Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:18:41 (1297543): wrapper (7.7.26015): starting
16:18:41 (1297543): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 16:18:41] Arguments: --nthreads 4
[2025-11-23 16:18:41] Threads: 4
[2025-11-23 16:18:41] Checking for CVMFS
[2025-11-23 16:18:41] No cvmfs_config command found, will try listing directly
[2025-11-23 16:18:41] CVMFS is ok
[2025-11-23 16:18:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:18:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 16:18:41] Further information can be found at the LHC@home message board.
[2025-11-23 16:18:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:18:41] Checking for apptainer binary...
[2025-11-23 16:18:41] which: no apptainer in ((null))
[2025-11-23 16:18:41] apptainer is not installed, using version from CVMFS
[2025-11-23 16:18:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:18:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-11-23 16:18:42] apptainer works
[2025-11-23 16:18:42] Set ATHENA_PROC_NUMBER=4
[2025-11-23 16:18:42] Set ATHENA_CORE_NUMBER=4
[2025-11-23 16:18:42] Starting ATLAS job with PandaID=6893858633
[2025-11-23 16:18:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:59:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:59:18] 2025-11-24 06:57:50,924 | INFO     | monitor loop #3798: job 0:6893858633 is in state 'finished'
[2025-11-24 07:59:18] 2025-11-24 06:57:50,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:59:18] 2025-11-24 06:57:52,414 | INFO     | time since job start (56331s) is within the limit (172800.0s)
[2025-11-24 07:59:18] 2025-11-24 06:57:52,880 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 07:59:18] 2025-11-24 06:57:52,899 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2682.5323593750004
[2025-11-24 07:59:18] 2025-11-24 06:57:52,922 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893858633/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:59:18] 2025-11-24 06:57:52,923 | INFO     | extracted standard info from prmon json
[2025-11-24 07:59:18] 2025-11-24 06:57:52,923 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:59:18] 2025-11-24 06:57:52,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:59:18] 2025-11-24 06:57:52,937 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:59:18] 2025-11-24 06:57:52,938 | INFO     | sum of square deviations: 243827384891.93042
[2025-11-24 07:59:18] 2025-11-24 06:57:52,957 | INFO     | sum of deviations: 459745953442.6139
[2025-11-24 07:59:18] 2025-11-24 06:57:52,957 | INFO     | mean x: 1763939311.0086675
[2025-11-24 07:59:18] 2025-11-24 06:57:52,957 | INFO     | mean y: 2272841.548212351
[2025-11-24 07:59:18] 2025-11-24 06:57:52,957 | INFO     | intersect: -3323702871.614704
[2025-11-24 07:59:18] 2025-11-24 06:57:52,958 | INFO     | chi2: 4.55967234511507
[2025-11-24 07:59:18] 2025-11-24 06:57:52,959 | INFO     | sum of square deviations: 239886280879.43057
[2025-11-24 07:59:18] 2025-11-24 06:57:52,978 | INFO     | sum of deviations: 663817256541.6903
[2025-11-24 07:59:18] 2025-11-24 06:57:52,978 | INFO     | mean x: 1763939158.5087147
[2025-11-24 07:59:18] 2025-11-24 06:57:52,978 | INFO     | mean y: 2280730.788671024
[2025-11-24 07:59:18] 2025-11-24 06:57:52,979 | INFO     | intersect: -4878920681.042947
[2025-11-24 07:59:18] 2025-11-24 06:57:52,980 | INFO     | chi2: 2.2044812586143343
[2025-11-24 07:59:18] 2025-11-24 06:57:52,980 | INFO     | current chi2=2.2044812586143343 (change=51.65263879155552 %)
[2025-11-24 07:59:18] 2025-11-24 06:57:52,981 | INFO     | sum of square deviations: 235987875341.93253
[2025-11-24 07:59:18] 2025-11-24 06:57:52,999 | INFO     | sum of deviations: 710035631629.6388
[2025-11-24 07:59:18] 2025-11-24 06:57:53,000 | INFO     | mean x: 1763939006.0087624
[2025-11-24 07:59:18] 2025-11-24 06:57:53,000 | INFO     | mean y: 2282536.9200438117
[2025-11-24 07:59:18] 2025-11-24 06:57:53,000 | INFO     | intersect: -5305022105.205525
[2025-11-24 07:59:18] 2025-11-24 06:57:53,001 | INFO     | chi2: 2.0451973219813584
[2025-11-24 07:59:18] 2025-11-24 06:57:53,001 | INFO     | current chi2=2.0451973219813584 (change=7.2254611378777 %)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,001 | INFO     | right removable region: 912
[2025-11-24 07:59:18] 2025-11-24 06:57:53,002 | INFO     | sum of square deviations: 239886275999.43054
[2025-11-24 07:59:18] 2025-11-24 06:57:53,022 | INFO     | sum of deviations: 291478171609.6203
[2025-11-24 07:59:18] 2025-11-24 06:57:53,022 | INFO     | mean x: 1763939463.5087147
[2025-11-24 07:59:18] 2025-11-24 06:57:53,023 | INFO     | mean y: 2279340.1100217863
[2025-11-24 07:59:18] 2025-11-24 06:57:53,023 | INFO     | intersect: -2141027305.9725378
[2025-11-24 07:59:18] 2025-11-24 06:57:53,024 | INFO     | chi2: 2.647434983171274
[2025-11-24 07:59:18] 2025-11-24 06:57:53,024 | INFO     | current chi2=2.647434983171274 (change=41.9380432892824 %)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,025 | INFO     | sum of square deviations: 235987921700.94623
[2025-11-24 07:59:18] 2025-11-24 06:57:53,044 | INFO     | sum of deviations: 282302715147.1892
[2025-11-24 07:59:18] 2025-11-24 06:57:53,045 | INFO     | mean x: 1763939616.007667
[2025-11-24 07:59:18] 2025-11-24 06:57:53,045 | INFO     | mean y: 2279698.544359255
[2025-11-24 07:59:18] 2025-11-24 06:57:53,045 | INFO     | intersect: -2107849240.9599972
[2025-11-24 07:59:18] 2025-11-24 06:57:53,046 | INFO     | chi2: 2.646101395829681
[2025-11-24 07:59:18] 2025-11-24 06:57:53,046 | INFO     | current chi2=2.646101395829681 (change=0.05037280802248393 %)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,046 | INFO     | left removable region: 20
[2025-11-24 07:59:18] 2025-11-24 06:57:53,047 | INFO     | sum of square deviations: 220075627498.94498
[2025-11-24 07:59:18] 2025-11-24 06:57:53,065 | INFO     | sum of deviations: 531128940082.7793
[2025-11-24 07:59:18] 2025-11-24 06:57:53,065 | INFO     | mean x: 1763939585.5078475
[2025-11-24 07:59:18] 2025-11-24 06:57:53,065 | INFO     | mean y: 2289919.817264574
[2025-11-24 07:59:18] 2025-11-24 06:57:53,065 | INFO     | intersect: -4254789217.33222
[2025-11-24 07:59:18] 2025-11-24 06:57:53,066 | INFO     | chi2: 0.10393780901213727
[2025-11-24 07:59:18] 2025-11-24 06:57:53,066 | INFO     | current memory leak: 2.41 B/s (using 892 data points, chi2=0.10)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,068 | INFO     | could have reported an average CPU frequency of 2686 MHz (35 samples)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,069 | INFO     | ..............................
[2025-11-24 07:59:18] 2025-11-24 06:57:53,069 | INFO     | . Timing measurements:
[2025-11-24 07:59:18] 2025-11-24 06:57:53,069 | INFO     | . get job = 0 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,069 | INFO     | . initial setup = 1 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,069 | INFO     | . payload setup = 9 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,070 | INFO     | . stage-in = 0 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,070 | INFO     | . payload execution = 56276 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,070 | INFO     | . stage-out = 2 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,070 | INFO     | . log creation = 0 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,070 | INFO     | ..............................
[2025-11-24 07:59:18] 2025-11-24 06:57:53,172 | INFO     | 
[2025-11-24 07:59:18] 2025-11-24 06:57:53,172 | INFO     | job summary report
[2025-11-24 07:59:18] 2025-11-24 06:57:53,172 | INFO     | --------------------------------------------------
[2025-11-24 07:59:18] 2025-11-24 06:57:53,172 | INFO     | PanDA job id: 6893858633
[2025-11-24 07:59:18] 2025-11-24 06:57:53,172 | INFO     | task id: 47523449
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | errors: (none)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | pilot state: finished 
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | transexitcode: 0
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | exeerrorcode: 0
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | exeerrordiag: 
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | exitcode: 0
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | exitmsg: OK
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | cpuconsumptiontime: 221417 s
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | nevents: 1000
[2025-11-24 07:59:18] 2025-11-24 06:57:53,173 | INFO     | neventsw: 0
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | pid: 1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | pgrp: 1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | corecount: 4
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | event service: False
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | sizes: {0: 2298819, 11: 2298819, 12: 2299109, 22: 2299137, 56290: 2352233, 56293: 2361251, 56295: 2361435, 56302: 2361681}
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | --------------------------------------------------
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | 
[2025-11-24 07:59:18] 2025-11-24 06:57:53,174 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,206 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,206 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:59:18] 2025-11-24 06:57:53,206 | INFO     | job 6893858633 has completed (purged errors)
[2025-11-24 07:59:18] 2025-11-24 06:57:53,206 | INFO     | overall cleanup function is called
[2025-11-24 07:59:18] 2025-11-24 06:57:54,227 | INFO     | --- collectZombieJob: --- 10, [1308999]
[2025-11-24 07:59:18] 2025-11-24 06:57:54,227 | INFO     | zombie collector waiting for pid 1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:54,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:59:18] 2025-11-24 06:57:54,227 | INFO     | collected zombie processes
[2025-11-24 07:59:18] 2025-11-24 06:57:54,228 | INFO     | will attempt to kill all subprocesses of pid=1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:55,069 | INFO     | process IDs to be killed: [1308999] (in reverse order)
[2025-11-24 07:59:18] 2025-11-24 06:57:55,340 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:59:18] 2025-11-24 06:57:55,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:59:18] 2025-11-24 06:57:55,375 | INFO     | did not find any defunct processes belonging to 1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:55,408 | INFO     | did not find any defunct processes belonging to 1308999
[2025-11-24 07:59:18] 2025-11-24 06:57:55,410 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:59:18] 2025-11-24 06:57:55,410 | INFO     | ready for new job
[2025-11-24 07:59:18] 2025-11-24 06:57:55,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:59:18] 2025-11-24 06:57:55,417 | INFO     | ***************************************
[2025-11-24 07:59:18] 2025-11-24 06:57:55,417 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:59:18] 2025-11-24 06:57:55,417 | INFO     | ***************************************
[2025-11-24 07:59:18] 2025-11-24 06:57:55,417 | INFO     | 
[2025-11-24 07:59:18] 2025-11-24 06:57:55,426 | INFO     | architecture information:
[2025-11-24 07:59:18] 2025-11-24 06:57:55,427 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:59:18] 2025-11-24 06:57:55,447 | INFO     | cat /etc/os-release:
[2025-11-24 07:59:18] NAME="CentOS Linux"
[2025-11-24 07:59:18] VERSION="7 (Core)"
[2025-11-24 07:59:18] ID="centos"
[2025-11-24 07:59:18] ID_LIKE="rhel fedora"
[2025-11-24 07:59:18] VERSION_ID="7"
[2025-11-24 07:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:59:18] ANSI_COLOR="0;31"
[2025-11-24 07:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:59:18] HOME_URL="https://www.centos.org/"
[2025-11-24 07:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:59:18] 
[2025-11-24 07:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:59:18] 
[2025-11-24 07:59:18] 2025-11-24 06:57:55,448 | INFO     | ***************************************
[2025-11-24 07:59:18] 2025-11-24 06:57:55,950 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-24 07:59:18] 2025-11-24 06:57:55,978 | INFO     | sufficient remaining disk space (3313176150016 B)
[2025-11-24 07:59:18] 2025-11-24 06:57:55,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:59:18] 2025-11-24 06:57:55,978 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:59:18] 2025-11-24 06:57:55,978 | INFO     | update_server=False
[2025-11-24 07:59:18] 2025-11-24 06:57:55,979 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:59:18] 2025-11-24 06:57:56,321 | INFO     | all data control threads have been joined
[2025-11-24 07:59:18] 2025-11-24 06:57:56,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:59:18] 2025-11-24 06:57:56,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:59:18] 2025-11-24 06:57:56,896 | INFO     | all payload control threads have been joined
[2025-11-24 07:59:18] 2025-11-24 06:57:56,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:59:18] 2025-11-24 06:57:56,967 | INFO     | aborting loop
[2025-11-24 07:59:18] 2025-11-24 06:57:56,983 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:56,996 | INFO     | all job control threads have been joined
[2025-11-24 07:59:18] 2025-11-24 06:57:57,213 | INFO     | [job] validate thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,217 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,326 | INFO     | [data] control thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,528 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,565 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,607 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,901 | INFO     | [payload] control thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,948 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:57,973 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:58,001 | INFO     | [job] control thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:58,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:59:18] 2025-11-24 06:57:58,378 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:58,431 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:57:59,187 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:58:00,518 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:59:18] 2025-11-24 06:58:26,379 | INFO     | PID=1301561 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:59:18] 2025-11-24 06:58:26,379 | INFO     | .. there are 11 such processes running
[2025-11-24 07:59:18] 2025-11-24 06:58:26,379 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:59:18] 2025-11-24 06:58:26,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:59:18] 2025-11-24 06:58:26,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:59:18] 2025-11-24 06:58:32,952 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:59:18] 2025-11-24 06:58:33,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23421733771072)>', '<ExcThread(monitor, started 23421494720256)>']
[2025-11-24 07:59:18] 2025-11-24 06:58:34,418 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:59:18] 2025-11-24 06:58:34,419 | INFO     | [monitor] control thread has ended
[2025-11-24 07:59:18] 2025-11-24 06:58:38,913 | INFO     | all workflow threads have been joined
[2025-11-24 07:59:18] 2025-11-24 06:58:38,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:59:18] 2025-11-24 06:58:38,914 | INFO     | traces error code: 0
[2025-11-24 07:59:18] 2025-11-24 06:58:38,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:59:18] 2025-11-24 06:58:39,069 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:59:18] 2025-11-24 06:58:39,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:59:18] 2025-11-24 06:58:39,078 [wrapper] pilotpid: 1301561
[2025-11-24 07:59:18] 2025-11-24 06:58:39,085 [wrapper] Pilot exit status: 0
[2025-11-24 07:59:18] 2025-11-24 06:58:39,101 [wrapper] pandaids: 6893858633
[2025-11-24 07:59:18] 2025-11-24 06:58:39,288 [wrapper] cleanup supervisor_pilot 2891614 1301562
[2025-11-24 07:59:18] 2025-11-24 06:58:39,292 [wrapper] Test setup, not cleaning
[2025-11-24 07:59:18] 2025-11-24 06:58:39,296 [wrapper] apfmon messages muted
[2025-11-24 07:59:18] 2025-11-24 06:58:39,300 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:59:18] 2025-11-24 06:58:39,304 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:59:18]  *** Error codes and diagnostics ***
[2025-11-24 07:59:18]     "exeErrorCode": 0,
[2025-11-24 07:59:18]     "exeErrorDiag": "",
[2025-11-24 07:59:18]     "pilotErrorCode": 0,
[2025-11-24 07:59:18]     "pilotErrorDiag": "",
[2025-11-24 07:59:18]  *** Listing of results directory ***
[2025-11-24 07:59:18] total 1325560
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 07:59:18] -rwx------ 1 boinc boinc     36292 Nov 20 14:23 runpilot2-wrapper.sh
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:23 queuedata.json
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc       100 Nov 23 16:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:59:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 16:18 run_atlas
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc       105 Nov 23 16:18 job.xml
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc 411023876 Nov 23 16:18 EVNT.47493127._000517.pool.root.1
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc      6688 Nov 23 16:18 init_data.xml
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:18 start_atlas.sh
[2025-11-24 07:59:18] drwxrwx--x 2 boinc boinc      4096 Nov 23 16:18 shared
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:18 input.tar.gz
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:18 boinc_lockfile
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc      2786 Nov 23 16:18 pandaJob.out
[2025-11-24 07:59:18] -rw------- 1 boinc boinc    989785 Nov 23 16:18 agis_schedconf.cvmfs.json
[2025-11-24 07:59:18] drwx------ 5 boinc boinc      4096 Nov 23 16:19 pilot3
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc       532 Nov 24 07:47 boinc_task_state.xml
[2025-11-24 07:59:18] -rw------- 1 boinc boinc 923561969 Nov 24 07:57 HITS.47523449._005164.pool.root.1
[2025-11-24 07:59:18] -rw------- 1 boinc boinc        95 Nov 24 07:57 pilot_heartbeat.json
[2025-11-24 07:59:18] -rw------- 1 boinc boinc      1039 Nov 24 07:57 memory_monitor_summary.json
[2025-11-24 07:59:18] -rw------- 1 boinc boinc   1526164 Nov 24 07:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:59:18] -rw------- 1 boinc boinc   1665968 Nov 24 07:57 log.47523449._005164.job.log.tgz.1
[2025-11-24 07:59:18] -rw------- 1 boinc boinc      8592 Nov 24 07:57 heartbeat.json
[2025-11-24 07:59:18] -rw------- 1 boinc boinc      4836 Nov 24 07:58 pilotlog.txt
[2025-11-24 07:59:18] -rw------- 1 boinc boinc   7768844 Nov 24 07:58 log.47523449._005164.job.log.1
[2025-11-24 07:59:18] -rw------- 1 boinc boinc       353 Nov 24 07:58 output.list
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc       620 Nov 24 07:58 runtime_log
[2025-11-24 07:59:18] -rw------- 1 boinc boinc   9451520 Nov 24 07:58 result.tar.gz
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc      9223 Nov 24 07:58 runtime_log.err
[2025-11-24 07:59:18] -rw------- 1 boinc boinc       670 Nov 24 07:58 5l3KDmGoJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUiGKDmvTWvVo.diag
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc        28 Nov 24 07:59 wrapper_checkpoint.txt
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc      8192 Nov 24 07:59 boinc_mmap_file
[2025-11-24 07:59:18] -rw-r--r-- 1 boinc boinc     21128 Nov 24 07:59 stderr.txt
[2025-11-24 07:59:18] HITS file was successfully produced:
[2025-11-24 07:59:18] -rw------- 1 boinc boinc 923561969 Nov 24 07:57 shared/HITS.pool.root.1
[2025-11-24 07:59:18]  *** Contents of shared directory: ***
[2025-11-24 07:59:18] total 1313144
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc 411023876 Nov 23 16:18 ATLAS.root_0
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:18 start_atlas.sh
[2025-11-24 07:59:18] -rw-r--r-- 2 boinc boinc    590101 Nov 23 16:18 input.tar.gz
[2025-11-24 07:59:18] -rw------- 1 boinc boinc 923561969 Nov 24 07:57 HITS.pool.root.1
[2025-11-24 07:59:18] -rw------- 1 boinc boinc   9451520 Nov 24 07:58 result.tar.gz
07:59:19 (1297543): run_atlas exited; CPU time 224190.199021
07:59:19 (1297543): called boinc_finish(0)

</stderr_txt>
]]>

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