Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:32:19 (1739801): wrapper (7.7.26015): starting
03:32:19 (1739801): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 03:32:19] Arguments: --nthreads 4
[2025-11-25 03:32:19] Threads: 4
[2025-11-25 03:32:19] Checking for CVMFS
[2025-11-25 03:32:19] No cvmfs_config command found, will try listing directly
[2025-11-25 03:32:19] CVMFS is ok
[2025-11-25 03:32:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 03:32:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 03:32:19] Further information can be found at the LHC@home message board.
[2025-11-25 03:32:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:32:19] Checking for apptainer binary...
[2025-11-25 03:32:19] which: no apptainer in ((null))
[2025-11-25 03:32:19] apptainer is not installed, using version from CVMFS
[2025-11-25 03:32:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:32:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-25 03:32:19] apptainer works
[2025-11-25 03:32:19] Set ATHENA_PROC_NUMBER=4
[2025-11-25 03:32:19] Set ATHENA_CORE_NUMBER=4
[2025-11-25 03:32:19] Starting ATLAS job with PandaID=6893859987
[2025-11-25 03:32:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:05:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:05:29] 2025-11-25 18:03:05,492 | INFO     | time since job start (55831s) is within the limit (172800.0s)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,133 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 19:05:29] 2025-11-25 18:03:06,154 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2702.3735234375004
[2025-11-25 19:05:29] 2025-11-25 18:03:06,179 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893859987/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,179 | INFO     | extracted standard info from prmon json
[2025-11-25 19:05:29] 2025-11-25 18:03:06,180 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:05:29] 2025-11-25 18:03:06,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:05:29] 2025-11-25 18:03:06,195 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:05:29] 2025-11-25 18:03:06,196 | INFO     | sum of square deviations: 237542381644.9995
[2025-11-25 19:05:29] 2025-11-25 18:03:06,217 | INFO     | sum of deviations: 507664873678.3591
[2025-11-25 19:05:29] 2025-11-25 18:03:06,217 | INFO     | mean x: 1764065865.001093
[2025-11-25 19:05:29] 2025-11-25 18:03:06,218 | INFO     | mean y: 2282525.6404371583
[2025-11-25 19:05:29] 2025-11-25 18:03:06,218 | INFO     | intersect: -3767799546.9324737
[2025-11-25 19:05:29] 2025-11-25 18:03:06,219 | INFO     | chi2: 4.132551013479466
[2025-11-25 19:05:29] 2025-11-25 18:03:06,220 | INFO     | sum of square deviations: 233669481427.49915
[2025-11-25 19:05:29] 2025-11-25 18:03:06,241 | INFO     | sum of deviations: 705398263273.4033
[2025-11-25 19:05:29] 2025-11-25 18:03:06,242 | INFO     | mean x: 1764065712.5010989
[2025-11-25 19:05:29] 2025-11-25 18:03:06,242 | INFO     | mean y: 2290305.097802198
[2025-11-25 19:05:29] 2025-11-25 18:03:06,242 | INFO     | intersect: -5323047356.870372
[2025-11-25 19:05:29] 2025-11-25 18:03:06,243 | INFO     | chi2: 1.8882521394237033
[2025-11-25 19:05:29] 2025-11-25 18:03:06,243 | INFO     | current chi2=1.8882521394237033 (change=54.30783229863 %)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,244 | INFO     | sum of square deviations: 229838907584.99884
[2025-11-25 19:05:29] 2025-11-25 18:03:06,266 | INFO     | sum of deviations: 711526690891.114
[2025-11-25 19:05:29] 2025-11-25 18:03:06,266 | INFO     | mean x: 1764065560.001105
[2025-11-25 19:05:29] 2025-11-25 18:03:06,266 | INFO     | mean y: 2290547.8872928177
[2025-11-25 19:05:29] 2025-11-25 18:03:06,266 | INFO     | intersect: -5458837611.879899
[2025-11-25 19:05:29] 2025-11-25 18:03:06,267 | INFO     | chi2: 1.8694871250898542
[2025-11-25 19:05:29] 2025-11-25 18:03:06,268 | INFO     | current chi2=1.8694871250898542 (change=0.9937769401694545 %)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,268 | INFO     | right removable region: 904
[2025-11-25 19:05:29] 2025-11-25 18:03:06,269 | INFO     | sum of square deviations: 233669480817.49915
[2025-11-25 19:05:29] 2025-11-25 18:03:06,289 | INFO     | sum of deviations: 350254309116.17975
[2025-11-25 19:05:29] 2025-11-25 18:03:06,289 | INFO     | mean x: 1764066017.5010989
[2025-11-25 19:05:29] 2025-11-25 18:03:06,289 | INFO     | mean y: 2288710.81978022
[2025-11-25 19:05:29] 2025-11-25 18:03:06,289 | INFO     | intersect: -2641923627.1951656
[2025-11-25 19:05:29] 2025-11-25 18:03:06,290 | INFO     | chi2: 2.3682254604421407
[2025-11-25 19:05:29] 2025-11-25 18:03:06,290 | INFO     | current chi2=2.3682254604421407 (change=42.69337625313 %)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,291 | INFO     | sum of square deviations: 229838906364.99884
[2025-11-25 19:05:29] 2025-11-25 18:03:06,311 | INFO     | sum of deviations: 338538674819.3901
[2025-11-25 19:05:29] 2025-11-25 18:03:06,311 | INFO     | mean x: 1764066170.001105
[2025-11-25 19:05:29] 2025-11-25 18:03:06,311 | INFO     | mean y: 2289176.6099447515
[2025-11-25 19:05:29] 2025-11-25 18:03:06,311 | INFO     | intersect: -2596072575.6753364
[2025-11-25 19:05:29] 2025-11-25 18:03:06,312 | INFO     | chi2: 2.365914796543066
[2025-11-25 19:05:29] 2025-11-25 18:03:06,312 | INFO     | current chi2=2.365914796543066 (change=0.09756942223919282 %)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,312 | INFO     | left removable region: 20
[2025-11-25 19:05:29] 2025-11-25 18:03:06,313 | INFO     | sum of square deviations: 214207450550.999
[2025-11-25 19:05:29] 2025-11-25 18:03:06,333 | INFO     | sum of deviations: 539381631423.804
[2025-11-25 19:05:29] 2025-11-25 18:03:06,333 | INFO     | mean x: 1764066139.5011313
[2025-11-25 19:05:29] 2025-11-25 18:03:06,333 | INFO     | mean y: 2297361.6957013574
[2025-11-25 19:05:29] 2025-11-25 18:03:06,334 | INFO     | intersect: -4439681056.030136
[2025-11-25 19:05:29] 2025-11-25 18:03:06,335 | INFO     | chi2: 0.08183619904065542
[2025-11-25 19:05:29] 2025-11-25 18:03:06,335 | INFO     | current memory leak: 2.52 B/s (using 884 data points, chi2=0.08)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | could have reported an average CPU frequency of 2677 MHz (34 samples)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | ..............................
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . Timing measurements:
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . get job = 0 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . initial setup = 1 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . payload setup = 9 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . stage-in = 0 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . payload execution = 55785 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,336 | INFO     | . stage-out = 4 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,337 | INFO     | . log creation = 0 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,337 | INFO     | ..............................
[2025-11-25 19:05:29] 2025-11-25 18:03:06,479 | INFO     | 
[2025-11-25 19:05:29] 2025-11-25 18:03:06,479 | INFO     | job summary report
[2025-11-25 19:05:29] 2025-11-25 18:03:06,479 | INFO     | --------------------------------------------------
[2025-11-25 19:05:29] 2025-11-25 18:03:06,479 | INFO     | PanDA job id: 6893859987
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | task id: 47523449
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | errors: (none)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | pilot state: finished 
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | transexitcode: 0
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | exeerrorcode: 0
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | exeerrordiag: 
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | exitcode: 0
[2025-11-25 19:05:29] 2025-11-25 18:03:06,480 | INFO     | exitmsg: OK
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | cpuconsumptiontime: 220722 s
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | nevents: 1000
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | neventsw: 0
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | pid: 1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | pgrp: 1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | corecount: 4
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | event service: False
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | sizes: {0: 2283481, 1: 2284349, 8: 2284611, 12: 2284639, 55799: 2337431, 55804: 2346666, 55815: 2346856}
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | --------------------------------------------------
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | 
[2025-11-25 19:05:29] 2025-11-25 18:03:06,481 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-25 19:05:29] 2025-11-25 18:03:06,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:05:29] 2025-11-25 18:03:06,514 | INFO     | job 6893859987 has completed (purged errors)
[2025-11-25 19:05:29] 2025-11-25 18:03:06,515 | INFO     | overall cleanup function is called
[2025-11-25 19:05:29] 2025-11-25 18:03:07,531 | INFO     | --- collectZombieJob: --- 10, [1751514]
[2025-11-25 19:05:29] 2025-11-25 18:03:07,532 | INFO     | zombie collector waiting for pid 1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:07,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:05:29] 2025-11-25 18:03:07,532 | INFO     | collected zombie processes
[2025-11-25 19:05:29] 2025-11-25 18:03:07,532 | INFO     | will attempt to kill all subprocesses of pid=1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:08,308 | INFO     | process IDs to be killed: [1751514] (in reverse order)
[2025-11-25 19:05:29] 2025-11-25 18:03:08,566 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:05:29] 2025-11-25 18:03:08,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:05:29] 2025-11-25 18:03:08,606 | INFO     | did not find any defunct processes belonging to 1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:08,642 | INFO     | did not find any defunct processes belonging to 1751514
[2025-11-25 19:05:29] 2025-11-25 18:03:08,644 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:05:29] 2025-11-25 18:03:08,644 | INFO     | ready for new job
[2025-11-25 19:05:29] 2025-11-25 18:03:08,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:05:29] 2025-11-25 18:03:08,650 | INFO     | ***************************************
[2025-11-25 19:05:29] 2025-11-25 18:03:08,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:05:29] 2025-11-25 18:03:08,650 | INFO     | ***************************************
[2025-11-25 19:05:29] 2025-11-25 18:03:08,651 | INFO     | 
[2025-11-25 19:05:29] 2025-11-25 18:03:08,659 | INFO     | architecture information:
[2025-11-25 19:05:29] 2025-11-25 18:03:08,660 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:05:29] 2025-11-25 18:03:08,680 | INFO     | cat /etc/os-release:
[2025-11-25 19:05:29] NAME="CentOS Linux"
[2025-11-25 19:05:29] VERSION="7 (Core)"
[2025-11-25 19:05:29] ID="centos"
[2025-11-25 19:05:29] ID_LIKE="rhel fedora"
[2025-11-25 19:05:29] VERSION_ID="7"
[2025-11-25 19:05:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:05:29] ANSI_COLOR="0;31"
[2025-11-25 19:05:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:05:29] HOME_URL="https://www.centos.org/"
[2025-11-25 19:05:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:05:29] 
[2025-11-25 19:05:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:05:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:05:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:05:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:05:29] 
[2025-11-25 19:05:29] 2025-11-25 18:03:08,681 | INFO     | ***************************************
[2025-11-25 19:05:29] 2025-11-25 18:03:09,184 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-25 19:05:29] 2025-11-25 18:03:09,207 | INFO     | sufficient remaining disk space (3269150638080 B)
[2025-11-25 19:05:29] 2025-11-25 18:03:09,211 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:05:29] 2025-11-25 18:03:09,211 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:05:29] 2025-11-25 18:03:09,211 | INFO     | update_server=False
[2025-11-25 19:05:29] 2025-11-25 18:03:09,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:05:29] 2025-11-25 18:03:09,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:05:29] 2025-11-25 18:03:09,400 | INFO     | all data control threads have been joined
[2025-11-25 19:05:29] 2025-11-25 18:03:09,471 | INFO     | all payload control threads have been joined
[2025-11-25 19:05:29] 2025-11-25 18:03:09,696 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:05:29] 2025-11-25 18:03:09,697 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:05:29] 2025-11-25 18:03:09,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:05:29] 2025-11-25 18:03:09,697 | INFO     | will abort loop
[2025-11-25 19:05:29] 2025-11-25 18:03:10,217 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,405 | INFO     | [data] control thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,477 | INFO     | [payload] control thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,607 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,707 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,753 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:05:29] 2025-11-25 18:03:10,843 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:10,885 | INFO     | all job control threads have been joined
[2025-11-25 19:05:29] 2025-11-25 18:03:10,999 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,217 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,276 | INFO     | [job] validate thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:05:29] 2025-11-25 18:03:11,607 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,637 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,664 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:11,889 | INFO     | [job] control thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:12,452 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:14,760 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:05:29] 2025-11-25 18:03:39,661 | INFO     | PID=1743828 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 19:05:29] 2025-11-25 18:03:39,661 | INFO     | .. there are 5 such processes running
[2025-11-25 19:05:29] 2025-11-25 18:03:39,661 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:05:29] 2025-11-25 18:03:39,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:05:29] 2025-11-25 18:03:39,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:05:29] 2025-11-25 18:04:04,990 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:05:29] 2025-11-25 18:04:06,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23292418549568)>', '<ExcThread(monitor, started 23292182234880)>']
[2025-11-25 19:05:29] 2025-11-25 18:04:06,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:05:29] 2025-11-25 18:04:06,785 | INFO     | [monitor] control thread has ended
[2025-11-25 19:05:29] 2025-11-25 18:04:11,184 | INFO     | all workflow threads have been joined
[2025-11-25 19:05:29] 2025-11-25 18:04:11,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:05:29] 2025-11-25 18:04:11,185 | INFO     | traces error code: 0
[2025-11-25 19:05:29] 2025-11-25 18:04:11,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:05:29] 2025-11-25 18:04:11,406 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:05:29] 2025-11-25 18:04:11,410 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:05:29] 2025-11-25 18:04:11,414 [wrapper] pilotpid: 1743828
[2025-11-25 19:05:29] 2025-11-25 18:04:11,418 [wrapper] Pilot exit status: 0
[2025-11-25 19:05:29] 2025-11-25 18:04:11,433 [wrapper] pandaids: 6893859987
[2025-11-25 19:05:29] 2025-11-25 18:04:11,615 [wrapper] cleanup supervisor_pilot 2913977 1743829
[2025-11-25 19:05:29] 2025-11-25 18:04:11,618 [wrapper] Test setup, not cleaning
[2025-11-25 19:05:29] 2025-11-25 18:04:11,621 [wrapper] apfmon messages muted
[2025-11-25 19:05:29] 2025-11-25 18:04:11,624 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:05:29] 2025-11-25 18:04:11,626 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:05:29]  *** Error codes and diagnostics ***
[2025-11-25 19:05:29]     "exeErrorCode": 0,
[2025-11-25 19:05:29]     "exeErrorDiag": "",
[2025-11-25 19:05:29]     "pilotErrorCode": 0,
[2025-11-25 19:05:29]     "pilotErrorDiag": "",
[2025-11-25 19:05:29]  *** Listing of results directory ***
[2025-11-25 19:05:29] total 1311044
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-25 19:05:29] -rwx------ 1 boinc boinc     36292 Nov 20 14:32 runpilot2-wrapper.sh
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:32 queuedata.json
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc       100 Nov 25 03:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:05:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 03:32 run_atlas
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc       105 Nov 25 03:32 job.xml
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc      6687 Nov 25 03:32 init_data.xml
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc 409367504 Nov 25 03:32 EVNT.47493127._000537.pool.root.1
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc     15847 Nov 25 03:32 start_atlas.sh
[2025-11-25 19:05:29] drwxrwx--x 2 boinc boinc      4096 Nov 25 03:32 shared
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc    590094 Nov 25 03:32 input.tar.gz
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc         0 Nov 25 03:32 boinc_lockfile
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc      2785 Nov 25 03:32 pandaJob.out
[2025-11-25 19:05:29] -rw------- 1 boinc boinc    991801 Nov 25 03:32 agis_schedconf.cvmfs.json
[2025-11-25 19:05:29] drwx------ 5 boinc boinc      4096 Nov 25 03:32 pilot3
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc       532 Nov 25 18:54 boinc_task_state.xml
[2025-11-25 19:05:29] -rw------- 1 boinc boinc 910560834 Nov 25 19:02 HITS.47523449._005362.pool.root.1
[2025-11-25 19:05:29] -rw------- 1 boinc boinc      1041 Nov 25 19:02 memory_monitor_summary.json
[2025-11-25 19:05:29] -rw------- 1 boinc boinc        95 Nov 25 19:02 pilot_heartbeat.json
[2025-11-25 19:05:29] -rw------- 1 boinc boinc   1516240 Nov 25 19:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:05:29] -rw------- 1 boinc boinc   1661226 Nov 25 19:02 log.47523449._005362.job.log.tgz.1
[2025-11-25 19:05:29] -rw------- 1 boinc boinc      8592 Nov 25 19:03 heartbeat.json
[2025-11-25 19:05:29] -rw------- 1 boinc boinc      5022 Nov 25 19:04 pilotlog.txt
[2025-11-25 19:05:29] -rw------- 1 boinc boinc   7670043 Nov 25 19:04 log.47523449._005362.job.log.1
[2025-11-25 19:05:29] -rw------- 1 boinc boinc       353 Nov 25 19:04 output.list
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc       620 Nov 25 19:04 runtime_log
[2025-11-25 19:05:29] -rw------- 1 boinc boinc   9349120 Nov 25 19:04 result.tar.gz
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc      9223 Nov 25 19:04 runtime_log.err
[2025-11-25 19:05:29] -rw------- 1 boinc boinc       670 Nov 25 19:04 2rQODmKxJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4iGKDm6xXqwm.diag
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc        28 Nov 25 19:05 wrapper_checkpoint.txt
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc      8192 Nov 25 19:05 boinc_mmap_file
[2025-11-25 19:05:29] -rw-r--r-- 1 boinc boinc     21079 Nov 25 19:05 stderr.txt
[2025-11-25 19:05:29] HITS file was successfully produced:
[2025-11-25 19:05:29] -rw------- 1 boinc boinc 910560834 Nov 25 19:02 shared/HITS.pool.root.1
[2025-11-25 19:05:29]  *** Contents of shared directory: ***
[2025-11-25 19:05:29] total 1298732
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc 409367504 Nov 25 03:32 ATLAS.root_0
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc     15847 Nov 25 03:32 start_atlas.sh
[2025-11-25 19:05:29] -rw-r--r-- 2 boinc boinc    590094 Nov 25 03:32 input.tar.gz
[2025-11-25 19:05:29] -rw------- 1 boinc boinc 910560834 Nov 25 19:02 HITS.pool.root.1
[2025-11-25 19:05:29] -rw------- 1 boinc boinc   9349120 Nov 25 19:04 result.tar.gz
19:05:30 (1739801): run_atlas exited; CPU time 223689.652570
19:05:30 (1739801): called boinc_finish(0)

</stderr_txt>
]]>

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