Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:48:14 (1056108): wrapper (7.7.26015): starting
07:48:14 (1056108): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 07:48:14] Arguments: --nthreads 4
[2025-11-23 07:48:14] Threads: 4
[2025-11-23 07:48:14] Checking for CVMFS
[2025-11-23 07:48:14] No cvmfs_config command found, will try listing directly
[2025-11-23 07:48:14] CVMFS is ok
[2025-11-23 07:48:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:48:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:48:14] Further information can be found at the LHC@home message board.
[2025-11-23 07:48:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:48:14] Checking for apptainer binary...
[2025-11-23 07:48:14] which: no apptainer in ((null))
[2025-11-23 07:48:14] apptainer is not installed, using version from CVMFS
[2025-11-23 07:48:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:48:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-23 07:48:14] apptainer works
[2025-11-23 07:48:15] Set ATHENA_PROC_NUMBER=4
[2025-11-23 07:48:15] Set ATHENA_CORE_NUMBER=4
[2025-11-23 07:48:15] Starting ATLAS job with PandaID=6893858627
[2025-11-23 07:48:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:16:54]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:16:54] 2025-11-24 01:01:25,080 | INFO     | time since job start (65580s) is within the limit (172800.0s)
[2025-11-24 02:16:54] 2025-11-24 01:01:25,955 | INFO     | monitor loop #4666: job 0:6893858627 is in state 'finished'
[2025-11-24 02:16:54] 2025-11-24 01:01:25,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:16:54] 2025-11-24 01:01:25,969 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 02:16:54] 2025-11-24 01:01:25,979 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2578.046015624999
[2025-11-24 02:16:54] 2025-11-24 01:01:25,992 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6893858627/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:16:54] 2025-11-24 01:01:25,993 | INFO     | extracted standard info from prmon json
[2025-11-24 02:16:54] 2025-11-24 01:01:25,993 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:16:54] 2025-11-24 01:01:25,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:16:54] 2025-11-24 01:01:26,012 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:16:54] 2025-11-24 01:01:26,014 | INFO     | sum of square deviations: 385216286755.54987
[2025-11-24 02:16:54] 2025-11-24 01:01:26,037 | INFO     | sum of deviations: 1038377726733.4122
[2025-11-24 02:16:54] 2025-11-24 01:01:26,038 | INFO     | mean x: 1763913290.0204651
[2025-11-24 02:16:54] 2025-11-24 01:01:26,038 | INFO     | mean y: 2300141.5720930235
[2025-11-24 02:16:54] 2025-11-24 01:01:26,038 | INFO     | intersect: -4752452799.101479
[2025-11-24 02:16:54] 2025-11-24 01:01:26,039 | INFO     | chi2: 5.0176582826420475
[2025-11-24 02:16:54] 2025-11-24 01:01:26,041 | INFO     | sum of square deviations: 379866155943.0474
[2025-11-24 02:16:54] 2025-11-24 01:01:26,064 | INFO     | sum of deviations: 1326508267297.7234
[2025-11-24 02:16:54] 2025-11-24 01:01:26,065 | INFO     | mean x: 1763913137.5205607
[2025-11-24 02:16:54] 2025-11-24 01:01:26,065 | INFO     | mean y: 2308355.3308411213
[2025-11-24 02:16:54] 2025-11-24 01:01:26,065 | INFO     | intersect: -6157348995.314785
[2025-11-24 02:16:54] 2025-11-24 01:01:26,066 | INFO     | chi2: 1.8968228484597154
[2025-11-24 02:16:54] 2025-11-24 01:01:26,066 | INFO     | current chi2=1.8968228484597154 (change=62.19705006573418 %)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,068 | INFO     | sum of square deviations: 374565793505.5454
[2025-11-24 02:16:54] 2025-11-24 01:01:26,091 | INFO     | sum of deviations: 1359996026965.5005
[2025-11-24 02:16:54] 2025-11-24 01:01:26,092 | INFO     | mean x: 1763912985.0206573
[2025-11-24 02:16:54] 2025-11-24 01:01:26,092 | INFO     | mean y: 2309315.568075117
[2025-11-24 02:16:54] 2025-11-24 01:01:26,092 | INFO     | intersect: -6402212114.671482
[2025-11-24 02:16:54] 2025-11-24 01:01:26,093 | INFO     | chi2: 1.7451079473495057
[2025-11-24 02:16:54] 2025-11-24 01:01:26,093 | INFO     | current chi2=1.7451079473495057 (change=7.998369549028121 %)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,094 | INFO     | right removable region: 1064
[2025-11-24 02:16:54] 2025-11-24 01:01:26,095 | INFO     | sum of square deviations: 379866142523.0475
[2025-11-24 02:16:54] 2025-11-24 01:01:26,119 | INFO     | sum of deviations: 851497018635.3745
[2025-11-24 02:16:54] 2025-11-24 01:01:26,119 | INFO     | mean x: 1763913442.5205607
[2025-11-24 02:16:54] 2025-11-24 01:01:26,119 | INFO     | mean y: 2305459.778504673
[2025-11-24 02:16:54] 2025-11-24 01:01:26,119 | INFO     | intersect: -3951632175.8874297
[2025-11-24 02:16:54] 2025-11-24 01:01:26,121 | INFO     | chi2: 3.374390712185283
[2025-11-24 02:16:54] 2025-11-24 01:01:26,121 | INFO     | current chi2=3.374390712185283 (change=32.74969074999468 %)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,122 | INFO     | sum of square deviations: 374565766665.5454
[2025-11-24 02:16:54] 2025-11-24 01:01:26,146 | INFO     | sum of deviations: 832946279059.7273
[2025-11-24 02:16:54] 2025-11-24 01:01:26,146 | INFO     | mean x: 1763913595.0206573
[2025-11-24 02:16:54] 2025-11-24 01:01:26,147 | INFO     | mean y: 2305993.103286385
[2025-11-24 02:16:54] 2025-11-24 01:01:26,147 | INFO     | intersect: -3920223496.536997
[2025-11-24 02:16:54] 2025-11-24 01:01:26,148 | INFO     | chi2: 3.372637073501709
[2025-11-24 02:16:54] 2025-11-24 01:01:26,148 | INFO     | current chi2=3.372637073501709 (change=0.05196904665609083 %)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,148 | INFO     | left removable region: 20
[2025-11-24 02:16:54] 2025-11-24 01:01:26,150 | INFO     | sum of square deviations: 352842439772.53674
[2025-11-24 02:16:54] 2025-11-24 01:01:26,172 | INFO     | sum of deviations: 1139860030804.9155
[2025-11-24 02:16:54] 2025-11-24 01:01:26,172 | INFO     | mean x: 1763913564.5210729
[2025-11-24 02:16:54] 2025-11-24 01:01:26,173 | INFO     | mean y: 2315564.7538314178
[2025-11-24 02:16:54] 2025-11-24 01:01:26,173 | INFO     | intersect: -5696019848.889607
[2025-11-24 02:16:54] 2025-11-24 01:01:26,174 | INFO     | chi2: 0.07512222164034246
[2025-11-24 02:16:54] 2025-11-24 01:01:26,174 | INFO     | current memory leak: 3.23 B/s (using 1044 data points, chi2=0.08)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | could have reported an average CPU frequency of 2546 MHz (40 samples)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | ..............................
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . Timing measurements:
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . get job = 0 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . initial setup = 1 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . payload setup = 6 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . stage-in = 0 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . payload execution = 65543 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . stage-out = 2 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,176 | INFO     | . log creation = 0 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,177 | INFO     | ..............................
[2025-11-24 02:16:54] 2025-11-24 01:01:26,277 | INFO     | 
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | job summary report
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | --------------------------------------------------
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | PanDA job id: 6893858627
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | task id: 47523449
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | errors: (none)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | pilot state: finished 
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | transexitcode: 0
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | exeerrorcode: 0
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | exeerrordiag: 
[2025-11-24 02:16:54] 2025-11-24 01:01:26,278 | INFO     | exitcode: 0
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | exitmsg: OK
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | cpuconsumptiontime: 258172 s
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | nevents: 1000
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | neventsw: 0
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | pid: 1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | pgrp: 1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | corecount: 4
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | event service: False
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | sizes: {0: 2298647, 1: 2298846, 5: 2299108, 11: 2299164, 65553: 2354285, 65557: 2363485, 65564: 2363703}
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | --------------------------------------------------
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | 
[2025-11-24 02:16:54] 2025-11-24 01:01:26,279 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-11-24 02:16:54] 2025-11-24 01:01:26,301 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,301 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:16:54] 2025-11-24 01:01:26,303 | INFO     | job 6893858627 has completed (purged errors)
[2025-11-24 02:16:54] 2025-11-24 01:01:26,304 | INFO     | overall cleanup function is called
[2025-11-24 02:16:54] 2025-11-24 01:01:27,316 | INFO     | --- collectZombieJob: --- 10, [1067212]
[2025-11-24 02:16:54] 2025-11-24 01:01:27,317 | INFO     | zombie collector waiting for pid 1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:27,317 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:16:54] 2025-11-24 01:01:27,317 | INFO     | collected zombie processes
[2025-11-24 02:16:54] 2025-11-24 01:01:27,317 | INFO     | will attempt to kill all subprocesses of pid=1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:27,751 | INFO     | process IDs to be killed: [1067212] (in reverse order)
[2025-11-24 02:16:54] 2025-11-24 01:01:27,880 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:16:54] 2025-11-24 01:01:27,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:16:54] 2025-11-24 01:01:27,895 | INFO     | did not find any defunct processes belonging to 1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:27,909 | INFO     | did not find any defunct processes belonging to 1067212
[2025-11-24 02:16:54] 2025-11-24 01:01:27,912 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:16:54] 2025-11-24 01:01:27,912 | INFO     | ready for new job
[2025-11-24 02:16:54] 2025-11-24 01:01:27,912 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:16:54] 2025-11-24 01:01:27,918 | INFO     | ***************************************
[2025-11-24 02:16:54] 2025-11-24 01:01:27,918 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:16:54] 2025-11-24 01:01:27,918 | INFO     | ***************************************
[2025-11-24 02:16:54] 2025-11-24 01:01:27,918 | INFO     | 
[2025-11-24 02:16:54] 2025-11-24 01:01:27,923 | INFO     | architecture information:
[2025-11-24 02:16:54] 2025-11-24 01:01:27,923 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:16:54] 2025-11-24 01:01:27,940 | INFO     | cat /etc/os-release:
[2025-11-24 02:16:54] NAME="CentOS Linux"
[2025-11-24 02:16:54] VERSION="7 (Core)"
[2025-11-24 02:16:54] ID="centos"
[2025-11-24 02:16:54] ID_LIKE="rhel fedora"
[2025-11-24 02:16:54] VERSION_ID="7"
[2025-11-24 02:16:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:16:54] ANSI_COLOR="0;31"
[2025-11-24 02:16:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:16:54] HOME_URL="https://www.centos.org/"
[2025-11-24 02:16:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:16:54] 
[2025-11-24 02:16:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:16:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:16:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:16:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:16:54] 
[2025-11-24 02:16:54] 2025-11-24 01:01:27,941 | INFO     | ***************************************
[2025-11-24 02:16:54] 2025-11-24 01:01:28,444 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-11-24 02:16:54] 2025-11-24 01:01:28,461 | INFO     | sufficient remaining disk space (696891998208 B)
[2025-11-24 02:16:54] 2025-11-24 01:01:28,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:16:54] 2025-11-24 01:01:28,462 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:16:54] 2025-11-24 01:01:28,462 | INFO     | update_server=False
[2025-11-24 02:16:54] 2025-11-24 01:01:28,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:16:54] 2025-11-24 01:01:28,845 | INFO     | all data control threads have been joined
[2025-11-24 02:16:54] 2025-11-24 01:01:29,219 | INFO     | all payload control threads have been joined
[2025-11-24 02:16:54] 2025-11-24 01:01:29,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:16:54] 2025-11-24 01:01:29,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:16:54] 2025-11-24 01:01:29,453 | INFO     | all job control threads have been joined
[2025-11-24 02:16:54] 2025-11-24 01:01:29,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:16:54] 2025-11-24 01:01:29,463 | INFO     | aborting loop
[2025-11-24 02:16:54] 2025-11-24 01:01:29,468 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:29,597 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:29,663 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:29,668 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:29,851 | INFO     | [data] control thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:29,908 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,224 | INFO     | [payload] control thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,407 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,458 | INFO     | [job] control thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,468 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,675 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,682 | INFO     | [job] validate thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:30,893 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:31,287 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:16:54] 2025-11-24 01:01:31,317 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:32,292 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:33,419 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:16:54] 2025-11-24 01:01:58,709 | INFO     | PID=1059899 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 02:16:54] 2025-11-24 01:01:58,709 | INFO     | .. there are 6 such processes running
[2025-11-24 02:16:54] 2025-11-24 01:01:58,710 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:16:54] 2025-11-24 01:01:58,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:16:54] 2025-11-24 01:01:58,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:16:54] 2025-11-24 01:02:11,363 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:16:54] 2025-11-24 01:02:12,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22992070440768)>', '<ExcThread(monitor, started 22991492601600)>']
[2025-11-24 02:16:54] 2025-11-24 01:02:13,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:16:54] 2025-11-24 01:02:13,784 | INFO     | [monitor] control thread has ended
[2025-11-24 02:16:54] 2025-11-24 01:02:17,848 | INFO     | all workflow threads have been joined
[2025-11-24 02:16:54] 2025-11-24 01:02:17,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:16:54] 2025-11-24 01:02:17,849 | INFO     | traces error code: 0
[2025-11-24 02:16:54] 2025-11-24 01:02:17,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:16:54] 2025-11-24 01:02:17,995 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:16:54] 2025-11-24 01:02:17,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:16:54] 2025-11-24 01:02:18,001 [wrapper] pilotpid: 1059899
[2025-11-24 02:16:54] 2025-11-24 01:02:18,003 [wrapper] Pilot exit status: 0
[2025-11-24 02:16:54] 2025-11-24 01:02:18,013 [wrapper] pandaids: 6893858627
[2025-11-24 02:16:54] 2025-11-24 01:02:18,097 [wrapper] cleanup supervisor_pilot 2024285 1059900
[2025-11-24 02:16:54] 2025-11-24 01:02:18,100 [wrapper] Test setup, not cleaning
[2025-11-24 02:16:54] 2025-11-24 01:02:18,104 [wrapper] apfmon messages muted
[2025-11-24 02:16:54] 2025-11-24 01:02:18,108 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:16:54] 2025-11-24 01:02:18,111 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:16:54]  *** Error codes and diagnostics ***
[2025-11-24 02:16:54]     "exeErrorCode": 0,
[2025-11-24 02:16:54]     "exeErrorDiag": "",
[2025-11-24 02:16:54]     "pilotErrorCode": 0,
[2025-11-24 02:16:54]     "pilotErrorDiag": "",
[2025-11-24 02:16:54]  *** Listing of results directory ***
[2025-11-24 02:16:54] total 1331668
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 02:16:54] -rwx------ 1 boinc boinc     36292 Nov 20 14:23 runpilot2-wrapper.sh
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:23 queuedata.json
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc       100 Nov 23 07:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:16:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 07:48 run_atlas
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc       105 Nov 23 07:48 job.xml
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc      6636 Nov 23 07:48 init_data.xml
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc 410549875 Nov 23 07:48 EVNT.47493127._000516.pool.root.1
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:48 start_atlas.sh
[2025-11-24 02:16:54] drwxrwx--x 2 boinc boinc      4096 Nov 23 07:48 shared
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc    590102 Nov 23 07:48 input.tar.gz
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc         0 Nov 23 07:48 boinc_lockfile
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc      2786 Nov 23 07:48 pandaJob.out
[2025-11-24 02:16:54] -rw------- 1 boinc boinc    989784 Nov 23 07:48 agis_schedconf.cvmfs.json
[2025-11-24 02:16:54] drwx------ 5 boinc boinc      4096 Nov 23 07:48 pilot3
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc       530 Nov 24 01:53 boinc_task_state.xml
[2025-11-24 02:16:54] -rw------- 1 boinc boinc 927246718 Nov 24 02:00 HITS.47523449._005158.pool.root.1
[2025-11-24 02:16:54] -rw------- 1 boinc boinc      1044 Nov 24 02:01 memory_monitor_summary.json
[2025-11-24 02:16:54] -rw------- 1 boinc boinc   1526164 Nov 24 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:16:54] -rw------- 1 boinc boinc   1798054 Nov 24 02:01 log.47523449._005158.job.log.tgz.1
[2025-11-24 02:16:54] -rw------- 1 boinc boinc      8630 Nov 24 02:01 heartbeat.json
[2025-11-24 02:16:54] -rw------- 1 boinc boinc        95 Nov 24 02:01 pilot_heartbeat.json
[2025-11-24 02:16:54] -rw------- 1 boinc boinc      4833 Nov 24 02:02 pilotlog.txt
[2025-11-24 02:16:54] -rw------- 1 boinc boinc   9156506 Nov 24 02:02 log.47523449._005158.job.log.1
[2025-11-24 02:16:54] -rw------- 1 boinc boinc       353 Nov 24 02:02 output.list
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc       620 Nov 24 02:02 runtime_log
[2025-11-24 02:16:54] -rw------- 1 boinc boinc  10977280 Nov 24 02:02 result.tar.gz
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc      9206 Nov 24 02:02 runtime_log.err
[2025-11-24 02:16:54] -rw------- 1 boinc boinc       670 Nov 24 02:02 iHwKDmGoJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPiGKDmDQ69mn.diag
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc        28 Nov 24 02:16 wrapper_checkpoint.txt
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc      8192 Nov 24 02:16 boinc_mmap_file
[2025-11-24 02:16:54] -rw-r--r-- 1 boinc boinc     21111 Nov 24 02:16 stderr.txt
[2025-11-24 02:16:54] HITS file was successfully produced:
[2025-11-24 02:16:54] -rw------- 1 boinc boinc 927246718 Nov 24 02:00 shared/HITS.pool.root.1
[2025-11-24 02:16:54]  *** Contents of shared directory: ***
[2025-11-24 02:16:54] total 1317768
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc 410549875 Nov 23 07:48 ATLAS.root_0
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:48 start_atlas.sh
[2025-11-24 02:16:54] -rw-r--r-- 2 boinc boinc    590102 Nov 23 07:48 input.tar.gz
[2025-11-24 02:16:54] -rw------- 1 boinc boinc 927246718 Nov 24 02:00 HITS.pool.root.1
[2025-11-24 02:16:54] -rw------- 1 boinc boinc  10977280 Nov 24 02:02 result.tar.gz
02:16:56 (1056108): run_atlas exited; CPU time 260782.076265
02:16:56 (1056108): called boinc_finish(0)

</stderr_txt>
]]>

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