Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:17:42 (120627): wrapper (7.7.26015): starting
00:17:42 (120627): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:17:42] Arguments: --nthreads 4
[2025-11-21 00:17:42] Threads: 4
[2025-11-21 00:17:42] Checking for CVMFS
[2025-11-21 00:17:42] No cvmfs_config command found, will try listing directly
[2025-11-21 00:17:42] CVMFS is ok
[2025-11-21 00:17:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:17:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:17:42] Further information can be found at the LHC@home message board.
[2025-11-21 00:17:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:17:42] Checking for apptainer binary...
[2025-11-21 00:17:42] which: no apptainer in ((null))
[2025-11-21 00:17:42] apptainer is not installed, using version from CVMFS
[2025-11-21 00:17:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:17:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-11-21 00:17:42] apptainer works
[2025-11-21 00:17:42] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:17:42] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:17:42] Starting ATLAS job with PandaID=6893858439
[2025-11-21 00:17:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 17:21:46]  *** The last 200 lines of the pilot log: ***
[2025-11-21 17:21:46] 2025-11-21 16:16:35,840 | INFO     | time since job start (61118s) is within the limit (172800.0s)
[2025-11-21 17:21:46] 2025-11-21 16:16:36,542 | INFO     | monitor loop #3927: job 0:6893858439 is in state 'finished'
[2025-11-21 17:21:46] 2025-11-21 16:16:36,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,088 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 17:21:46] 2025-11-21 16:16:37,109 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2730.5855703125007
[2025-11-21 17:21:46] 2025-11-21 16:16:37,132 | INFO     | using path: /scratch/boinc/var/slot96/slots/1/PanDA_Pilot-6893858439/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,133 | INFO     | extracted standard info from prmon json
[2025-11-21 17:21:46] 2025-11-21 16:16:37,133 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 17:21:46] 2025-11-21 16:16:37,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 17:21:46] 2025-11-21 16:16:37,149 | INFO     | fitting pss+swap vs Time
[2025-11-21 17:21:46] 2025-11-21 16:16:37,150 | INFO     | sum of square deviations: 311948341460.53534
[2025-11-21 17:21:46] 2025-11-21 16:16:37,176 | INFO     | sum of deviations: 797802465020.3357
[2025-11-21 17:21:46] 2025-11-21 16:16:37,176 | INFO     | mean x: 1763711242.740519
[2025-11-21 17:21:46] 2025-11-21 16:16:37,176 | INFO     | mean y: 2285870.508982036
[2025-11-21 17:21:46] 2025-11-21 16:16:37,176 | INFO     | intersect: -4508374998.7057295
[2025-11-21 17:21:46] 2025-11-21 16:16:37,177 | INFO     | chi2: 4.642753205279809
[2025-11-21 17:21:46] 2025-11-21 16:16:37,178 | INFO     | sum of square deviations: 307301806912.74414
[2025-11-21 17:21:46] 2025-11-21 16:16:37,203 | INFO     | sum of deviations: 1030412937254.4689
[2025-11-21 17:21:46] 2025-11-21 16:16:37,203 | INFO     | mean x: 1763711090.2417252
[2025-11-21 17:21:46] 2025-11-21 16:16:37,204 | INFO     | mean y: 2293499.541624875
[2025-11-21 17:21:46] 2025-11-21 16:16:37,204 | INFO     | intersect: -5911601844.003425
[2025-11-21 17:21:46] 2025-11-21 16:16:37,205 | INFO     | chi2: 2.0331038382854665
[2025-11-21 17:21:46] 2025-11-21 16:16:37,205 | INFO     | current chi2=2.0331038382854665 (change=56.209090847788545 %)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,206 | INFO     | sum of square deviations: 302701645327.4508
[2025-11-21 17:21:46] 2025-11-21 16:16:37,229 | INFO     | sum of deviations: 1089529386892.48
[2025-11-21 17:21:46] 2025-11-21 16:16:37,229 | INFO     | mean x: 1763710937.7429435
[2025-11-21 17:21:46] 2025-11-21 16:16:37,230 | INFO     | mean y: 2295458.068548387
[2025-11-21 17:21:46] 2025-11-21 16:16:37,230 | INFO     | intersect: -6345918786.277241
[2025-11-21 17:21:46] 2025-11-21 16:16:37,231 | INFO     | chi2: 1.8167802365924752
[2025-11-21 17:21:46] 2025-11-21 16:16:37,231 | INFO     | current chi2=1.8167802365924752 (change=10.640066563221815 %)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,231 | INFO     | right removable region: 991
[2025-11-21 17:21:46] 2025-11-21 16:16:37,232 | INFO     | sum of square deviations: 307301659902.7437
[2025-11-21 17:21:46] 2025-11-21 16:16:37,255 | INFO     | sum of deviations: 624521723074.5746
[2025-11-21 17:21:46] 2025-11-21 16:16:37,255 | INFO     | mean x: 1763711395.2417252
[2025-11-21 17:21:46] 2025-11-21 16:16:37,256 | INFO     | mean y: 2291546.736208626
[2025-11-21 17:21:46] 2025-11-21 16:16:37,256 | INFO     | intersect: -3582056419.0744047
[2025-11-21 17:21:46] 2025-11-21 16:16:37,257 | INFO     | chi2: 2.9027846581233225
[2025-11-21 17:21:46] 2025-11-21 16:16:37,257 | INFO     | current chi2=2.9027846581233225 (change=37.47708461388316 %)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,258 | INFO     | sum of square deviations: 302701351307.45056
[2025-11-21 17:21:46] 2025-11-21 16:16:37,280 | INFO     | sum of deviations: 600428086772.2567
[2025-11-21 17:21:46] 2025-11-21 16:16:37,281 | INFO     | mean x: 1763711547.7429435
[2025-11-21 17:21:46] 2025-11-21 16:16:37,281 | INFO     | mean y: 2292345.0010080645
[2025-11-21 17:21:46] 2025-11-21 16:16:37,281 | INFO     | intersect: -3496145787.6845465
[2025-11-21 17:21:46] 2025-11-21 16:16:37,282 | INFO     | chi2: 2.8946651769465874
[2025-11-21 17:21:46] 2025-11-21 16:16:37,282 | INFO     | current chi2=2.8946651769465874 (change=0.27971352108442077 %)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,282 | INFO     | left removable region: 20
[2025-11-21 17:21:46] 2025-11-21 16:16:37,283 | INFO     | sum of square deviations: 283881522909.1843
[2025-11-21 17:21:46] 2025-11-21 16:16:37,305 | INFO     | sum of deviations: 856160833601.3793
[2025-11-21 17:21:46] 2025-11-21 16:16:37,305 | INFO     | mean x: 1763711517.2481978
[2025-11-21 17:21:46] 2025-11-21 16:16:37,306 | INFO     | mean y: 2303058.359423275
[2025-11-21 17:21:46] 2025-11-21 16:16:37,306 | INFO     | intersect: -5316890340.932846
[2025-11-21 17:21:46] 2025-11-21 16:16:37,307 | INFO     | chi2: 0.05442182362302628
[2025-11-21 17:21:46] 2025-11-21 16:16:37,307 | INFO     | current memory leak: 3.02 B/s (using 971 data points, chi2=0.05)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | could have reported an average CPU frequency of 2677 MHz (37 samples)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | ..............................
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | . Timing measurements:
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | . get job = 0 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | . initial setup = 1 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,308 | INFO     | . payload setup = 9 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,309 | INFO     | . stage-in = 0 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,309 | INFO     | . payload execution = 61078 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,309 | INFO     | . stage-out = 2 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,309 | INFO     | . log creation = 0 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,309 | INFO     | ..............................
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | 
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | job summary report
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | --------------------------------------------------
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | PanDA job id: 6893858439
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | task id: 47523449
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | errors: (none)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | pilot state: finished 
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | transexitcode: 0
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | exeerrorcode: 0
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | exeerrordiag: 
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | exitcode: 0
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | exitmsg: OK
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | cpuconsumptiontime: 233423 s
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | nevents: 1000
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | neventsw: 0
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | pid: 132327
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | pgrp: 132327
[2025-11-21 17:21:46] 2025-11-21 16:16:37,407 | INFO     | corecount: 4
[2025-11-21 17:21:46] 2025-11-21 16:16:37,408 | INFO     | event service: False
[2025-11-21 17:21:46] 2025-11-21 16:16:37,408 | INFO     | sizes: {0: 2298647, 1: 2298846, 7: 2299108, 11: 2299136, 61091: 2353946, 61094: 2362962, 61095: 2363146, 61102: 2363392}
[2025-11-21 17:21:46] 2025-11-21 16:16:37,408 | INFO     | --------------------------------------------------
[2025-11-21 17:21:46] 2025-11-21 16:16:37,408 | INFO     | 
[2025-11-21 17:21:46] 2025-11-21 16:16:37,408 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/1
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,438 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,438 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 17:21:46] 2025-11-21 16:16:37,438 | INFO     | job 6893858439 has completed (purged errors)
[2025-11-21 17:21:46] 2025-11-21 16:16:37,438 | INFO     | overall cleanup function is called
[2025-11-21 17:21:46] 2025-11-21 16:16:38,454 | INFO     | --- collectZombieJob: --- 10, [132327]
[2025-11-21 17:21:46] 2025-11-21 16:16:38,454 | INFO     | zombie collector waiting for pid 132327
[2025-11-21 17:21:46] 2025-11-21 16:16:38,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 17:21:46] 2025-11-21 16:16:38,455 | INFO     | collected zombie processes
[2025-11-21 17:21:46] 2025-11-21 16:16:38,455 | INFO     | will attempt to kill all subprocesses of pid=132327
[2025-11-21 17:21:46] 2025-11-21 16:16:39,315 | INFO     | process IDs to be killed: [132327] (in reverse order)
[2025-11-21 17:21:46] 2025-11-21 16:16:39,579 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 17:21:46] 2025-11-21 16:16:39,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 17:21:46] 2025-11-21 16:16:39,614 | INFO     | did not find any defunct processes belonging to 132327
[2025-11-21 17:21:46] 2025-11-21 16:16:39,647 | INFO     | did not find any defunct processes belonging to 132327
[2025-11-21 17:21:46] 2025-11-21 16:16:39,648 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 17:21:46] 2025-11-21 16:16:39,649 | INFO     | ready for new job
[2025-11-21 17:21:46] 2025-11-21 16:16:39,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 17:21:46] 2025-11-21 16:16:39,655 | INFO     | ***************************************
[2025-11-21 17:21:46] 2025-11-21 16:16:39,656 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 17:21:46] 2025-11-21 16:16:39,656 | INFO     | ***************************************
[2025-11-21 17:21:46] 2025-11-21 16:16:39,656 | INFO     | 
[2025-11-21 17:21:46] 2025-11-21 16:16:39,664 | INFO     | architecture information:
[2025-11-21 17:21:46] 2025-11-21 16:16:39,665 | INFO     | executing command: cat /etc/os-release
[2025-11-21 17:21:46] 2025-11-21 16:16:39,687 | INFO     | cat /etc/os-release:
[2025-11-21 17:21:46] NAME="CentOS Linux"
[2025-11-21 17:21:46] VERSION="7 (Core)"
[2025-11-21 17:21:46] ID="centos"
[2025-11-21 17:21:46] ID_LIKE="rhel fedora"
[2025-11-21 17:21:46] VERSION_ID="7"
[2025-11-21 17:21:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 17:21:46] ANSI_COLOR="0;31"
[2025-11-21 17:21:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 17:21:46] HOME_URL="https://www.centos.org/"
[2025-11-21 17:21:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 17:21:46] 
[2025-11-21 17:21:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 17:21:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 17:21:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 17:21:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 17:21:46] 
[2025-11-21 17:21:46] 2025-11-21 16:16:39,687 | INFO     | ***************************************
[2025-11-21 17:21:46] 2025-11-21 16:16:40,190 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/1
[2025-11-21 17:21:46] 2025-11-21 16:16:40,210 | INFO     | sufficient remaining disk space (3298785492992 B)
[2025-11-21 17:21:46] 2025-11-21 16:16:40,211 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 17:21:46] 2025-11-21 16:16:40,211 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 17:21:46] 2025-11-21 16:16:40,211 | INFO     | update_server=False
[2025-11-21 17:21:46] 2025-11-21 16:16:40,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 17:21:46] 2025-11-21 16:16:40,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:21:46] 2025-11-21 16:16:40,212 | INFO     | aborting loop
[2025-11-21 17:21:46] 2025-11-21 16:16:40,212 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 17:21:46] 2025-11-21 16:16:41,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 17:21:46] 2025-11-21 16:16:41,120 | INFO     | all data control threads have been joined
[2025-11-21 17:21:46] 2025-11-21 16:16:41,216 | INFO     | [job] retrieve thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:41,217 | INFO     | [job] job monitor thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:41,410 | INFO     | all job control threads have been joined
[2025-11-21 17:21:46] 2025-11-21 16:16:41,445 | INFO     | all payload control threads have been joined
[2025-11-21 17:21:46] 2025-11-21 16:16:41,477 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:41,611 | INFO     | [job] validate thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:41,760 | INFO     | [data] copytool_in thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:41,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,043 | INFO     | [payload] failed_post thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,128 | INFO     | [data] control thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,130 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,217 | INFO     | [data] copytool_out thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,415 | INFO     | [job] control thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:21:46] 2025-11-21 16:16:42,450 | INFO     | [payload] control thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:42,475 | INFO     | [payload] validate_post thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:43,422 | INFO     | [job] queue monitor thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:16:45,107 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 17:21:46] 2025-11-21 16:17:09,910 | INFO     | PID=124854 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 17:21:46] 2025-11-21 16:17:09,910 | INFO     | .. there are 7 such processes running
[2025-11-21 17:21:46] 2025-11-21 16:17:09,911 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 17:21:46] 2025-11-21 16:17:09,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 17:21:46] 2025-11-21 16:17:09,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 17:21:46] 2025-11-21 16:17:40,115 | INFO     | [monitor] cgroup control has ended
[2025-11-21 17:21:46] 2025-11-21 16:17:42,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22750726227776)>', '<ExcThread(monitor, started 22750483666688)>']
[2025-11-21 17:21:46] 2025-11-21 16:17:43,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 17:21:46] 2025-11-21 16:17:43,076 | INFO     | [monitor] control thread has ended
[2025-11-21 17:21:46] 2025-11-21 16:17:47,166 | INFO     | all workflow threads have been joined
[2025-11-21 17:21:46] 2025-11-21 16:17:47,166 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 17:21:46] 2025-11-21 16:17:47,166 | INFO     | traces error code: 0
[2025-11-21 17:21:46] 2025-11-21 16:17:47,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 17:21:46] 2025-11-21 16:17:47,324 [wrapper] ==== pilot stdout END ====
[2025-11-21 17:21:46] 2025-11-21 16:17:47,327 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 17:21:46] 2025-11-21 16:17:47,331 [wrapper] pilotpid: 124854
[2025-11-21 17:21:46] 2025-11-21 16:17:47,335 [wrapper] Pilot exit status: 0
[2025-11-21 17:21:46] 2025-11-21 16:17:47,349 [wrapper] pandaids: 6893858439
[2025-11-21 17:21:46] 2025-11-21 16:17:47,540 [wrapper] cleanup supervisor_pilot 1691722 124855
[2025-11-21 17:21:46] 2025-11-21 16:17:47,544 [wrapper] Test setup, not cleaning
[2025-11-21 17:21:46] 2025-11-21 16:17:47,548 [wrapper] apfmon messages muted
[2025-11-21 17:21:46] 2025-11-21 16:17:47,552 [wrapper] ==== wrapper stdout END ====
[2025-11-21 17:21:46] 2025-11-21 16:17:47,556 [wrapper] ==== wrapper stderr END ====
[2025-11-21 17:21:46]  *** Error codes and diagnostics ***
[2025-11-21 17:21:46]     "exeErrorCode": 0,
[2025-11-21 17:21:46]     "exeErrorDiag": "",
[2025-11-21 17:21:46]     "pilotErrorCode": 0,
[2025-11-21 17:21:46]     "pilotErrorDiag": "",
[2025-11-21 17:21:46]  *** Listing of results directory ***
[2025-11-21 17:21:46] total 1328148
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:22 queuedata.json
[2025-11-21 17:21:46] -rwx------ 1 boinc boinc     36292 Nov 20 14:22 runpilot2-wrapper.sh
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 17:21:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:09 run_atlas
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:09 job.xml
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc 410882153 Nov 21 00:17 EVNT.47493127._000515.pool.root.1
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc      6683 Nov 21 00:17 init_data.xml
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:17 start_atlas.sh
[2025-11-21 17:21:46] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:17 shared
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc    590101 Nov 21 00:17 input.tar.gz
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:17 boinc_lockfile
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc      2786 Nov 21 00:17 pandaJob.out
[2025-11-21 17:21:46] -rw------- 1 boinc boinc    989817 Nov 21 00:17 agis_schedconf.cvmfs.json
[2025-11-21 17:21:46] drwx------ 5 boinc boinc      4096 Nov 21 00:17 pilot3
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc       532 Nov 21 17:07 boinc_task_state.xml
[2025-11-21 17:21:46] -rw------- 1 boinc boinc 925452879 Nov 21 17:15 HITS.47523449._005145.pool.root.1
[2025-11-21 17:21:46] -rw------- 1 boinc boinc      1039 Nov 21 17:16 memory_monitor_summary.json
[2025-11-21 17:21:46] -rw------- 1 boinc boinc   1526164 Nov 21 17:16 agis_ddmendpoints.agis.ALL.json
[2025-11-21 17:21:46] -rw------- 1 boinc boinc   1719158 Nov 21 17:16 log.47523449._005145.job.log.tgz.1
[2025-11-21 17:21:46] -rw------- 1 boinc boinc      8592 Nov 21 17:16 heartbeat.json
[2025-11-21 17:21:46] -rw------- 1 boinc boinc        95 Nov 21 17:17 pilot_heartbeat.json
[2025-11-21 17:21:46] -rw------- 1 boinc boinc      4834 Nov 21 17:17 pilotlog.txt
[2025-11-21 17:21:46] -rw------- 1 boinc boinc   8160824 Nov 21 17:17 log.47523449._005145.job.log.1
[2025-11-21 17:21:46] -rw------- 1 boinc boinc       353 Nov 21 17:17 output.list
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc       620 Nov 21 17:17 runtime_log
[2025-11-21 17:21:46] -rw------- 1 boinc boinc   9902080 Nov 21 17:17 result.tar.gz
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc      9206 Nov 21 17:17 runtime_log.err
[2025-11-21 17:21:46] -rw------- 1 boinc boinc       671 Nov 21 17:17 euSKDmRnJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGiGKDmx06Fam.diag
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc        28 Nov 21 17:21 wrapper_checkpoint.txt
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc      8192 Nov 21 17:21 boinc_mmap_file
[2025-11-21 17:21:46] -rw-r--r-- 1 boinc boinc     21116 Nov 21 17:21 stderr.txt
[2025-11-21 17:21:46] HITS file was successfully produced:
[2025-11-21 17:21:46] -rw------- 1 boinc boinc 925452879 Nov 21 17:15 shared/HITS.pool.root.1
[2025-11-21 17:21:46]  *** Contents of shared directory: ***
[2025-11-21 17:21:46] total 1315296
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc 410882153 Nov 21 00:17 ATLAS.root_0
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:17 start_atlas.sh
[2025-11-21 17:21:46] -rw-r--r-- 2 boinc boinc    590101 Nov 21 00:17 input.tar.gz
[2025-11-21 17:21:46] -rw------- 1 boinc boinc 925452879 Nov 21 17:15 HITS.pool.root.1
[2025-11-21 17:21:46] -rw------- 1 boinc boinc   9902080 Nov 21 17:17 result.tar.gz
17:21:47 (120627): run_atlas exited; CPU time 236426.991151
17:21:47 (120627): called boinc_finish(0)

</stderr_txt>
]]>

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