Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:30:01 (2705626): wrapper (7.7.26015): starting
23:30:01 (2705626): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 23:30:01] Arguments: --nthreads 3
[2025-11-20 23:30:01] Threads: 3
[2025-11-20 23:30:01] Checking for CVMFS
[2025-11-20 23:30:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:30:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:30:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:30:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:30:02] 2.9.2.0 16720 577 66664 153098 0 85 34423453 36864001 0 130560 0 8080988 99.999 12358 547 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 23:30:02] CVMFS is ok
[2025-11-20 23:30:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:30:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:30:02] Further information can be found at the LHC@home message board.
[2025-11-20 23:30:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:30:02] Checking for apptainer binary...
[2025-11-20 23:30:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:30:02] Running /usr/bin/apptainer --version
[2025-11-20 23:30:02] apptainer version 1.4.1-1.1
[2025-11-20 23:30:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:30:02] thA335
[2025-11-20 23:30:02] apptainer works
[2025-11-20 23:30:02] Set ATHENA_PROC_NUMBER=3
[2025-11-20 23:30:02] Set ATHENA_CORE_NUMBER=3
[2025-11-20 23:30:02] Starting ATLAS job with PandaID=6893857672
[2025-11-20 23:30:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:34:21]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:34:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:34:21] 
[2025-11-20 23:34:21] 2025-11-20 22:33:28,500 | INFO     | ***************************************
[2025-11-20 23:34:21] 2025-11-20 22:33:29,003 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | INFO     | sufficient remaining disk space (827624259584 B)
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | INFO     | update_server=False
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:34:21] 2025-11-20 22:33:29,018 | INFO     | aborting loop
[2025-11-20 23:34:21] 2025-11-20 22:33:29,303 | INFO     | all job control threads have been joined
[2025-11-20 23:34:21] 2025-11-20 22:33:29,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:34:21] 2025-11-20 22:33:30,024 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,025 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,025 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,067 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,117 | INFO     | all data control threads have been joined
[2025-11-20 23:34:21] 2025-11-20 22:33:30,309 | INFO     | [job] control thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,427 | INFO     | all payload control threads have been joined
[2025-11-20 23:34:21] 2025-11-20 22:33:30,525 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:30,930 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,063 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,123 | INFO     | [data] control thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,426 | INFO     | [job] validate thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,432 | INFO     | [payload] control thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,518 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,604 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:31,724 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:32,105 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:34:21] 2025-11-20 22:33:36,112 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:34:21] 2025-11-20 22:33:59,581 | INFO     | PID=2709359 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:34:21] 2025-11-20 22:33:59,581 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:34:21] 2025-11-20 22:33:59,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:34:21] 2025-11-20 22:33:59,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:34:21] 2025-11-20 22:34:14,709 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:34:21] 2025-11-20 22:34:15,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026733004608)>', '<ExcThread(monitor, started 140026218256128)>']
[2025-11-20 23:34:21] 2025-11-20 22:34:16,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:34:21] 2025-11-20 22:34:16,672 | INFO     | [monitor] control thread has ended
[2025-11-20 23:34:21] 2025-11-20 22:34:20,895 | INFO     | all workflow threads have been joined
[2025-11-20 23:34:21] 2025-11-20 22:34:20,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:34:21] 2025-11-20 22:34:20,896 | INFO     | traces error code: 0
[2025-11-20 23:34:21] 2025-11-20 22:34:20,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:34:21] 2025-11-20 22:34:20,941 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:34:21] 2025-11-20 22:34:20,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:34:21] 2025-11-20 22:34:20,948 [wrapper] pilotpid: 2709359
[2025-11-20 23:34:21] 2025-11-20 22:34:20,951 [wrapper] Pilot exit status: 0
[2025-11-20 23:34:21] 2025-11-20 22:34:20,958 [wrapper] pandaids: 6893857672
[2025-11-20 23:34:21] 2025-11-20 22:34:20,974 [wrapper] cleanup supervisor_pilot 2709365 2709360
[2025-11-20 23:34:21] 2025-11-20 22:34:20,977 [wrapper] Test setup, not cleaning
[2025-11-20 23:34:21] 2025-11-20 22:34:20,980 [wrapper] apfmon messages muted
[2025-11-20 23:34:21] 2025-11-20 22:34:20,982 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:34:21] 2025-11-20 22:34:20,985 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:34:21]  *** Error codes and diagnostics ***
[2025-11-20 23:34:21]     "exeErrorCode": 65,
[2025-11-20 23:34:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:34:21]     "pilotErrorCode": 1305,
[2025-11-20 23:34:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 23:34:21]  *** Listing of results directory ***
[2025-11-20 23:34:21] total 403956
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:01 pilot3.tar.gz
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:11 queuedata.json
[2025-11-20 23:34:21] -rwx------ 1 boinc boinc     36292 Nov 20 14:12 runpilot2-wrapper.sh
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:34:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:30 run_atlas
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:30 job.xml
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc 409460005 Nov 20 23:30 EVNT.47493127._000498.pool.root.1
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc    590104 Nov 20 23:30 input.tar.gz
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:30 start_atlas.sh
[2025-11-20 23:34:21] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:30 shared
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:30 boinc_setup_complete
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      6194 Nov 20 23:30 init_data.xml
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:30 boinc_lockfile
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      2785 Nov 20 23:30 pandaJob.out
[2025-11-20 23:34:21] -rw------- 1 boinc boinc    989825 Nov 20 23:30 agis_schedconf.cvmfs.json
[2025-11-20 23:34:21] -rw------- 1 boinc boinc   1526164 Nov 20 23:30 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:34:21] drwx------ 5 boinc boinc      4096 Nov 20 23:30 pilot3
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc       524 Nov 20 23:31 boinc_task_state.xml
[2025-11-20 23:34:21] -rw------- 1 boinc boinc       955 Nov 20 23:31 memory_monitor_summary.json
[2025-11-20 23:34:21] -rw------- 1 boinc boinc     55780 Nov 20 23:31 log.47523449._004973.job.log.tgz.1
[2025-11-20 23:34:21] -rw------- 1 boinc boinc        95 Nov 20 23:33 pilot_heartbeat.json
[2025-11-20 23:34:21] -rw------- 1 boinc boinc      8399 Nov 20 23:33 heartbeat.json
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:34 boinc_mmap_file
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc        23 Nov 20 23:34 wrapper_checkpoint.txt
[2025-11-20 23:34:21] -rw------- 1 boinc boinc      4752 Nov 20 23:34 pilotlog.txt
[2025-11-20 23:34:21] -rw------- 1 boinc boinc     93263 Nov 20 23:34 log.47523449._004973.job.log.1
[2025-11-20 23:34:21] -rw------- 1 boinc boinc       186 Nov 20 23:34 output.list
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:34 runtime_log
[2025-11-20 23:34:21] -rw------- 1 boinc boinc    163840 Nov 20 23:34 result.tar.gz
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      8744 Nov 20 23:34 runtime_log.err
[2025-11-20 23:34:21] -rw------- 1 boinc boinc       649 Nov 20 23:34 0gPMDmNdJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRtHKDmsT18Pm.diag
[2025-11-20 23:34:21] -rw-r--r-- 1 boinc boinc      8413 Nov 20 23:34 stderr.txt
[2025-11-20 23:34:21] No HITS result produced
[2025-11-20 23:34:21]  *** Contents of shared directory: ***
[2025-11-20 23:34:21] total 400624
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc 409460005 Nov 20 23:30 ATLAS.root_0
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc    590104 Nov 20 23:30 input.tar.gz
[2025-11-20 23:34:21] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:30 start_atlas.sh
[2025-11-20 23:34:21] -rw------- 1 boinc boinc    163840 Nov 20 23:34 result.tar.gz
23:34:22 (2705626): run_atlas exited; CPU time 31.998292
23:34:22 (2705626): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN