Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:25:29 (2461982): wrapper (7.7.26015): starting
18:25:29 (2461982): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 18:25:29] Arguments: --nthreads 8
[2025-11-20 18:25:29] Threads: 8
[2025-11-20 18:25:29] Checking for CVMFS
[2025-11-20 18:25:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:25:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:25:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:25:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:25:30] 2.13.3.0 12460 22067 320860 153101 1 232 29405308 32935937 27664 16776704 0 203570400 99.603 206144079 38554 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 18:25:30] CVMFS is ok
[2025-11-20 18:25:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:25:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:25:30] Further information can be found at the LHC@home message board.
[2025-11-20 18:25:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:25:30] Checking for apptainer binary...
[2025-11-20 18:25:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:25:30] Running /usr/bin/apptainer --version
[2025-11-20 18:25:30] apptainer version 1.4.4-1.el9
[2025-11-20 18:25:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:25:31] c7-6-31.aglt2.org
[2025-11-20 18:25:31] apptainer works
[2025-11-20 18:25:31] Set ATHENA_PROC_NUMBER=8
[2025-11-20 18:25:31] Set ATHENA_CORE_NUMBER=8
[2025-11-20 18:25:31] Starting ATLAS job with PandaID=6893846354
[2025-11-20 18:25:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:55:16]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:55:16] 2025-11-21 23:54:32,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:16] 2025-11-21 23:54:34,068 | INFO     | time since job start (88090s) is within the limit (172800.0s)
[2025-11-21 18:55:16] 2025-11-21 23:54:34,758 | INFO     | monitor loop #4615: job 0:6893846354 is in state 'finished'
[2025-11-21 18:55:16] 2025-11-21 23:54:34,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:16] 2025-11-21 23:54:36,079 | INFO     | time since job start (88092s) is within the limit (172800.0s)
[2025-11-21 18:55:16] 2025-11-21 23:54:37,263 | INFO     | monitor loop #4616: job 0:6893846354 is in state 'finished'
[2025-11-21 18:55:16] 2025-11-21 23:54:37,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:16] 2025-11-21 23:54:38,085 | INFO     | time since job start (88094s) is within the limit (172800.0s)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,276 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 18:55:16] 2025-11-21 23:54:39,287 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3343.1381770833327
[2025-11-21 18:55:16] 2025-11-21 23:54:39,372 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893846354/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,373 | INFO     | extracted standard info from prmon json
[2025-11-21 18:55:16] 2025-11-21 23:54:39,373 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:55:16] 2025-11-21 23:54:39,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:55:16] 2025-11-21 23:54:39,438 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:55:16] 2025-11-21 23:54:39,440 | INFO     | sum of square deviations: 931693824322.7369
[2025-11-21 18:55:16] 2025-11-21 23:54:39,489 | INFO     | sum of deviations: 3263484696835.6953
[2025-11-21 18:55:16] 2025-11-21 23:54:39,489 | INFO     | mean x: 1763725259.118503
[2025-11-21 18:55:16] 2025-11-21 23:54:39,489 | INFO     | mean y: 2978657.3000693
[2025-11-21 18:55:16] 2025-11-21 23:54:39,489 | INFO     | intersect: -6174898926.829947
[2025-11-21 18:55:16] 2025-11-21 23:54:39,491 | INFO     | chi2: 14.591277016274537
[2025-11-21 18:55:16] 2025-11-21 23:54:39,492 | INFO     | sum of square deviations: 922042777483.9587
[2025-11-21 18:55:16] 2025-11-21 23:54:39,538 | INFO     | sum of deviations: 3772770878976.466
[2025-11-21 18:55:16] 2025-11-21 23:54:39,538 | INFO     | mean x: 1763725106.6223922
[2025-11-21 18:55:16] 2025-11-21 23:54:39,538 | INFO     | mean y: 2986703.457579972
[2025-11-21 18:55:16] 2025-11-21 23:54:39,538 | INFO     | intersect: -7213739985.668716
[2025-11-21 18:55:16] 2025-11-21 23:54:39,539 | INFO     | chi2: 11.34915378183932
[2025-11-21 18:55:16] 2025-11-21 23:54:39,540 | INFO     | current chi2=11.34915378183932 (change=22.219598948187198 %)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,540 | INFO     | right removable region: 1437
[2025-11-21 18:55:16] 2025-11-21 23:54:39,541 | INFO     | sum of square deviations: 922041792943.9591
[2025-11-21 18:55:16] 2025-11-21 23:54:39,593 | INFO     | sum of deviations: 2694269564227.7837
[2025-11-21 18:55:16] 2025-11-21 23:54:39,593 | INFO     | mean x: 1763725411.6223922
[2025-11-21 18:55:16] 2025-11-21 23:54:39,594 | INFO     | mean y: 2987649.0751043116
[2025-11-21 18:55:16] 2025-11-21 23:54:39,594 | INFO     | intersect: -5150739364.769864
[2025-11-21 18:55:16] 2025-11-21 23:54:39,595 | INFO     | chi2: 10.8380363072985
[2025-11-21 18:55:16] 2025-11-21 23:54:39,595 | INFO     | current chi2=10.8380363072985 (change=25.72249642570571 %)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,596 | INFO     | sum of square deviations: 912456734015.39
[2025-11-21 18:55:16] 2025-11-21 23:54:39,633 | INFO     | sum of deviations: 2286859506401.5894
[2025-11-21 18:55:16] 2025-11-21 23:54:39,635 | INFO     | mean x: 1763725564.1256106
[2025-11-21 18:55:16] 2025-11-21 23:54:39,636 | INFO     | mean y: 2994126.3244940685
[2025-11-21 18:55:16] 2025-11-21 23:54:39,636 | INFO     | intersect: -4417371708.726846
[2025-11-21 18:55:16] 2025-11-21 23:54:39,637 | INFO     | chi2: 8.723163479847432
[2025-11-21 18:55:16] 2025-11-21 23:54:39,637 | INFO     | current chi2=8.723163479847432 (change=19.513431838449183 %)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,637 | INFO     | left removable region: 20
[2025-11-21 18:55:16] 2025-11-21 23:54:39,638 | INFO     | sum of square deviations: 882233250056.1062
[2025-11-21 18:55:16] 2025-11-21 23:54:39,684 | INFO     | sum of deviations: 2741575601684.3647
[2025-11-21 18:55:16] 2025-11-21 23:54:39,685 | INFO     | mean x: 1763725686.1298518
[2025-11-21 18:55:16] 2025-11-21 23:54:39,685 | INFO     | mean y: 3006305.1827805224
[2025-11-21 18:55:16] 2025-11-21 23:54:39,685 | INFO     | intersect: -5477842788.693593
[2025-11-21 18:55:16] 2025-11-21 23:54:39,686 | INFO     | chi2: 4.792436356275672
[2025-11-21 18:55:16] 2025-11-21 23:54:39,686 | INFO     | current memory leak: 3.11 B/s (using 1417 data points, chi2=4.79)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | could have reported an average CPU frequency of 3286 MHz (52 samples)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | ..............................
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | . Timing measurements:
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | . get job = 0 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | . initial setup = 4 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,687 | INFO     | . payload setup = 28 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,688 | INFO     | . stage-in = 0 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,688 | INFO     | . payload execution = 88000 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,688 | INFO     | . stage-out = 6 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,688 | INFO     | . log creation = 1 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,688 | INFO     | ..............................
[2025-11-21 18:55:16] 2025-11-21 23:54:39,778 | INFO     | 
[2025-11-21 18:55:16] 2025-11-21 23:54:39,796 | INFO     | job summary report
[2025-11-21 18:55:16] 2025-11-21 23:54:39,796 | INFO     | --------------------------------------------------
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | PanDA job id: 6893846354
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | task id: 47523449
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | errors: (none)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | pilot state: finished 
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | transexitcode: 0
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | exeerrorcode: 0
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | exeerrordiag: 
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | exitcode: 0
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | exitmsg: OK
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | cpuconsumptiontime: 194219 s
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | nevents: 1000
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | neventsw: 0
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | pid: 2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:39,797 | INFO     | pgrp: 2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | corecount: 8
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | event service: False
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 17: 2299125, 22: 2299153, 88033: 2363497, 88034: 2363624, 88040: 2372730, 88056: 2372920}
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | --------------------------------------------------
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | 
[2025-11-21 18:55:16] 2025-11-21 23:54:39,798 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,901 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:55:16] 2025-11-21 23:54:39,902 | INFO     | job 6893846354 has completed (purged errors)
[2025-11-21 18:55:16] 2025-11-21 23:54:39,903 | INFO     | overall cleanup function is called
[2025-11-21 18:55:16] 2025-11-21 23:54:40,948 | INFO     | --- collectZombieJob: --- 10, [2486886]
[2025-11-21 18:55:16] 2025-11-21 23:54:40,948 | INFO     | zombie collector waiting for pid 2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:40,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:55:16] 2025-11-21 23:54:40,948 | INFO     | collected zombie processes
[2025-11-21 18:55:16] 2025-11-21 23:54:40,948 | INFO     | will attempt to kill all subprocesses of pid=2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:42,232 | INFO     | PID=2472464 has CPU usage=15.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 18:55:16] 2025-11-21 23:54:42,233 | INFO     | .. there are 66 such processes running
[2025-11-21 18:55:16] 2025-11-21 23:54:44,425 | INFO     | process IDs to be killed: [2486886] (in reverse order)
[2025-11-21 18:55:16] 2025-11-21 23:54:44,744 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:55:16] 2025-11-21 23:54:44,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:55:16] 2025-11-21 23:54:44,884 | INFO     | did not find any defunct processes belonging to 2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:44,975 | INFO     | did not find any defunct processes belonging to 2486886
[2025-11-21 18:55:16] 2025-11-21 23:54:44,987 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:55:16] 2025-11-21 23:54:44,988 | INFO     | ready for new job
[2025-11-21 18:55:16] 2025-11-21 23:54:44,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:55:16] 2025-11-21 23:54:44,992 | INFO     | ***************************************
[2025-11-21 18:55:16] 2025-11-21 23:54:44,996 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:55:16] 2025-11-21 23:54:44,996 | INFO     | ***************************************
[2025-11-21 18:55:16] 2025-11-21 23:54:44,996 | INFO     | 
[2025-11-21 18:55:16] 2025-11-21 23:54:45,005 | INFO     | architecture information:
[2025-11-21 18:55:16] 2025-11-21 23:54:45,014 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:55:16] 2025-11-21 23:54:45,176 | INFO     | cat /etc/os-release:
[2025-11-21 18:55:16] NAME="CentOS Linux"
[2025-11-21 18:55:16] VERSION="7 (Core)"
[2025-11-21 18:55:16] ID="centos"
[2025-11-21 18:55:16] ID_LIKE="rhel fedora"
[2025-11-21 18:55:16] VERSION_ID="7"
[2025-11-21 18:55:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:55:16] ANSI_COLOR="0;31"
[2025-11-21 18:55:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:55:16] HOME_URL="https://www.centos.org/"
[2025-11-21 18:55:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:55:16] 
[2025-11-21 18:55:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:55:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:55:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:55:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:55:16] 
[2025-11-21 18:55:16] 2025-11-21 23:54:45,177 | INFO     | ***************************************
[2025-11-21 18:55:16] 2025-11-21 23:54:45,680 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 18:55:16] 2025-11-21 23:54:45,746 | INFO     | sufficient remaining disk space (68154294272 B)
[2025-11-21 18:55:16] 2025-11-21 23:54:45,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:55:16] 2025-11-21 23:54:45,747 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:55:16] 2025-11-21 23:54:45,747 | INFO     | update_server=False
[2025-11-21 18:55:16] 2025-11-21 23:54:45,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:55:16] 2025-11-21 23:54:45,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:55:16] 2025-11-21 23:54:45,858 | INFO     | all data control threads have been joined
[2025-11-21 18:55:16] 2025-11-21 23:54:45,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:55:16] 2025-11-21 23:54:45,966 | INFO     | aborting loop
[2025-11-21 18:55:16] 2025-11-21 23:54:46,615 | INFO     | all payload control threads have been joined
[2025-11-21 18:55:16] 2025-11-21 23:54:46,760 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:46,761 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:46,866 | INFO     | [data] control thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:46,893 | INFO     | all job control threads have been joined
[2025-11-21 18:55:16] 2025-11-21 23:54:46,972 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:46,978 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,119 | INFO     | [job] validate thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,121 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:55:16] 2025-11-21 23:54:47,222 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,484 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,500 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,621 | INFO     | [payload] control thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,900 | INFO     | [job] control thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:47,976 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:48,417 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:55:16] 2025-11-21 23:54:49,150 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:54:52,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:55:16] 2025-11-21 23:55:05,680 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:55:16] 2025-11-21 23:55:06,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140242313504576)>', '<ExcThread(monitor, started 140241537062656)>']
[2025-11-21 18:55:16] 2025-11-21 23:55:11,293 | INFO     | all workflow threads have been joined
[2025-11-21 18:55:16] 2025-11-21 23:55:11,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:55:16] 2025-11-21 23:55:11,294 | INFO     | traces error code: 0
[2025-11-21 18:55:16] 2025-11-21 23:55:11,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:55:16] 2025-11-21 23:55:15,443 | INFO     | PID=2472464 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 18:55:16] 2025-11-21 23:55:15,443 | INFO     | .. there are 66 such processes running
[2025-11-21 18:55:16] 2025-11-21 23:55:15,444 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:55:16] 2025-11-21 23:55:15,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:55:16] 2025-11-21 23:55:15,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:55:16] 2025-11-21 23:55:15,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:55:16] 2025-11-21 23:55:15,444 | INFO     | [monitor] control thread has ended
[2025-11-21 18:55:16] 2025-11-21 23:55:16,052 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:55:16] 2025-11-21 23:55:16,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:55:16] 2025-11-21 23:55:16,080 [wrapper] pilotpid: 2472464
[2025-11-21 18:55:16] 2025-11-21 23:55:16,090 [wrapper] Pilot exit status: 0
[2025-11-21 18:55:16] 2025-11-21 23:55:16,141 [wrapper] pandaids: 6893846354
[2025-11-21 18:55:16] 2025-11-21 23:55:16,368 [wrapper] cleanup supervisor_pilot 4034684 2472465
[2025-11-21 18:55:16] 2025-11-21 23:55:16,371 [wrapper] Test setup, not cleaning
[2025-11-21 18:55:16] 2025-11-21 23:55:16,376 [wrapper] apfmon messages muted
[2025-11-21 18:55:16] 2025-11-21 23:55:16,379 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:55:16] 2025-11-21 23:55:16,381 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:55:16]  *** Error codes and diagnostics ***
[2025-11-21 18:55:16]     "exeErrorCode": 0,
[2025-11-21 18:55:16]     "exeErrorDiag": "",
[2025-11-21 18:55:16]     "pilotErrorCode": 0,
[2025-11-21 18:55:16]     "pilotErrorDiag": "",
[2025-11-21 18:55:16]  *** Listing of results directory ***
[2025-11-21 18:55:16] total 1325524
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 18:55:16] -rwx------. 1 boincer umatlas     36292 Nov 20 05:23 runpilot2-wrapper.sh
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:25 queuedata.json
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas       100 Nov 20 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:55:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 18:25 run_atlas
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas       105 Nov 20 18:25 job.xml
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas 409092564 Nov 20 18:25 EVNT.47493127._000224.pool.root.1
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 18:25 start_atlas.sh
[2025-11-21 18:55:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 18:25 shared
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 18:25 input.tar.gz
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas         0 Nov 20 18:25 boinc_lockfile
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas      2786 Nov 20 18:25 pandaJob.out
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas        57 Nov 20 18:25 setup.sh.local
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas    989817 Nov 20 18:26 agis_schedconf.cvmfs.json
[2025-11-21 18:55:16] drwx------. 5 boincer umatlas      4096 Nov 20 18:26 pilot3
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas       533 Nov 21 18:33 boinc_task_state.xml
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas 919043903 Nov 21 18:53 HITS.47523449._002236.pool.root.1
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas      1062 Nov 21 18:54 memory_monitor_summary.json
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas      6944 Nov 21 18:54 init_data.xml
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas   1526164 Nov 21 18:54 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas   2399572 Nov 21 18:54 log.47523449._002236.job.log.tgz.1
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas      8613 Nov 21 18:54 heartbeat.json
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 18:55 boinc_mmap_file
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas        29 Nov 21 18:55 wrapper_checkpoint.txt
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas        95 Nov 21 18:55 pilot_heartbeat.json
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas       823 Nov 21 18:55 pilotlog.txt
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas  10240544 Nov 21 18:55 log.47523449._002236.job.log.1
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas       353 Nov 21 18:55 output.list
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas       620 Nov 21 18:55 runtime_log
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas  12656640 Nov 21 18:55 result.tar.gz
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas      9338 Nov 21 18:55 runtime_log.err
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas       666 Nov 21 18:55 fTGLDmqzGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpQHKDmY9jtmm.diag
[2025-11-21 18:55:16] -rw-r--r--. 1 boincer umatlas     21645 Nov 21 18:55 stderr.txt
[2025-11-21 18:55:16] HITS file was successfully produced:
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas 919043903 Nov 21 18:53 shared/HITS.pool.root.1
[2025-11-21 18:55:16]  *** Contents of shared directory: ***
[2025-11-21 18:55:16] total 1309976
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas 409092564 Nov 20 18:25 ATLAS.root_0
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 18:25 start_atlas.sh
[2025-11-21 18:55:16] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 18:25 input.tar.gz
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas 919043903 Nov 21 18:53 HITS.pool.root.1
[2025-11-21 18:55:16] -rw-------. 1 boincer umatlas  12656640 Nov 21 18:55 result.tar.gz
18:55:18 (2461982): run_atlas exited; CPU time 196591.318714
18:55:18 (2461982): called boinc_finish(0)

</stderr_txt>
]]>

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