Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:50:22 (2298276): wrapper (7.7.26015): starting
00:50:22 (2298276): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:50:22] Arguments: --nthreads 4
[2025-11-21 00:50:22] Threads: 4
[2025-11-21 00:50:22] Checking for CVMFS
[2025-11-21 00:50:22] No cvmfs_config command found, will try listing directly
[2025-11-21 00:50:22] CVMFS is ok
[2025-11-21 00:50:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:50:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:50:22] Further information can be found at the LHC@home message board.
[2025-11-21 00:50:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:50:22] Checking for apptainer binary...
[2025-11-21 00:50:22] which: no apptainer in ((null))
[2025-11-21 00:50:22] apptainer is not installed, using version from CVMFS
[2025-11-21 00:50:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:50:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-21 00:50:23] apptainer works
[2025-11-21 00:50:23] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:50:23] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:50:23] Starting ATLAS job with PandaID=6893848679
[2025-11-21 00:50:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:42:07]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:42:07] 2025-11-21 18:38:50,575 | INFO     | monitor loop #4821: job 0:6893848679 is in state 'finished'
[2025-11-21 19:42:07] 2025-11-21 18:38:50,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:42:07] 2025-11-21 18:38:50,766 | INFO     | time since job start (67696s) is within the limit (172800.0s)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,656 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 19:42:07] 2025-11-21 18:38:51,667 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2546.0541562500007
[2025-11-21 19:42:07] 2025-11-21 18:38:51,681 | INFO     | using path: /scratch/boinc/var/slot60/slots/1/PanDA_Pilot-6893848679/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,682 | INFO     | extracted standard info from prmon json
[2025-11-21 19:42:07] 2025-11-21 18:38:51,682 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:42:07] 2025-11-21 18:38:51,682 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:42:07] 2025-11-21 18:38:51,702 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:42:07] 2025-11-21 18:38:51,704 | INFO     | sum of square deviations: 424079188773.29785
[2025-11-21 19:42:07] 2025-11-21 18:38:51,729 | INFO     | sum of deviations: 1177623333240.7004
[2025-11-21 19:42:07] 2025-11-21 18:38:51,729 | INFO     | mean x: 1763716487.5135136
[2025-11-21 19:42:07] 2025-11-21 18:38:51,729 | INFO     | mean y: 2280892.953153153
[2025-11-21 19:42:07] 2025-11-21 18:38:51,730 | INFO     | intersect: -4895374412.710886
[2025-11-21 19:42:07] 2025-11-21 18:38:51,731 | INFO     | chi2: 4.94791102434554
[2025-11-21 19:42:07] 2025-11-21 18:38:51,733 | INFO     | sum of square deviations: 418374165450.7972
[2025-11-21 19:42:07] 2025-11-21 18:38:51,758 | INFO     | sum of deviations: 1452281994047.8142
[2025-11-21 19:42:07] 2025-11-21 18:38:51,759 | INFO     | mean x: 1763716335.0135746
[2025-11-21 19:42:07] 2025-11-21 18:38:51,759 | INFO     | mean y: 2288233.9457013574
[2025-11-21 19:42:07] 2025-11-21 18:38:51,759 | INFO     | intersect: -6120014927.838439
[2025-11-21 19:42:07] 2025-11-21 18:38:51,760 | INFO     | chi2: 2.2514922287644246
[2025-11-21 19:42:07] 2025-11-21 18:38:51,761 | INFO     | current chi2=2.2514922287644246 (change=54.496105170722444 %)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,762 | INFO     | sum of square deviations: 412720538440.7962
[2025-11-21 19:42:07] 2025-11-21 18:38:51,787 | INFO     | sum of deviations: 1516204850645.1772
[2025-11-21 19:42:07] 2025-11-21 18:38:51,787 | INFO     | mean x: 1763716182.5136364
[2025-11-21 19:42:07] 2025-11-21 18:38:51,787 | INFO     | mean y: 2289956.4881818183
[2025-11-21 19:42:07] 2025-11-21 18:38:51,788 | INFO     | intersect: -6477046015.47768
[2025-11-21 19:42:07] 2025-11-21 18:38:51,789 | INFO     | chi2: 2.0168694162436003
[2025-11-21 19:42:07] 2025-11-21 18:38:51,789 | INFO     | current chi2=2.0168694162436003 (change=10.420769369014467 %)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,789 | INFO     | right removable region: 1099
[2025-11-21 19:42:07] 2025-11-21 18:38:51,791 | INFO     | sum of square deviations: 418374156300.7971
[2025-11-21 19:42:07] 2025-11-21 18:38:51,816 | INFO     | sum of deviations: 964707756268.0505
[2025-11-21 19:42:07] 2025-11-21 18:38:51,816 | INFO     | mean x: 1763716640.0135746
[2025-11-21 19:42:07] 2025-11-21 18:38:51,816 | INFO     | mean y: 2286576.6633484163
[2025-11-21 19:42:07] 2025-11-21 18:38:51,816 | INFO     | intersect: -4064578206.583013
[2025-11-21 19:42:07] 2025-11-21 18:38:51,818 | INFO     | chi2: 3.0612603029108327
[2025-11-21 19:42:07] 2025-11-21 18:38:51,818 | INFO     | current chi2=3.0612603029108327 (change=38.13024753581244 %)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,819 | INFO     | sum of square deviations: 412720520140.79626
[2025-11-21 19:42:07] 2025-11-21 18:38:51,844 | INFO     | sum of deviations: 926094326461.1368
[2025-11-21 19:42:07] 2025-11-21 18:38:51,845 | INFO     | mean x: 1763716792.5136364
[2025-11-21 19:42:07] 2025-11-21 18:38:51,845 | INFO     | mean y: 2287617.790909091
[2025-11-21 19:42:07] 2025-11-21 18:38:51,845 | INFO     | intersect: -3955276969.67836
[2025-11-21 19:42:07] 2025-11-21 18:38:51,846 | INFO     | chi2: 3.03957173594762
[2025-11-21 19:42:07] 2025-11-21 18:38:51,847 | INFO     | current chi2=3.03957173594762 (change=0.7084848989349165 %)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,847 | INFO     | left removable region: 20
[2025-11-21 19:42:07] 2025-11-21 18:38:51,848 | INFO     | sum of square deviations: 389531267660.7919
[2025-11-21 19:42:07] 2025-11-21 18:38:51,873 | INFO     | sum of deviations: 1203235454524.8938
[2025-11-21 19:42:07] 2025-11-21 18:38:51,873 | INFO     | mean x: 1763716762.0139017
[2025-11-21 19:42:07] 2025-11-21 18:38:51,873 | INFO     | mean y: 2298311.6070435587
[2025-11-21 19:42:07] 2025-11-21 18:38:51,873 | INFO     | intersect: -5445702185.346585
[2025-11-21 19:42:07] 2025-11-21 18:38:51,875 | INFO     | chi2: 0.08709395482561322
[2025-11-21 19:42:07] 2025-11-21 18:38:51,875 | INFO     | current memory leak: 3.09 B/s (using 1079 data points, chi2=0.09)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,876 | INFO     | could have reported an average CPU frequency of 2525 MHz (41 samples)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,876 | INFO     | ..............................
[2025-11-21 19:42:07] 2025-11-21 18:38:51,876 | INFO     | . Timing measurements:
[2025-11-21 19:42:07] 2025-11-21 18:38:51,876 | INFO     | . get job = 0 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . initial setup = 1 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . payload setup = 6 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . stage-in = 0 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . payload execution = 67660 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . stage-out = 3 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | . log creation = 0 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,877 | INFO     | ..............................
[2025-11-21 19:42:07] 2025-11-21 18:38:51,984 | INFO     | 
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | job summary report
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | --------------------------------------------------
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | PanDA job id: 6893848679
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | task id: 47523449
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | errors: (none)
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | pilot state: finished 
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | transexitcode: 0
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | exeerrorcode: 0
[2025-11-21 19:42:07] 2025-11-21 18:38:51,985 | INFO     | exeerrordiag: 
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | exitcode: 0
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | exitmsg: OK
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | cpuconsumptiontime: 267047 s
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | nevents: 1000
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | neventsw: 0
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | pid: 2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | pgrp: 2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | corecount: 4
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | event service: False
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | sizes: {0: 2298812, 1: 2298812, 5: 2299102, 11: 2299158, 67671: 2354804, 67676: 2364004, 67681: 2364290}
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | --------------------------------------------------
[2025-11-21 19:42:07] 2025-11-21 18:38:51,986 | INFO     | 
[2025-11-21 19:42:07] 2025-11-21 18:38:51,987 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/1
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:42:07] 2025-11-21 18:38:52,010 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:42:07] 2025-11-21 18:38:52,011 | INFO     | job 6893848679 has completed (purged errors)
[2025-11-21 19:42:07] 2025-11-21 18:38:52,011 | INFO     | overall cleanup function is called
[2025-11-21 19:42:07] 2025-11-21 18:38:53,025 | INFO     | --- collectZombieJob: --- 10, [2308980]
[2025-11-21 19:42:07] 2025-11-21 18:38:53,025 | INFO     | zombie collector waiting for pid 2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:53,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:42:07] 2025-11-21 18:38:53,025 | INFO     | collected zombie processes
[2025-11-21 19:42:07] 2025-11-21 18:38:53,025 | INFO     | will attempt to kill all subprocesses of pid=2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:53,411 | INFO     | process IDs to be killed: [2308980] (in reverse order)
[2025-11-21 19:42:07] 2025-11-21 18:38:53,531 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:42:07] 2025-11-21 18:38:53,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:42:07] 2025-11-21 18:38:53,546 | INFO     | did not find any defunct processes belonging to 2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:53,560 | INFO     | did not find any defunct processes belonging to 2308980
[2025-11-21 19:42:07] 2025-11-21 18:38:53,561 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:42:07] 2025-11-21 18:38:53,562 | INFO     | ready for new job
[2025-11-21 19:42:07] 2025-11-21 18:38:53,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:42:07] 2025-11-21 18:38:53,568 | INFO     | ***************************************
[2025-11-21 19:42:07] 2025-11-21 18:38:53,568 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:42:07] 2025-11-21 18:38:53,568 | INFO     | ***************************************
[2025-11-21 19:42:07] 2025-11-21 18:38:53,568 | INFO     | 
[2025-11-21 19:42:07] 2025-11-21 18:38:53,572 | INFO     | architecture information:
[2025-11-21 19:42:07] 2025-11-21 18:38:53,573 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:42:07] 2025-11-21 18:38:53,590 | INFO     | cat /etc/os-release:
[2025-11-21 19:42:07] NAME="CentOS Linux"
[2025-11-21 19:42:07] VERSION="7 (Core)"
[2025-11-21 19:42:07] ID="centos"
[2025-11-21 19:42:07] ID_LIKE="rhel fedora"
[2025-11-21 19:42:07] VERSION_ID="7"
[2025-11-21 19:42:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:42:07] ANSI_COLOR="0;31"
[2025-11-21 19:42:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:42:07] HOME_URL="https://www.centos.org/"
[2025-11-21 19:42:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:42:07] 
[2025-11-21 19:42:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:42:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:42:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:42:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:42:07] 
[2025-11-21 19:42:07] 2025-11-21 18:38:53,590 | INFO     | ***************************************
[2025-11-21 19:42:07] 2025-11-21 18:38:54,093 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/1
[2025-11-21 19:42:07] 2025-11-21 18:38:54,111 | INFO     | sufficient remaining disk space (668891873280 B)
[2025-11-21 19:42:07] 2025-11-21 18:38:54,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:42:07] 2025-11-21 18:38:54,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:42:07] 2025-11-21 18:38:54,112 | INFO     | update_server=False
[2025-11-21 19:42:07] 2025-11-21 18:38:54,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:42:07] 2025-11-21 18:38:54,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:42:07] 2025-11-21 18:38:54,112 | INFO     | aborting loop
[2025-11-21 19:42:07] 2025-11-21 18:38:54,463 | INFO     | all data control threads have been joined
[2025-11-21 19:42:07] 2025-11-21 18:38:54,483 | INFO     | all payload control threads have been joined
[2025-11-21 19:42:07] 2025-11-21 18:38:54,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:42:07] 2025-11-21 18:38:55,112 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,116 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,469 | INFO     | [data] control thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,488 | INFO     | [payload] control thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,564 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,671 | INFO     | all job control threads have been joined
[2025-11-21 19:42:07] 2025-11-21 18:38:55,781 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:55,949 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,231 | INFO     | [job] validate thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,376 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,422 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,537 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,676 | INFO     | [job] control thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,783 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:38:56,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:42:07] 2025-11-21 18:38:57,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:42:07] 2025-11-21 18:38:57,997 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:39:01,373 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:42:07] 2025-11-21 18:39:24,192 | INFO     | PID=2302083 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 19:42:07] 2025-11-21 18:39:24,192 | INFO     | .. there are 3 such processes running
[2025-11-21 19:42:07] 2025-11-21 18:39:24,193 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:42:07] 2025-11-21 18:39:24,193 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:42:07] 2025-11-21 18:39:24,193 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:42:07] 2025-11-21 18:39:26,337 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:42:07] 2025-11-21 18:39:26,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22727236708160)>', '<ExcThread(monitor, started 22726993467136)>']
[2025-11-21 19:42:07] 2025-11-21 18:39:27,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:42:07] 2025-11-21 18:39:27,208 | INFO     | [monitor] control thread has ended
[2025-11-21 19:42:07] 2025-11-21 18:39:31,880 | INFO     | all workflow threads have been joined
[2025-11-21 19:42:07] 2025-11-21 18:39:31,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:42:07] 2025-11-21 18:39:31,881 | INFO     | traces error code: 0
[2025-11-21 19:42:07] 2025-11-21 18:39:31,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:42:07] 2025-11-21 18:39:32,079 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:42:07] 2025-11-21 18:39:32,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:42:07] 2025-11-21 18:39:32,085 [wrapper] pilotpid: 2302083
[2025-11-21 19:42:07] 2025-11-21 18:39:32,088 [wrapper] Pilot exit status: 0
[2025-11-21 19:42:07] 2025-11-21 18:39:32,098 [wrapper] pandaids: 6893848679
[2025-11-21 19:42:07] 2025-11-21 18:39:32,180 [wrapper] cleanup supervisor_pilot 3380566 2302084
[2025-11-21 19:42:07] 2025-11-21 18:39:32,183 [wrapper] Test setup, not cleaning
[2025-11-21 19:42:07] 2025-11-21 18:39:32,186 [wrapper] apfmon messages muted
[2025-11-21 19:42:07] 2025-11-21 18:39:32,189 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:42:07] 2025-11-21 18:39:32,192 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:42:07]  *** Error codes and diagnostics ***
[2025-11-21 19:42:07]     "exeErrorCode": 0,
[2025-11-21 19:42:07]     "exeErrorDiag": "",
[2025-11-21 19:42:07]     "pilotErrorCode": 0,
[2025-11-21 19:42:07]     "pilotErrorDiag": "",
[2025-11-21 19:42:07]  *** Listing of results directory ***
[2025-11-21 19:42:07] total 1329352
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:49 queuedata.json
[2025-11-21 19:42:07] -rwx------ 1 boinc boinc     36292 Nov 20 11:51 runpilot2-wrapper.sh
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:42:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:36 run_atlas
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:36 job.xml
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc 411268095 Nov 21 00:50 EVNT.47493127._000290.pool.root.1
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc      6634 Nov 21 00:50 init_data.xml
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:50 start_atlas.sh
[2025-11-21 19:42:07] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:50 shared
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc    590102 Nov 21 00:50 input.tar.gz
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:50 boinc_lockfile
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc      2783 Nov 21 00:50 pandaJob.out
[2025-11-21 19:42:07] -rw------- 1 boinc boinc    989817 Nov 21 00:50 agis_schedconf.cvmfs.json
[2025-11-21 19:42:07] drwx------ 5 boinc boinc      4096 Nov 21 00:50 pilot3
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc       530 Nov 21 19:29 boinc_task_state.xml
[2025-11-21 19:42:07] -rw------- 1 boinc boinc 923533876 Nov 21 19:37 HITS.47523449._002891.pool.root.1
[2025-11-21 19:42:07] -rw------- 1 boinc boinc      1045 Nov 21 19:38 memory_monitor_summary.json
[2025-11-21 19:42:07] -rw------- 1 boinc boinc   1526164 Nov 21 19:38 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:42:07] -rw------- 1 boinc boinc   1821394 Nov 21 19:38 log.47523449._002891.job.log.tgz.1
[2025-11-21 19:42:07] -rw------- 1 boinc boinc      8628 Nov 21 19:38 heartbeat.json
[2025-11-21 19:42:07] -rw------- 1 boinc boinc        95 Nov 21 19:39 pilot_heartbeat.json
[2025-11-21 19:42:07] -rw------- 1 boinc boinc      4834 Nov 21 19:39 pilotlog.txt
[2025-11-21 19:42:07] -rw------- 1 boinc boinc   9444698 Nov 21 19:39 log.47523449._002891.job.log.1
[2025-11-21 19:42:07] -rw------- 1 boinc boinc       353 Nov 21 19:39 output.list
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:39 runtime_log
[2025-11-21 19:42:07] -rw------- 1 boinc boinc  11284480 Nov 21 19:39 result.tar.gz
[2025-11-21 19:42:07] -rw------- 1 boinc boinc       671 Nov 21 19:39 yiIODmhRHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJYHKDm7yk0km.diag
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc      9206 Nov 21 19:39 runtime_log.err
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc        28 Nov 21 19:42 wrapper_checkpoint.txt
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:42 boinc_mmap_file
[2025-11-21 19:42:07] -rw-r--r-- 1 boinc boinc     21109 Nov 21 19:42 stderr.txt
[2025-11-21 19:42:07] HITS file was successfully produced:
[2025-11-21 19:42:07] -rw------- 1 boinc boinc 923533876 Nov 21 19:37 shared/HITS.pool.root.1
[2025-11-21 19:42:07]  *** Contents of shared directory: ***
[2025-11-21 19:42:07] total 1315148
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc 411268095 Nov 21 00:50 ATLAS.root_0
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:50 start_atlas.sh
[2025-11-21 19:42:07] -rw-r--r-- 2 boinc boinc    590102 Nov 21 00:50 input.tar.gz
[2025-11-21 19:42:07] -rw------- 1 boinc boinc 923533876 Nov 21 19:37 HITS.pool.root.1
[2025-11-21 19:42:07] -rw------- 1 boinc boinc  11284480 Nov 21 19:39 result.tar.gz
19:42:09 (2298276): run_atlas exited; CPU time 269708.227706
19:42:09 (2298276): called boinc_finish(0)

</stderr_txt>
]]>

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