Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:04:23 (19159): wrapper (7.7.26015): starting
02:04:23 (19159): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:04:23] Arguments: --nthreads 8
[2025-11-24 02:04:23] Threads: 8
[2025-11-24 02:04:23] Checking for CVMFS
[2025-11-24 02:04:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:04:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:04:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:04:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:04:25] 2.11.2.0 20854 168611 137544 153227 3 118 18999078 25165824 4462 130560 2 57296241 99.884 28013225 2528 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:04:25] CVMFS is ok
[2025-11-24 02:04:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:04:25] Checking for apptainer binary...
[2025-11-24 02:04:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:04:25] Running /usr/bin/apptainer --version
[2025-11-24 02:04:26] apptainer version 1.3.2-1.el7
[2025-11-24 02:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:04:33] cg-vwn379.simple-grid.lan
[2025-11-24 02:04:33] apptainer works
[2025-11-24 02:04:33] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:04:33] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:04:34] Starting ATLAS job with PandaID=6893849987
[2025-11-24 02:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:28:16]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:28:16] 2025-11-24 23:27:29,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:28:16] 2025-11-24 23:27:31,295 | INFO     | time since job start (80347s) is within the limit (172800.0s)
[2025-11-25 00:28:16] 2025-11-24 23:27:31,806 | INFO     | monitor loop #5368: job 0:6893849987 is in state 'finished'
[2025-11-25 00:28:16] 2025-11-24 23:27:31,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:28:16] 2025-11-24 23:27:32,496 | INFO     | PID=22975 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:28:16] 2025-11-24 23:27:32,496 | INFO     | .. there are 9 such processes running
[2025-11-25 00:28:16] 2025-11-24 23:27:33,498 | INFO     | time since job start (80349s) is within the limit (172800.0s)
[2025-11-25 00:28:16] 2025-11-24 23:27:34,310 | INFO     | monitor loop #5369: job 0:6893849987 is in state 'finished'
[2025-11-25 00:28:16] 2025-11-24 23:27:34,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:28:16] 2025-11-24 23:27:35,505 | INFO     | time since job start (80351s) is within the limit (172800.0s)
[2025-11-25 00:28:16] 2025-11-24 23:27:36,818 | INFO     | monitor loop #5370: job 0:6893849987 is in state 'finished'
[2025-11-25 00:28:16] 2025-11-24 23:27:36,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:28:16] 2025-11-24 23:27:37,512 | INFO     | time since job start (80353s) is within the limit (172800.0s)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,330 | INFO     | monitor loop #5371: job 0:6893849987 is in state 'finished'
[2025-11-25 00:28:16] 2025-11-24 23:27:39,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,519 | INFO     | time since job start (80355s) is within the limit (172800.0s)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,577 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:28:16] 2025-11-24 23:27:39,578 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 00:28:16] 2025-11-24 23:27:39,580 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6893849987/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,581 | INFO     | extracted standard info from prmon json
[2025-11-25 00:28:16] 2025-11-24 23:27:39,581 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:28:16] 2025-11-24 23:27:39,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:28:16] 2025-11-24 23:27:39,607 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:28:16] 2025-11-24 23:27:39,610 | INFO     | sum of square deviations: 693904778368.8612
[2025-11-25 00:28:16] 2025-11-24 23:27:39,664 | INFO     | sum of deviations: 2887319233902.2383
[2025-11-25 00:28:16] 2025-11-24 23:27:39,665 | INFO     | mean x: 1763986888.5963302
[2025-11-25 00:28:16] 2025-11-24 23:27:39,665 | INFO     | mean y: 2831404.04969419
[2025-11-25 00:28:16] 2025-11-24 23:27:39,665 | INFO     | intersect: -7337070885.956073
[2025-11-25 00:28:16] 2025-11-24 23:27:39,667 | INFO     | chi2: 27.45827034423997
[2025-11-25 00:28:16] 2025-11-24 23:27:39,669 | INFO     | sum of square deviations: 685977941517.8301
[2025-11-25 00:28:16] 2025-11-24 23:27:39,744 | INFO     | sum of deviations: 3312038940548.2153
[2025-11-25 00:28:16] 2025-11-24 23:27:39,744 | INFO     | mean x: 1763986736.1005373
[2025-11-25 00:28:16] 2025-11-24 23:27:39,744 | INFO     | mean y: 2839573.4029163467
[2025-11-25 00:28:16] 2025-11-24 23:27:39,744 | INFO     | intersect: -8514041811.512099
[2025-11-25 00:28:16] 2025-11-24 23:27:39,746 | INFO     | chi2: 24.270108388539885
[2025-11-25 00:28:16] 2025-11-24 23:27:39,746 | INFO     | current chi2=24.270108388539885 (change=11.610935123482308 %)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,746 | INFO     | right removable region: 1302
[2025-11-25 00:28:16] 2025-11-24 23:27:39,748 | INFO     | sum of square deviations: 685977066777.8292
[2025-11-25 00:28:16] 2025-11-24 23:27:39,795 | INFO     | sum of deviations: 2338168034761.5674
[2025-11-25 00:28:16] 2025-11-24 23:27:39,796 | INFO     | mean x: 1763987041.1005373
[2025-11-25 00:28:16] 2025-11-24 23:27:39,796 | INFO     | mean y: 2841967.4689178816
[2025-11-25 00:28:16] 2025-11-24 23:27:39,796 | INFO     | intersect: -6009746955.668854
[2025-11-25 00:28:16] 2025-11-24 23:27:39,798 | INFO     | chi2: 22.694893874561778
[2025-11-25 00:28:16] 2025-11-24 23:27:39,798 | INFO     | current chi2=22.694893874561778 (change=17.347693099239315 %)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,798 | INFO     | left removable region: 10
[2025-11-25 00:28:16] 2025-11-24 23:27:39,800 | INFO     | sum of square deviations: 668750155889.3951
[2025-11-25 00:28:16] 2025-11-24 23:27:39,846 | INFO     | sum of deviations: 2390333973485.463
[2025-11-25 00:28:16] 2025-11-24 23:27:39,846 | INFO     | mean x: 1763987010.6099072
[2025-11-25 00:28:16] 2025-11-24 23:27:39,846 | INFO     | mean y: 2861165.6517027863
[2025-11-25 00:28:16] 2025-11-24 23:27:39,846 | INFO     | intersect: -6302211129.457107
[2025-11-25 00:28:16] 2025-11-24 23:27:39,848 | INFO     | chi2: 15.359506427266336
[2025-11-25 00:28:16] 2025-11-24 23:27:39,848 | INFO     | current memory leak: 3.57 B/s (using 1292 data points, chi2=15.36)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,850 | INFO     | could have reported an average CPU frequency of 1999 MHz (44 samples)
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | ..............................
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . Timing measurements:
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . get job = 0 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . initial setup = 7 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . payload setup = 149 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . stage-in = 0 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . payload execution = 79904 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . stage-out = 5 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | . log creation = 1 s
[2025-11-25 00:28:16] 2025-11-24 23:27:39,851 | INFO     | ..............................
[2025-11-25 00:28:16] 2025-11-24 23:27:40,187 | INFO     | 
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | job summary report
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | --------------------------------------------------
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | PanDA job id: 6893849987
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | task id: 47523449
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | errors: (none)
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | pilot state: finished 
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | transexitcode: 0
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | exeerrorcode: 0
[2025-11-25 00:28:16] 2025-11-24 23:27:40,188 | INFO     | exeerrordiag: 
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | exitcode: 0
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | exitmsg: OK
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | cpuconsumptiontime: 348294 s
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | nevents: 1000
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | neventsw: 0
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | pid: 29597
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | pgrp: 29597
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | corecount: 8
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | event service: False
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | sizes: {0: 2297978, 1: 2298663, 2: 2298862, 13: 2298862, 24: 2298918, 35: 2298946, 46: 2299102, 56: 2299130, 67: 2299158, 78: 2299186, 88: 2299242, 99: 2299550, 10
[2025-11-25 00:28:16] 2025-11-24 23:27:40,189 | INFO     | --------------------------------------------------
[2025-11-25 00:28:16] 2025-11-24 23:27:40,190 | INFO     | 
[2025-11-25 00:28:16] 2025-11-24 23:27:40,190 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-25 00:28:16] 2025-11-24 23:27:40,416 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,416 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,416 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,416 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,417 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | job 6893849987 has completed (purged errors)
[2025-11-25 00:28:16] 2025-11-24 23:27:40,418 | INFO     | overall cleanup function is called
[2025-11-25 00:28:16] 2025-11-24 23:27:41,447 | INFO     | --- collectZombieJob: --- 10, [29597]
[2025-11-25 00:28:16] 2025-11-24 23:27:41,448 | INFO     | zombie collector waiting for pid 29597
[2025-11-25 00:28:16] 2025-11-24 23:27:41,448 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:28:16] 2025-11-24 23:27:41,448 | INFO     | collected zombie processes
[2025-11-25 00:28:16] 2025-11-24 23:27:41,448 | INFO     | will attempt to kill all subprocesses of pid=29597
[2025-11-25 00:28:16] 2025-11-24 23:27:41,568 | INFO     | process IDs to be killed: [29597] (in reverse order)
[2025-11-25 00:28:16] 2025-11-24 23:27:42,129 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:28:16] 2025-11-24 23:27:42,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:28:16] 2025-11-24 23:27:42,136 | INFO     | did not find any defunct processes belonging to 29597
[2025-11-25 00:28:16] 2025-11-24 23:27:42,139 | INFO     | did not find any defunct processes belonging to 29597
[2025-11-25 00:28:16] 2025-11-24 23:27:42,187 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:28:16] 2025-11-24 23:27:42,187 | INFO     | ready for new job
[2025-11-25 00:28:16] 2025-11-24 23:27:42,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:28:16] 2025-11-24 23:27:42,192 | INFO     | ***************************************
[2025-11-25 00:28:16] 2025-11-24 23:27:42,193 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:28:16] 2025-11-24 23:27:42,193 | INFO     | ***************************************
[2025-11-25 00:28:16] 2025-11-24 23:27:42,193 | INFO     | 
[2025-11-25 00:28:16] 2025-11-24 23:27:42,194 | INFO     | pilot is running in a VM
[2025-11-25 00:28:16] 2025-11-24 23:27:42,194 | INFO     | architecture information:
[2025-11-25 00:28:16] 2025-11-24 23:27:42,205 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:28:16] 2025-11-24 23:27:42,422 | INFO     | cat /etc/os-release:
[2025-11-25 00:28:16] NAME="CentOS Linux"
[2025-11-25 00:28:16] VERSION="7 (Core)"
[2025-11-25 00:28:16] ID="centos"
[2025-11-25 00:28:16] ID_LIKE="rhel fedora"
[2025-11-25 00:28:16] VERSION_ID="7"
[2025-11-25 00:28:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:28:16] ANSI_COLOR="0;31"
[2025-11-25 00:28:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:28:16] HOME_URL="https://www.centos.org/"
[2025-11-25 00:28:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:28:16] 
[2025-11-25 00:28:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:28:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:28:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:28:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:28:16] 
[2025-11-25 00:28:16] 2025-11-24 23:27:42,422 | INFO     | ***************************************
[2025-11-25 00:28:16] 2025-11-24 23:27:42,925 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-25 00:28:16] 2025-11-24 23:27:43,119 | INFO     | sufficient remaining disk space (494769537024 B)
[2025-11-25 00:28:16] 2025-11-24 23:27:43,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:28:16] 2025-11-24 23:27:43,120 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:28:16] 2025-11-24 23:27:43,120 | INFO     | update_server=False
[2025-11-25 00:28:16] 2025-11-24 23:27:43,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:28:16] 2025-11-24 23:27:43,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:28:16] 2025-11-24 23:27:43,121 | INFO     | aborting loop
[2025-11-25 00:28:16] 2025-11-24 23:27:43,138 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:28:16] 2025-11-24 23:27:43,221 | INFO     | all data control threads have been joined
[2025-11-25 00:28:16] 2025-11-24 23:27:43,585 | INFO     | all job control threads have been joined
[2025-11-25 00:28:16] 2025-11-24 23:27:44,126 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,127 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,227 | INFO     | [data] control thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,228 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,238 | INFO     | all payload control threads have been joined
[2025-11-25 00:28:16] 2025-11-24 23:27:44,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:28:16] 2025-11-24 23:27:44,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,505 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,591 | INFO     | [job] control thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,698 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,756 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,977 | INFO     | [job] validate thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:44,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:28:16] 2025-11-24 23:27:45,063 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:45,217 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:45,245 | INFO     | [payload] control thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:45,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:28:16] 2025-11-24 23:27:46,004 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:46,459 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:49,740 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:28:16] 2025-11-24 23:27:51,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140544217192256)>', '<ExcThread(monitor, started 140543342409472)>']
[2025-11-25 00:28:16] 2025-11-24 23:27:56,833 | INFO     | all workflow threads have been joined
[2025-11-25 00:28:16] 2025-11-24 23:27:56,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:28:16] 2025-11-24 23:27:56,834 | INFO     | traces error code: 0
[2025-11-25 00:28:16] 2025-11-24 23:27:56,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:28:16] 2025-11-24 23:28:12,671 | INFO     | PID=22975 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 00:28:16] 2025-11-24 23:28:12,671 | INFO     | .. there are 9 such processes running
[2025-11-25 00:28:16] 2025-11-24 23:28:12,672 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:28:16] 2025-11-24 23:28:12,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:28:16] 2025-11-24 23:28:12,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:28:16] 2025-11-24 23:28:12,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:28:16] 2025-11-24 23:28:12,672 | INFO     | [monitor] control thread has ended
[2025-11-25 00:28:16] 2025-11-24 23:28:12,861 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:28:16] 2025-11-24 23:28:12,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:28:16] 2025-11-24 23:28:13,067 [wrapper] pilotpid: 22975
[2025-11-25 00:28:16] 2025-11-24 23:28:13,226 [wrapper] Pilot exit status: 0
[2025-11-25 00:28:16] 2025-11-24 23:28:13,578 [wrapper] pandaids: 6893849987
[2025-11-25 00:28:16] 2025-11-24 23:28:14,942 [wrapper] cleanup supervisor_pilot 13141 22976
[2025-11-25 00:28:16] 2025-11-24 23:28:14,972 [wrapper] Test setup, not cleaning
[2025-11-25 00:28:16] 2025-11-24 23:28:15,004 [wrapper] apfmon messages muted
[2025-11-25 00:28:16] 2025-11-24 23:28:15,036 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:28:16] 2025-11-24 23:28:15,098 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:28:16]  *** Error codes and diagnostics ***
[2025-11-25 00:28:16]     "exeErrorCode": 0,
[2025-11-25 00:28:16]     "exeErrorDiag": "",
[2025-11-25 00:28:16]     "pilotErrorCode": 0,
[2025-11-25 00:28:16]     "pilotErrorDiag": "",
[2025-11-25 00:28:16]  *** Listing of results directory ***
[2025-11-25 00:28:16] total 1336764
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:00 pilot3.tar.gz
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:05 queuedata.json
[2025-11-25 00:28:16] -rwx------. 1 boinc boinc     36292 Nov 20 12:07 runpilot2-wrapper.sh
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:28:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:04 run_atlas
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:04 job.xml
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc      6392 Nov 24 02:04 init_data.xml
[2025-11-25 00:28:16] -rw-r--r--. 2 boinc boinc 410945474 Nov 24 02:04 EVNT.47493127._000314.pool.root.1
[2025-11-25 00:28:16] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:04 start_atlas.sh
[2025-11-25 00:28:16] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:04 shared
[2025-11-25 00:28:16] -rw-r--r--. 2 boinc boinc    590104 Nov 24 02:04 input.tar.gz
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:04 boinc_lockfile
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc      2785 Nov 24 02:04 pandaJob.out
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc    989786 Nov 24 02:08 agis_schedconf.cvmfs.json
[2025-11-25 00:28:16] drwx------. 5 boinc boinc      4096 Nov 24 02:08 pilot3
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:01 boinc_task_state.xml
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc 927851593 Nov 25 00:24 HITS.47523449._003133.pool.root.1
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc      1033 Nov 25 00:25 memory_monitor_summary.json
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc   1516227 Nov 25 00:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc   2423023 Nov 25 00:26 log.47523449._003133.job.log.tgz.1
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc        95 Nov 25 00:27 pilot_heartbeat.json
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc      7945 Nov 25 00:27 heartbeat.json
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc      8192 Nov 25 00:28 boinc_mmap_file
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc        29 Nov 25 00:28 wrapper_checkpoint.txt
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc       820 Nov 25 00:28 pilotlog.txt
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc  10653719 Nov 25 00:28 log.47523449._003133.job.log.1
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc       353 Nov 25 00:28 output.list
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc       620 Nov 25 00:28 runtime_log
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc  13096960 Nov 25 00:28 result.tar.gz
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc      8817 Nov 25 00:28 runtime_log.err
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc       662 Nov 25 00:28 0GqLDmYgHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpVGKDmRajI7m.diag
[2025-11-25 00:28:16] -rw-r--r--. 1 boinc boinc     21525 Nov 25 00:28 stderr.txt
[2025-11-25 00:28:16] HITS file was successfully produced:
[2025-11-25 00:28:16] -rw-------. 1 boinc boinc 927851593 Nov 25 00:24 shared/HITS.pool.root.1
[2025-11-25 00:28:16]  *** Contents of shared directory: ***
[2025-11-25 00:28:17] total 1320812
[2025-11-25 00:28:17] -rw-r--r--. 2 boinc boinc 410945474 Nov 24 02:04 ATLAS.root_0
[2025-11-25 00:28:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:04 start_atlas.sh
[2025-11-25 00:28:17] -rw-r--r--. 2 boinc boinc    590104 Nov 24 02:04 input.tar.gz
[2025-11-25 00:28:17] -rw-------. 1 boinc boinc 927851593 Nov 25 00:24 HITS.pool.root.1
[2025-11-25 00:28:17] -rw-------. 1 boinc boinc  13096960 Nov 25 00:28 result.tar.gz
00:28:18 (19159): run_atlas exited; CPU time 348695.666849
00:28:18 (19159): called boinc_finish(0)

</stderr_txt>
]]>

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