Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:25:46 (712494): wrapper (7.7.26015): starting
04:25:46 (712494): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 04:25:46] Arguments: --nthreads 4
[2025-11-23 04:25:46] Threads: 4
[2025-11-23 04:25:46] Checking for CVMFS
[2025-11-23 04:25:46] No cvmfs_config command found, will try listing directly
[2025-11-23 04:25:46] CVMFS is ok
[2025-11-23 04:25:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 04:25:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 04:25:46] Further information can be found at the LHC@home message board.
[2025-11-23 04:25:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 04:25:46] Checking for apptainer binary...
[2025-11-23 04:25:46] which: no apptainer in ((null))
[2025-11-23 04:25:46] apptainer is not installed, using version from CVMFS
[2025-11-23 04:25:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 04:25:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-11-23 04:25:46] apptainer works
[2025-11-23 04:25:46] Set ATHENA_PROC_NUMBER=4
[2025-11-23 04:25:46] Set ATHENA_CORE_NUMBER=4
[2025-11-23 04:25:46] Starting ATLAS job with PandaID=6893874631
[2025-11-23 04:25:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:24:36]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:24:36] 2025-11-23 19:58:42,762 | INFO     | monitor loop #4298: job 0:6893874631 is in state 'finished'
[2025-11-23 21:24:36] 2025-11-23 19:58:42,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 21:24:36] 2025-11-23 19:58:43,134 | INFO     | time since job start (59566s) is within the limit (172800.0s)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,296 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 21:24:36] 2025-11-23 19:58:44,307 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2633.364703125
[2025-11-23 21:24:36] 2025-11-23 19:58:44,322 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6893874631/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,323 | INFO     | extracted standard info from prmon json
[2025-11-23 21:24:36] 2025-11-23 19:58:44,323 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:24:36] 2025-11-23 19:58:44,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:24:36] 2025-11-23 19:58:44,344 | INFO     | fitting pss+swap vs Time
[2025-11-23 21:24:36] 2025-11-23 19:58:44,347 | INFO     | sum of square deviations: 288288549129.9989
[2025-11-23 21:24:36] 2025-11-23 19:58:44,369 | INFO     | sum of deviations: 790244493818.7936
[2025-11-23 21:24:36] 2025-11-23 19:58:44,370 | INFO     | mean x: 1763898120.5010245
[2025-11-23 21:24:36] 2025-11-23 19:58:44,370 | INFO     | mean y: 2296746.705942623
[2025-11-23 21:24:36] 2025-11-23 19:58:44,370 | INFO     | intersect: -4832826887.5480585
[2025-11-23 21:24:36] 2025-11-23 19:58:44,371 | INFO     | chi2: 3.9447612609304996
[2025-11-23 21:24:36] 2025-11-23 19:58:44,372 | INFO     | sum of square deviations: 283880541205.0028
[2025-11-23 21:24:36] 2025-11-23 19:58:44,391 | INFO     | sum of deviations: 996464908672.9753
[2025-11-23 21:24:36] 2025-11-23 19:58:44,391 | INFO     | mean x: 1763897968.00103
[2025-11-23 21:24:36] 2025-11-23 19:58:44,391 | INFO     | mean y: 2303878.025746653
[2025-11-23 21:24:36] 2025-11-23 19:58:44,391 | INFO     | intersect: -6189252683.518592
[2025-11-23 21:24:36] 2025-11-23 19:58:44,392 | INFO     | chi2: 1.8331504481706644
[2025-11-23 21:24:36] 2025-11-23 19:58:44,392 | INFO     | current chi2=1.8331504481706644 (change=53.52949578149486 %)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,394 | INFO     | sum of square deviations: 279517696917.49884
[2025-11-23 21:24:36] 2025-11-23 19:58:44,412 | INFO     | sum of deviations: 1007481765344.0781
[2025-11-23 21:24:36] 2025-11-23 19:58:44,412 | INFO     | mean x: 1763897815.5010352
[2025-11-23 21:24:36] 2025-11-23 19:58:44,412 | INFO     | mean y: 2304260.9213250517
[2025-11-23 21:24:36] 2025-11-23 19:58:44,412 | INFO     | intersect: -6355414426.107158
[2025-11-23 21:24:36] 2025-11-23 19:58:44,414 | INFO     | chi2: 1.787300571868296
[2025-11-23 21:24:36] 2025-11-23 19:58:44,414 | INFO     | current chi2=1.787300571868296 (change=2.501151847526914 %)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,414 | INFO     | right removable region: 965
[2025-11-23 21:24:36] 2025-11-23 19:58:44,416 | INFO     | sum of square deviations: 283880540595.0028
[2025-11-23 21:24:36] 2025-11-23 19:58:44,436 | INFO     | sum of deviations: 621289838908.5629
[2025-11-23 21:24:36] 2025-11-23 19:58:44,436 | INFO     | mean x: 1763898273.00103
[2025-11-23 21:24:36] 2025-11-23 19:58:44,436 | INFO     | mean y: 2302581.4376931
[2025-11-23 21:24:36] 2025-11-23 19:58:44,436 | INFO     | intersect: -3858096132.707891
[2025-11-23 21:24:36] 2025-11-23 19:58:44,438 | INFO     | chi2: 2.293176256099689
[2025-11-23 21:24:36] 2025-11-23 19:58:44,438 | INFO     | current chi2=2.293176256099689 (change=41.86780632806232 %)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,439 | INFO     | sum of square deviations: 279517695697.49884
[2025-11-23 21:24:36] 2025-11-23 19:58:44,458 | INFO     | sum of deviations: 605902708388.8722
[2025-11-23 21:24:36] 2025-11-23 19:58:44,459 | INFO     | mean x: 1763898425.5010352
[2025-11-23 21:24:36] 2025-11-23 19:58:44,459 | INFO     | mean y: 2303118.6283643893
[2025-11-23 21:24:36] 2025-11-23 19:58:44,459 | INFO     | intersect: -3821250272.748237
[2025-11-23 21:24:36] 2025-11-23 19:58:44,460 | INFO     | chi2: 2.2903734771147146
[2025-11-23 21:24:36] 2025-11-23 19:58:44,461 | INFO     | current chi2=2.2903734771147146 (change=0.12222257131431036 %)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,461 | INFO     | left removable region: 20
[2025-11-23 21:24:36] 2025-11-23 19:58:44,462 | INFO     | sum of square deviations: 261681686920.99933
[2025-11-23 21:24:36] 2025-11-23 19:58:44,483 | INFO     | sum of deviations: 814776320957.7106
[2025-11-23 21:24:36] 2025-11-23 19:58:44,483 | INFO     | mean x: 1763898395.001058
[2025-11-23 21:24:36] 2025-11-23 19:58:44,483 | INFO     | mean y: 2310890.288888889
[2025-11-23 21:24:36] 2025-11-23 19:58:44,483 | INFO     | intersect: -5489791601.6063595
[2025-11-23 21:24:36] 2025-11-23 19:58:44,484 | INFO     | chi2: 0.11285406764795947
[2025-11-23 21:24:36] 2025-11-23 19:58:44,485 | INFO     | current memory leak: 3.11 B/s (using 945 data points, chi2=0.11)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,486 | INFO     | could have reported an average CPU frequency of 2733 MHz (36 samples)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,486 | INFO     | ..............................
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . Timing measurements:
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . get job = 0 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . initial setup = 1 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . payload setup = 6 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . stage-in = 0 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . payload execution = 59532 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . stage-out = 2 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | . log creation = 0 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,487 | INFO     | ..............................
[2025-11-23 21:24:36] 2025-11-23 19:58:44,660 | INFO     | 
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | job summary report
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | --------------------------------------------------
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | PanDA job id: 6893874631
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | task id: 47523449
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | errors: (none)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | pilot state: finished 
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | transexitcode: 0
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | exeerrorcode: 0
[2025-11-23 21:24:36] 2025-11-23 19:58:44,661 | INFO     | exeerrordiag: 
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | exitcode: 0
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | exitmsg: OK
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | cpuconsumptiontime: 235852 s
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | nevents: 1000
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | neventsw: 0
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | pid: 725359
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | pgrp: 725359
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | corecount: 4
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | event service: False
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | sizes: {0: 2298646, 1: 2298845, 5: 2299107, 12: 2299163, 59541: 2351287, 59545: 2360303, 59547: 2360487, 59552: 2360733}
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | --------------------------------------------------
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | 
[2025-11-23 21:24:36] 2025-11-23 19:58:44,662 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-23 21:24:36] 2025-11-23 19:58:44,683 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,683 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,683 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,683 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,683 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,684 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,685 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:24:36] 2025-11-23 19:58:44,685 | INFO     | job 6893874631 has completed (purged errors)
[2025-11-23 21:24:36] 2025-11-23 19:58:44,685 | INFO     | overall cleanup function is called
[2025-11-23 21:24:36] 2025-11-23 19:58:45,695 | INFO     | --- collectZombieJob: --- 10, [725359]
[2025-11-23 21:24:36] 2025-11-23 19:58:45,695 | INFO     | zombie collector waiting for pid 725359
[2025-11-23 21:24:36] 2025-11-23 19:58:45,695 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:24:36] 2025-11-23 19:58:45,695 | INFO     | collected zombie processes
[2025-11-23 21:24:36] 2025-11-23 19:58:45,695 | INFO     | will attempt to kill all subprocesses of pid=725359
[2025-11-23 21:24:36] 2025-11-23 19:58:46,005 | INFO     | process IDs to be killed: [725359] (in reverse order)
[2025-11-23 21:24:36] 2025-11-23 19:58:46,091 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:24:36] 2025-11-23 19:58:46,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:24:36] 2025-11-23 19:58:46,105 | INFO     | did not find any defunct processes belonging to 725359
[2025-11-23 21:24:36] 2025-11-23 19:58:46,119 | INFO     | did not find any defunct processes belonging to 725359
[2025-11-23 21:24:36] 2025-11-23 19:58:46,121 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:24:36] 2025-11-23 19:58:46,121 | INFO     | ready for new job
[2025-11-23 21:24:36] 2025-11-23 19:58:46,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:24:36] 2025-11-23 19:58:46,128 | INFO     | ***************************************
[2025-11-23 21:24:36] 2025-11-23 19:58:46,128 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:24:36] 2025-11-23 19:58:46,128 | INFO     | ***************************************
[2025-11-23 21:24:36] 2025-11-23 19:58:46,129 | INFO     | 
[2025-11-23 21:24:36] 2025-11-23 19:58:46,135 | INFO     | architecture information:
[2025-11-23 21:24:36] 2025-11-23 19:58:46,136 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:24:36] 2025-11-23 19:58:46,151 | INFO     | cat /etc/os-release:
[2025-11-23 21:24:36] NAME="CentOS Linux"
[2025-11-23 21:24:36] VERSION="7 (Core)"
[2025-11-23 21:24:36] ID="centos"
[2025-11-23 21:24:36] ID_LIKE="rhel fedora"
[2025-11-23 21:24:36] VERSION_ID="7"
[2025-11-23 21:24:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:24:36] ANSI_COLOR="0;31"
[2025-11-23 21:24:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:24:36] HOME_URL="https://www.centos.org/"
[2025-11-23 21:24:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:24:36] 
[2025-11-23 21:24:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:24:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:24:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:24:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:24:36] 
[2025-11-23 21:24:36] 2025-11-23 19:58:46,151 | INFO     | ***************************************
[2025-11-23 21:24:36] 2025-11-23 19:58:46,654 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-23 21:24:36] 2025-11-23 19:58:46,673 | INFO     | sufficient remaining disk space (680291991552 B)
[2025-11-23 21:24:36] 2025-11-23 19:58:46,673 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:24:36] 2025-11-23 19:58:46,673 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:24:36] 2025-11-23 19:58:46,674 | INFO     | update_server=False
[2025-11-23 21:24:36] 2025-11-23 19:58:46,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:24:36] 2025-11-23 19:58:46,674 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:24:36] 2025-11-23 19:58:46,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:24:36] 2025-11-23 19:58:46,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:24:36] 2025-11-23 19:58:46,675 | INFO     | aborting loop
[2025-11-23 21:24:36] 2025-11-23 19:58:46,696 | INFO     | all data control threads have been joined
[2025-11-23 21:24:36] 2025-11-23 19:58:46,847 | INFO     | all job control threads have been joined
[2025-11-23 21:24:36] 2025-11-23 19:58:46,918 | INFO     | all payload control threads have been joined
[2025-11-23 21:24:36] 2025-11-23 19:58:47,679 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:47,681 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:47,701 | INFO     | [data] control thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:47,853 | INFO     | [job] control thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:47,921 | INFO     | [payload] control thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,108 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,305 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,370 | INFO     | [job] validate thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,665 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,668 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,680 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:48,925 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:49,003 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:49,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:24:36] 2025-11-23 19:58:50,623 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:58:50,681 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:24:36] 2025-11-23 19:59:16,686 | INFO     | PID=718386 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 21:24:36] 2025-11-23 19:59:16,686 | INFO     | .. there are 5 such processes running
[2025-11-23 21:24:36] 2025-11-23 19:59:16,687 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:24:36] 2025-11-23 19:59:16,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:24:36] 2025-11-23 19:59:16,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:24:36] 2025-11-23 19:59:30,599 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:24:36] 2025-11-23 19:59:31,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23364977231680)>', '<ExcThread(monitor, started 23364739499776)>']
[2025-11-23 21:24:36] 2025-11-23 19:59:31,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:24:36] 2025-11-23 19:59:31,753 | INFO     | [monitor] control thread has ended
[2025-11-23 21:24:36] 2025-11-23 19:59:36,375 | INFO     | all workflow threads have been joined
[2025-11-23 21:24:36] 2025-11-23 19:59:36,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:24:36] 2025-11-23 19:59:36,375 | INFO     | traces error code: 0
[2025-11-23 21:24:36] 2025-11-23 19:59:36,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:24:36] 2025-11-23 19:59:36,581 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:24:36] 2025-11-23 19:59:36,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:24:36] 2025-11-23 19:59:36,588 [wrapper] pilotpid: 718386
[2025-11-23 21:24:36] 2025-11-23 19:59:36,591 [wrapper] Pilot exit status: 0
[2025-11-23 21:24:36] 2025-11-23 19:59:36,601 [wrapper] pandaids: 6893874631
[2025-11-23 21:24:36] 2025-11-23 19:59:36,676 [wrapper] cleanup supervisor_pilot 1579231 718387
[2025-11-23 21:24:36] 2025-11-23 19:59:36,680 [wrapper] Test setup, not cleaning
[2025-11-23 21:24:36] 2025-11-23 19:59:36,683 [wrapper] apfmon messages muted
[2025-11-23 21:24:36] 2025-11-23 19:59:36,686 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:24:36] 2025-11-23 19:59:36,688 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:24:36]  *** Error codes and diagnostics ***
[2025-11-23 21:24:36]     "exeErrorCode": 0,
[2025-11-23 21:24:36]     "exeErrorDiag": "",
[2025-11-23 21:24:36]     "pilotErrorCode": 0,
[2025-11-23 21:24:36]     "pilotErrorDiag": "",
[2025-11-23 21:24:36]  *** Listing of results directory ***
[2025-11-23 21:24:36] total 1316424
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc    576529 Nov 20 17:08 pilot3.tar.gz
[2025-11-23 21:24:36] -rwx------ 1 boinc boinc     36292 Nov 20 17:16 runpilot2-wrapper.sh
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc      5112 Nov 20 17:16 queuedata.json
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc       100 Nov 23 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:24:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 04:25 run_atlas
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc       105 Nov 23 04:25 job.xml
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc      6636 Nov 23 04:25 init_data.xml
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc 408976712 Nov 23 04:25 EVNT.47493127._000729.pool.root.1
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc     15847 Nov 23 04:25 start_atlas.sh
[2025-11-23 21:24:36] drwxrwx--x 2 boinc boinc      4096 Nov 23 04:25 shared
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc    590097 Nov 23 04:25 input.tar.gz
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc         0 Nov 23 04:25 boinc_lockfile
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc      2785 Nov 23 04:25 pandaJob.out
[2025-11-23 21:24:36] -rw------- 1 boinc boinc    989784 Nov 23 04:25 agis_schedconf.cvmfs.json
[2025-11-23 21:24:36] drwx------ 5 boinc boinc      4096 Nov 23 04:25 pilot3
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc       532 Nov 23 20:50 boinc_task_state.xml
[2025-11-23 21:24:36] -rw------- 1 boinc boinc 914984778 Nov 23 20:57 HITS.47523449._007284.pool.root.1
[2025-11-23 21:24:36] -rw------- 1 boinc boinc      1044 Nov 23 20:58 memory_monitor_summary.json
[2025-11-23 21:24:36] -rw------- 1 boinc boinc   1526164 Nov 23 20:58 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:24:36] -rw------- 1 boinc boinc   1720660 Nov 23 20:58 log.47523449._007284.job.log.tgz.1
[2025-11-23 21:24:36] -rw------- 1 boinc boinc      8628 Nov 23 20:58 heartbeat.json
[2025-11-23 21:24:36] -rw------- 1 boinc boinc        95 Nov 23 20:59 pilot_heartbeat.json
[2025-11-23 21:24:36] -rw------- 1 boinc boinc      4832 Nov 23 20:59 pilotlog.txt
[2025-11-23 21:24:36] -rw------- 1 boinc boinc   8346705 Nov 23 20:59 log.47523449._007284.job.log.1
[2025-11-23 21:24:36] -rw------- 1 boinc boinc       353 Nov 23 20:59 output.list
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc       620 Nov 23 20:59 runtime_log
[2025-11-23 21:24:36] -rw------- 1 boinc boinc  10086400 Nov 23 20:59 result.tar.gz
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc      9206 Nov 23 20:59 runtime_log.err
[2025-11-23 21:24:36] -rw------- 1 boinc boinc       670 Nov 23 20:59 8c6NDmmVMg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEIIKDmCwsSNo.diag
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc        28 Nov 23 21:24 wrapper_checkpoint.txt
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc      8192 Nov 23 21:24 boinc_mmap_file
[2025-11-23 21:24:36] -rw-r--r-- 1 boinc boinc     21101 Nov 23 21:24 stderr.txt
[2025-11-23 21:24:36] HITS file was successfully produced:
[2025-11-23 21:24:36] -rw------- 1 boinc boinc 914984778 Nov 23 20:57 shared/HITS.pool.root.1
[2025-11-23 21:24:36]  *** Contents of shared directory: ***
[2025-11-23 21:24:36] total 1303388
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc 408976712 Nov 23 04:25 ATLAS.root_0
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc     15847 Nov 23 04:25 start_atlas.sh
[2025-11-23 21:24:36] -rw-r--r-- 2 boinc boinc    590097 Nov 23 04:25 input.tar.gz
[2025-11-23 21:24:36] -rw------- 1 boinc boinc 914984778 Nov 23 20:57 HITS.pool.root.1
[2025-11-23 21:24:36] -rw------- 1 boinc boinc  10086400 Nov 23 20:59 result.tar.gz
21:24:37 (712494): run_atlas exited; CPU time 237933.059638
21:24:37 (712494): called boinc_finish(0)

</stderr_txt>
]]>

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