025-11-20 23:51:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:56:16]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:56:16] 2025-11-20 22:55:28,854 | INFO     | sufficient remaining disk space (827218460672 B)
[2025-11-20 23:56:16] 2025-11-20 22:55:28,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:56:16] 2025-11-20 22:55:28,855 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:56:16] 2025-11-20 22:55:28,855 | INFO     | update_server=False
[2025-11-20 23:56:16] 2025-11-20 22:55:28,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:56:16] 2025-11-20 22:55:28,855 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:56:16] 2025-11-20 22:55:28,855 | INFO     | aborting loop
[2025-11-20 23:56:16] 2025-11-20 22:55:29,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:56:16] 2025-11-20 22:55:29,751 | INFO     | all job control threads have been joined
[2025-11-20 23:56:16] 2025-11-20 22:55:29,860 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:29,861 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:29,908 | INFO     | all data control threads have been joined
[2025-11-20 23:56:16] 2025-11-20 22:55:29,912 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:30,153 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:30,310 | INFO     | all payload control threads have been joined
[2025-11-20 23:56:16] 2025-11-20 22:55:30,488 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:30,552 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:30,757 | INFO     | [job] control thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:30,914 | INFO     | [data] control thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,223 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,284 | INFO     | [job] validate thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,316 | INFO     | [payload] control thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,363 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,672 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:31,847 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:56:16] 2025-11-20 22:55:31,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:56:16] 2025-11-20 22:55:32,853 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:35,975 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:56:16] 2025-11-20 22:55:58,948 | INFO     | PID=2813514 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:56:16] 2025-11-20 22:55:58,948 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:56:16] 2025-11-20 22:55:58,949 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:56:16] 2025-11-20 22:55:58,949 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:56:16] 2025-11-20 22:56:10,082 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:56:16] 2025-11-20 22:56:11,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788059019072)>', '<ExcThread(monitor, started 139787778361088)>']
[2025-11-20 23:56:16] 2025-11-20 22:56:12,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:56:16] 2025-11-20 22:56:12,019 | INFO     | [monitor] control thread has ended
[2025-11-20 23:56:16] 2025-11-20 22:56:16,855 | INFO     | all workflow threads have been joined
[2025-11-20 23:56:16] 2025-11-20 22:56:16,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:56:16] 2025-11-20 22:56:16,856 | INFO     | traces error code: 0
[2025-11-20 23:56:16] 2025-11-20 22:56:16,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:56:16] 2025-11-20 22:56:16,901 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:56:16] 2025-11-20 22:56:16,904 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:56:16] 2025-11-20 22:56:16,907 [wrapper] pilotpid: 2813514
[2025-11-20 23:56:16] 2025-11-20 22:56:16,910 [wrapper] Pilot exit status: 0
[2025-11-20 23:56:16] 2025-11-20 22:56:16,917 [wrapper] pandaids: 6893860085
[2025-11-20 23:56:16] 2025-11-20 22:56:16,933 [wrapper] cleanup supervisor_pilot 2813520 2813515
[2025-11-20 23:56:16] 2025-11-20 22:56:16,936 [wrapper] Test setup, not cleaning
[2025-11-20 23:56:16] 2025-11-20 22:56:16,939 [wrapper] apfmon messages muted
[2025-11-20 23:56:16] 2025-11-20 22:56:16,941 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:56:16] 2025-11-20 22:56:16,944 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:56:16]  *** Error codes and diagnostics ***
[2025-11-20 23:56:16]     "exeErrorCode": 65,
[2025-11-20 23:56:16]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:56:16]     "pilotErrorCode": 1305,
[2025-11-20 23:56:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:56:16]  *** Listing of results directory ***
[2025-11-20 23:56:16] total 404132
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:37 queuedata.json
[2025-11-20 23:56:16] -rwx------ 1 boinc boinc     36292 Nov 20 14:39 runpilot2-wrapper.sh
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:56:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:51 run_atlas
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:51 job.xml
[2025-11-20 23:56:16] -rw-r--r-- 2 boinc boinc 409631899 Nov 20 23:51 EVNT.47493127._000543.pool.root.1
[2025-11-20 23:56:16] -rw-r--r-- 2 boinc boinc    590101 Nov 20 23:51 input.tar.gz
[2025-11-20 23:56:16] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:51 start_atlas.sh
[2025-11-20 23:56:16] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:51 shared
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:51 boinc_setup_complete
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      6194 Nov 20 23:51 init_data.xml
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:51 boinc_lockfile
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      2785 Nov 20 23:51 pandaJob.out
[2025-11-20 23:56:16] -rw------- 1 boinc boinc    989825 Nov 20 23:52 agis_schedconf.cvmfs.json
[2025-11-20 23:56:16] -rw------- 1 boinc boinc   1526164 Nov 20 23:52 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:56:16] drwx------ 5 boinc boinc      4096 Nov 20 23:52 pilot3
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc       522 Nov 20 23:53 boinc_task_state.xml
[2025-11-20 23:56:16] -rw------- 1 boinc boinc       964 Nov 20 23:53 memory_monitor_summary.json
[2025-11-20 23:56:16] -rw------- 1 boinc boinc     56094 Nov 20 23:53 log.47523449._005424.job.log.tgz.1
[2025-11-20 23:56:16] -rw------- 1 boinc boinc        95 Nov 20 23:55 pilot_heartbeat.json
[2025-11-20 23:56:16] -rw------- 1 boinc boinc      8402 Nov 20 23:55 heartbeat.json
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc        22 Nov 20 23:56 wrapper_checkpoint.txt
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:56 boinc_mmap_file
[2025-11-20 23:56:16] -rw------- 1 boinc boinc      4752 Nov 20 23:56 pilotlog.txt
[2025-11-20 23:56:16] -rw------- 1 boinc boinc     93647 Nov 20 23:56 log.47523449._005424.job.log.1
[2025-11-20 23:56:16] -rw------- 1 boinc boinc       186 Nov 20 23:56 output.list
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:56 runtime_log
[2025-11-20 23:56:16] -rw------- 1 boinc boinc    174080 Nov 20 23:56 result.tar.gz
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      8744 Nov 20 23:56 runtime_log.err
[2025-11-20 23:56:16] -rw------- 1 boinc boinc       649 Nov 20 23:56 T4kLDmR3Jg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSyHKDmWS1YUo.diag
[2025-11-20 23:56:16] -rw-r--r-- 1 boinc boinc      8123 Nov 20 23:56 stderr.txt
[2025-11-20 23:56:17] No HITS result produced
[2025-11-20 23:56:17]  *** Contents of shared directory: ***
[2025-11-20 23:56:17] total 400804
[2025-11-20 23:56:17] -rw-r--r-- 2 boinc boinc 409631899 Nov 20 23:51 ATLAS.root_0
[2025-11-20 23:56:17] -rw-r--r-- 2 boinc boinc    590101 Nov 20 23:51 input.tar.gz
[2025-11-20 23:56:17] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:51 start_atlas.sh
[2025-11-20 23:56:17] -rw------- 1 boinc boinc    174080 Nov 20 23:56 result.tar.gz
23:56:18 (2809773): run_atlas exited; CPU time 31.755716
23:56:18 (2809773): called boinc_finish(0)

</stderr_txt>
]]>

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