Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:27:28 (88580): wrapper (7.7.26015): starting
14:27:28 (88580): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 14:27:28] Arguments: --nthreads 12
[2025-11-20 14:27:28] Threads: 12
[2025-11-20 14:27:28] Checking for CVMFS
[2025-11-20 14:27:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:27:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:27:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:27:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:27:28] 2.11.5.0 3877898 20245 247844 153098 0 160 24820724 45568000 13050 130560 0 180640863 99.811 105501602 26107 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 14:27:28] CVMFS is ok
[2025-11-20 14:27:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 14:27:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 14:27:28] Further information can be found at the LHC@home message board.
[2025-11-20 14:27:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:27:28] Checking for apptainer binary...
[2025-11-20 14:27:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 14:27:28] Running /usr/bin/apptainer --version
[2025-11-20 14:27:28] apptainer version 1.4.1-1.el9
[2025-11-20 14:27:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:27:28] wns0033.triumf.lcg
[2025-11-20 14:27:28] apptainer works
[2025-11-20 14:27:28] Set ATHENA_PROC_NUMBER=12
[2025-11-20 14:27:28] Set ATHENA_CORE_NUMBER=12
[2025-11-20 14:27:28] Starting ATLAS job with PandaID=6893876388
[2025-11-20 14:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:31:43]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | wrong length of table data, x=[1763677685.0], y=[713.0] (must be same and length>=4)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . Timing measurements:
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . get job = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . initial setup = 2 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload setup = 6 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-in = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload execution = 58 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-out = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . log creation = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893876388/pilotlog.txt
[2025-11-20 14:31:43] 2025-11-20 22:31:01,836 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 14:31:43] - Log from pilotlog.txt -
[2025-11-20 14:31:43] 2025-11-20 22:31:01,821 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893876388/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | INFO     | extracted standard info from prmon json
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | wrong length of table data, x=[1763677685.0], y=[713.0] (must be same and length>=4)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . Timing measurements:
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . get job = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . initial setup = 2 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload setup = 6 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-in = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload execution = 58 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-out = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . log creation = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893876388/pilotlog.txt
[2025-11-20 14:31:43] 2025-11-20 22:31:01,836 | WARNING  | 
[2025-11-20 14:31:43] [begin log extracts]
[2025-11-20 14:31:43] - Log from pilotlog.txt -
[2025-11-20 14:31:43] 2025-11-20 22:31:01,821 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893876388/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | INFO     | extracted standard info from prmon json
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:31:43] 2025-11-20 22:31:01,822 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 14:31:43] 2025-11-20 22:31:01,823 | WARNING  | wrong length of table data, x=[1763677685.0], y=[713.0] (must be same and length>=4)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | could have reported an average CPU frequency of 2638 MHz (4 samples)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,824 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . Timing measurements:
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . get job = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . initial setup = 2 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload setup = 6 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-in = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . payload execution = 58 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . stage-out = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | . log creation = 0 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | ..............................
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 14:31:43] 2025-11-20 22:31:01,825 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893876388/pilotlog.txt
[2025-11-20 14:31:43] [end log extracts]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,836 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,837 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | 
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | job summary report
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | --------------------------------------------------
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | PanDA job id: 6893876388
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | task id: 47523449
[2025-11-20 14:31:43] 2025-11-20 22:31:01,895 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 14:28:54,401 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | pilot state: failed 
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | transexitcode: 65
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | exeerrorcode: 65
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | exitcode: 65
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | cpuconsumptiontime: 44 s
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | nevents: 0
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | neventsw: 0
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | pid: 101661
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | pgrp: 101661
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | corecount: 12
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | event service: False
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | sizes: {0: 2298753, 1: 2298753, 4: 2299043, 11: 2299071, 68: 2324467, 69: 2328913, 189: 2329051}
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | --------------------------------------------------
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | 
[2025-11-20 14:31:43] 2025-11-20 22:31:01,896 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | job 6893876388 has completed (purged errors)
[2025-11-20 14:31:43] 2025-11-20 22:31:01,912 | INFO     | overall cleanup function is called
[2025-11-20 14:31:43] 2025-11-20 22:31:02,919 | INFO     | --- collectZombieJob: --- 10, [101661]
[2025-11-20 14:31:43] 2025-11-20 22:31:02,920 | INFO     | zombie collector waiting for pid 101661
[2025-11-20 14:31:43] 2025-11-20 22:31:02,920 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 14:31:43] 2025-11-20 22:31:02,920 | INFO     | collected zombie processes
[2025-11-20 14:31:43] 2025-11-20 22:31:02,921 | INFO     | will attempt to kill all subprocesses of pid=101661
[2025-11-20 14:31:43] 2025-11-20 22:31:03,093 | INFO     | process IDs to be killed: [101661] (in reverse order)
[2025-11-20 14:31:43] 2025-11-20 22:31:03,157 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 14:31:43] 2025-11-20 22:31:03,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:31:43] 2025-11-20 22:31:03,164 | INFO     | did not find any defunct processes belonging to 101661
[2025-11-20 14:31:43] 2025-11-20 22:31:03,171 | INFO     | did not find any defunct processes belonging to 101661
[2025-11-20 14:31:43] 2025-11-20 22:31:03,172 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:31:43] 2025-11-20 22:31:03,172 | INFO     | ready for new job
[2025-11-20 14:31:43] 2025-11-20 22:31:03,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:31:43] 2025-11-20 22:31:03,173 | INFO     | ***************************************
[2025-11-20 14:31:43] 2025-11-20 22:31:03,173 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:31:43] 2025-11-20 22:31:03,173 | INFO     | ***************************************
[2025-11-20 14:31:43] 2025-11-20 22:31:03,173 | INFO     | 
[2025-11-20 14:31:43] 2025-11-20 22:31:03,175 | INFO     | architecture information:
[2025-11-20 14:31:43] 2025-11-20 22:31:03,176 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:31:43] 2025-11-20 22:31:03,187 | INFO     | cat /etc/os-release:
[2025-11-20 14:31:43] NAME="CentOS Linux"
[2025-11-20 14:31:43] VERSION="7 (Core)"
[2025-11-20 14:31:43] ID="centos"
[2025-11-20 14:31:43] ID_LIKE="rhel fedora"
[2025-11-20 14:31:43] VERSION_ID="7"
[2025-11-20 14:31:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:31:43] ANSI_COLOR="0;31"
[2025-11-20 14:31:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:31:43] HOME_URL="https://www.centos.org/"
[2025-11-20 14:31:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:31:43] 
[2025-11-20 14:31:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:31:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:31:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:31:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:31:43] 
[2025-11-20 14:31:43] 2025-11-20 22:31:03,188 | INFO     | ***************************************
[2025-11-20 14:31:43] 2025-11-20 22:31:03,691 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | INFO     | sufficient remaining disk space (1939192414208 B)
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | INFO     | update_server=False
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | INFO     | aborting loop
[2025-11-20 14:31:43] 2025-11-20 22:31:03,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:31:43] 2025-11-20 22:31:04,287 | INFO     | all payload control threads have been joined
[2025-11-20 14:31:43] 2025-11-20 22:31:04,452 | INFO     | all data control threads have been joined
[2025-11-20 14:31:43] 2025-11-20 22:31:04,548 | INFO     | all job control threads have been joined
[2025-11-20 14:31:43] 2025-11-20 22:31:04,708 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:04,709 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:04,709 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:04,850 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:31:43] 2025-11-20 22:31:05,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:31:43] 2025-11-20 22:31:05,208 | INFO     | [job] validate thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,293 | INFO     | [payload] control thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,326 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,364 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,457 | INFO     | [data] control thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,478 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,481 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,554 | INFO     | [job] control thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:05,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:06,042 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:07,157 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:09,178 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:31:43] 2025-11-20 22:31:34,391 | INFO     | PID=92230 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 14:31:43] 2025-11-20 22:31:34,392 | INFO     | .. there are 21 such processes running
[2025-11-20 14:31:43] 2025-11-20 22:31:34,392 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:31:43] 2025-11-20 22:31:34,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:31:43] 2025-11-20 22:31:34,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:31:43] 2025-11-20 22:31:37,974 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:31:43] 2025-11-20 22:31:38,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666868983616)>', '<ExcThread(monitor, started 139665877227264)>']
[2025-11-20 14:31:43] 2025-11-20 22:31:38,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:31:43] 2025-11-20 22:31:38,414 | INFO     | [monitor] control thread has ended
[2025-11-20 14:31:43] 2025-11-20 22:31:43,334 | INFO     | all workflow threads have been joined
[2025-11-20 14:31:43] 2025-11-20 22:31:43,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:31:43] 2025-11-20 22:31:43,335 | INFO     | traces error code: 0
[2025-11-20 14:31:43] 2025-11-20 22:31:43,335 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:31:43] 2025-11-20 22:31:43,457 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:31:43] 2025-11-20 22:31:43,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:31:43] 2025-11-20 22:31:43,461 [wrapper] pilotpid: 92230
[2025-11-20 14:31:43] 2025-11-20 22:31:43,464 [wrapper] Pilot exit status: 0
[2025-11-20 14:31:43] 2025-11-20 22:31:43,473 [wrapper] pandaids: 6893876388
[2025-11-20 14:31:43] 2025-11-20 22:31:43,516 [wrapper] cleanup supervisor_pilot   92236 92231
[2025-11-20 14:31:43] 2025-11-20 22:31:43,520 [wrapper] Test setup, not cleaning
[2025-11-20 14:31:43] 2025-11-20 22:31:43,523 [wrapper] apfmon messages muted
[2025-11-20 14:31:43] 2025-11-20 22:31:43,525 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:31:43] 2025-11-20 22:31:43,528 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:31:43]  *** Error codes and diagnostics ***
[2025-11-20 14:31:43]     "exeErrorCode": 65,
[2025-11-20 14:31:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 14:31:43]     "pilotErrorCode": 1305,
[2025-11-20 14:31:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 14:31:43]  *** Listing of results directory ***
[2025-11-20 14:31:43] total 407780
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc    576529 Nov 20 08:47 pilot3.tar.gz
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc      5112 Nov 20 08:53 queuedata.json
[2025-11-20 14:31:43] -rwx------. 1 boinc boinc     36292 Nov 20 08:53 runpilot2-wrapper.sh
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc       100 Nov 20 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:31:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 14:27 run_atlas
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc       105 Nov 20 14:27 job.xml
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc 413367970 Nov 20 14:27 EVNT.47493127._000752.pool.root.1
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc      6594 Nov 20 14:27 init_data.xml
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 14:27 start_atlas.sh
[2025-11-20 14:31:43] drwxrwx--x. 2 boinc boinc      4096 Nov 20 14:27 shared
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc    590098 Nov 20 14:27 input.tar.gz
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc         0 Nov 20 14:27 boinc_lockfile
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc      2785 Nov 20 14:27 pandaJob.out
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc    989825 Nov 20 14:27 agis_schedconf.cvmfs.json
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc   1526164 Nov 20 14:27 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:31:43] drwx------. 5 boinc boinc      4096 Nov 20 14:27 pilot3
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc       523 Nov 20 14:28 boinc_task_state.xml
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc       978 Nov 20 14:28 memory_monitor_summary.json
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc     48827 Nov 20 14:29 log.47523449._007515.job.log.tgz.1
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc        95 Nov 20 14:30 pilot_heartbeat.json
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc     10320 Nov 20 14:31 heartbeat.json
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc      4821 Nov 20 14:31 pilotlog.txt
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc        23 Nov 20 14:31 wrapper_checkpoint.txt
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc      8192 Nov 20 14:31 boinc_mmap_file
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc     93493 Nov 20 14:31 log.47523449._007515.job.log.1
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc       186 Nov 20 14:31 output.list
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc       620 Nov 20 14:31 runtime_log
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc    163840 Nov 20 14:31 result.tar.gz
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc      8636 Nov 20 14:31 runtime_log.err
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc       645 Nov 20 14:31 RlGMDms5Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7KIKDmiW9ANn.diag
[2025-11-20 14:31:43] -rw-r--r--. 1 boinc boinc     22374 Nov 20 14:31 stderr.txt
[2025-11-20 14:31:43] No HITS result produced
[2025-11-20 14:31:43]  *** Contents of shared directory: ***
[2025-11-20 14:31:43] total 404440
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc 413367970 Nov 20 14:27 ATLAS.root_0
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 14:27 start_atlas.sh
[2025-11-20 14:31:43] -rw-r--r--. 2 boinc boinc    590098 Nov 20 14:27 input.tar.gz
[2025-11-20 14:31:43] -rw-------. 1 boinc boinc    163840 Nov 20 14:31 result.tar.gz
14:31:45 (88580): run_atlas exited; CPU time 41.574505
14:31:45 (88580): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN