Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:01:40 (1543679): wrapper (7.7.26015): starting
16:01:40 (1543679): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 16:01:40] Arguments: --nthreads 4
[2025-11-25 16:01:40] Threads: 4
[2025-11-25 16:01:40] Checking for CVMFS
[2025-11-25 16:01:40] No cvmfs_config command found, will try listing directly
[2025-11-25 16:01:40] CVMFS is ok
[2025-11-25 16:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:01:40] Further information can be found at the LHC@home message board.
[2025-11-25 16:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:01:40] Checking for apptainer binary...
[2025-11-25 16:01:40] which: no apptainer in ((null))
[2025-11-25 16:01:40] apptainer is not installed, using version from CVMFS
[2025-11-25 16:01:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:01:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-11-25 16:01:40] apptainer works
[2025-11-25 16:01:40] Set ATHENA_PROC_NUMBER=4
[2025-11-25 16:01:40] Set ATHENA_CORE_NUMBER=4
[2025-11-25 16:01:40] Starting ATLAS job with PandaID=6893858269
[2025-11-25 16:01:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:52:56]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:52:56] 2025-11-26 06:36:49,333 | INFO     | monitor loop #3787: job 0:6893858269 is in state 'finished'
[2025-11-26 07:52:56] 2025-11-26 06:36:49,333 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:52:56] 2025-11-26 06:36:49,430 | INFO     | time since job start (56094s) is within the limit (172800.0s)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,485 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:52:56] 2025-11-26 06:36:50,507 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2693.027109374998
[2025-11-26 07:52:56] 2025-11-26 06:36:50,532 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893858269/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,533 | INFO     | extracted standard info from prmon json
[2025-11-26 07:52:56] 2025-11-26 06:36:50,533 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:52:56] 2025-11-26 06:36:50,533 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:52:56] 2025-11-26 06:36:50,549 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:52:56] 2025-11-26 06:36:50,550 | INFO     | sum of square deviations: 240671377620.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,569 | INFO     | sum of deviations: 665409649388.0004
[2025-11-26 07:52:56] 2025-11-26 06:36:50,569 | INFO     | mean x: 1764110949.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,569 | INFO     | mean y: 2267124.0435255715
[2025-11-26 07:52:56] 2025-11-26 06:36:50,569 | INFO     | intersect: -4875157269.600175
[2025-11-26 07:52:56] 2025-11-26 06:36:50,570 | INFO     | chi2: 4.509555863885765
[2025-11-26 07:52:56] 2025-11-26 06:36:50,571 | INFO     | sum of square deviations: 236764448552.5
[2025-11-26 07:52:56] 2025-11-26 06:36:50,591 | INFO     | sum of deviations: 865792674573.9999
[2025-11-26 07:52:56] 2025-11-26 06:36:50,591 | INFO     | mean x: 1764110796.5
[2025-11-26 07:52:56] 2025-11-26 06:36:50,591 | INFO     | mean y: 2274941.7352297595
[2025-11-26 07:52:56] 2025-11-26 06:36:50,591 | INFO     | intersect: -6448669083.367972
[2025-11-26 07:52:56] 2025-11-26 06:36:50,592 | INFO     | chi2: 2.0817254324551535
[2025-11-26 07:52:56] 2025-11-26 06:36:50,592 | INFO     | current chi2=2.0817254324551535 (change=53.837462151729824 %)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,593 | INFO     | sum of square deviations: 232900031910.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,610 | INFO     | sum of deviations: 866039372054.9999
[2025-11-26 07:52:56] 2025-11-26 06:36:50,611 | INFO     | mean x: 1764110644.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,611 | INFO     | mean y: 2274950.1485148515
[2025-11-26 07:52:56] 2025-11-26 06:36:50,611 | INFO     | intersect: -6557575050.025328
[2025-11-26 07:52:56] 2025-11-26 06:36:50,612 | INFO     | chi2: 2.0663613293938874
[2025-11-26 07:52:56] 2025-11-26 06:36:50,612 | INFO     | current chi2=2.0663613293938874 (change=0.7380465656869044 %)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,612 | INFO     | right removable region: 908
[2025-11-26 07:52:56] 2025-11-26 06:36:50,613 | INFO     | sum of square deviations: 236764448552.5
[2025-11-26 07:52:56] 2025-11-26 06:36:50,633 | INFO     | sum of deviations: 491905790197.4998
[2025-11-26 07:52:56] 2025-11-26 06:36:50,633 | INFO     | mean x: 1764111101.5
[2025-11-26 07:52:56] 2025-11-26 06:36:50,633 | INFO     | mean y: 2273884.535010941
[2025-11-26 07:52:56] 2025-11-26 06:36:50,633 | INFO     | intersect: -3662872934.1062136
[2025-11-26 07:52:56] 2025-11-26 06:36:50,634 | INFO     | chi2: 2.5711929969598786
[2025-11-26 07:52:56] 2025-11-26 06:36:50,634 | INFO     | current chi2=2.5711929969598786 (change=42.983453923900406 %)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,635 | INFO     | sum of square deviations: 232900031910.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,654 | INFO     | sum of deviations: 464360431733.999
[2025-11-26 07:52:56] 2025-11-26 06:36:50,654 | INFO     | mean x: 1764111254.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,654 | INFO     | mean y: 2274971.579757976
[2025-11-26 07:52:56] 2025-11-26 06:36:50,654 | INFO     | intersect: -3515042981.6045723
[2025-11-26 07:52:56] 2025-11-26 06:36:50,655 | INFO     | chi2: 2.5537512036127965
[2025-11-26 07:52:56] 2025-11-26 06:36:50,655 | INFO     | current chi2=2.5537512036127965 (change=0.6783541090732923 %)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,655 | INFO     | left removable region: 20
[2025-11-26 07:52:56] 2025-11-26 06:36:50,656 | INFO     | sum of square deviations: 217128469222.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,673 | INFO     | sum of deviations: 614478734680.0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,674 | INFO     | mean x: 1764111223.5
[2025-11-26 07:52:56] 2025-11-26 06:36:50,674 | INFO     | mean y: 2284914.903153153
[2025-11-26 07:52:56] 2025-11-26 06:36:50,674 | INFO     | intersect: -4990191826.333099
[2025-11-26 07:52:56] 2025-11-26 06:36:50,675 | INFO     | chi2: 0.07575963185130329
[2025-11-26 07:52:56] 2025-11-26 06:36:50,675 | INFO     | current memory leak: 2.83 B/s (using 888 data points, chi2=0.08)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | could have reported an average CPU frequency of 2682 MHz (34 samples)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | ..............................
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . Timing measurements:
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . get job = 0 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . initial setup = 1 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . payload setup = 9 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . stage-in = 0 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . payload execution = 56050 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . stage-out = 2 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,677 | INFO     | . log creation = 0 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,678 | INFO     | ..............................
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | 
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | job summary report
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | --------------------------------------------------
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | PanDA job id: 6893858269
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | task id: 47523449
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | errors: (none)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | pilot state: finished 
[2025-11-26 07:52:56] 2025-11-26 06:36:50,772 | INFO     | transexitcode: 0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | exeerrorcode: 0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | exeerrordiag: 
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | exitcode: 0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | exitmsg: OK
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | cpuconsumptiontime: 222405 s
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | nevents: 1000
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | neventsw: 0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | pid: 1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | pgrp: 1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | corecount: 4
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | event service: False
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | sizes: {0: 2284100, 1: 2284355, 8: 2284617, 12: 2284645, 56063: 2336373, 56066: 2345391, 56069: 2345603, 56078: 2345849}
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | --------------------------------------------------
[2025-11-26 07:52:56] 2025-11-26 06:36:50,773 | INFO     | 
[2025-11-26 07:52:56] 2025-11-26 06:36:50,774 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-26 07:52:56] 2025-11-26 06:36:50,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | job 6893858269 has completed (purged errors)
[2025-11-26 07:52:56] 2025-11-26 06:36:50,807 | INFO     | overall cleanup function is called
[2025-11-26 07:52:56] 2025-11-26 06:36:51,824 | INFO     | --- collectZombieJob: --- 10, [1555138]
[2025-11-26 07:52:56] 2025-11-26 06:36:51,825 | INFO     | zombie collector waiting for pid 1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:51,825 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:52:56] 2025-11-26 06:36:51,825 | INFO     | collected zombie processes
[2025-11-26 07:52:56] 2025-11-26 06:36:51,825 | INFO     | will attempt to kill all subprocesses of pid=1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:52,632 | INFO     | process IDs to be killed: [1555138] (in reverse order)
[2025-11-26 07:52:56] 2025-11-26 06:36:52,883 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:52:56] 2025-11-26 06:36:52,884 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:52:56] 2025-11-26 06:36:52,914 | INFO     | did not find any defunct processes belonging to 1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:52,942 | INFO     | did not find any defunct processes belonging to 1555138
[2025-11-26 07:52:56] 2025-11-26 06:36:52,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:52:56] 2025-11-26 06:36:52,944 | INFO     | ready for new job
[2025-11-26 07:52:56] 2025-11-26 06:36:52,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:52:56] 2025-11-26 06:36:52,950 | INFO     | ***************************************
[2025-11-26 07:52:56] 2025-11-26 06:36:52,950 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:52:56] 2025-11-26 06:36:52,950 | INFO     | ***************************************
[2025-11-26 07:52:56] 2025-11-26 06:36:52,950 | INFO     | 
[2025-11-26 07:52:56] 2025-11-26 06:36:52,958 | INFO     | architecture information:
[2025-11-26 07:52:56] 2025-11-26 06:36:52,958 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:52:56] 2025-11-26 06:36:52,983 | INFO     | cat /etc/os-release:
[2025-11-26 07:52:56] NAME="CentOS Linux"
[2025-11-26 07:52:56] VERSION="7 (Core)"
[2025-11-26 07:52:56] ID="centos"
[2025-11-26 07:52:56] ID_LIKE="rhel fedora"
[2025-11-26 07:52:56] VERSION_ID="7"
[2025-11-26 07:52:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:52:56] ANSI_COLOR="0;31"
[2025-11-26 07:52:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:52:56] HOME_URL="https://www.centos.org/"
[2025-11-26 07:52:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:52:56] 
[2025-11-26 07:52:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:52:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:52:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:52:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:52:56] 
[2025-11-26 07:52:56] 2025-11-26 06:36:52,983 | INFO     | ***************************************
[2025-11-26 07:52:56] 2025-11-26 06:36:53,486 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-26 07:52:56] 2025-11-26 06:36:53,513 | INFO     | sufficient remaining disk space (3289617793024 B)
[2025-11-26 07:52:56] 2025-11-26 06:36:53,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:52:56] 2025-11-26 06:36:53,514 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:52:56] 2025-11-26 06:36:53,514 | INFO     | update_server=False
[2025-11-26 07:52:56] 2025-11-26 06:36:53,514 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:52:56] 2025-11-26 06:36:53,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:52:56] 2025-11-26 06:36:53,515 | INFO     | aborting loop
[2025-11-26 07:52:56] 2025-11-26 06:36:53,629 | INFO     | all data control threads have been joined
[2025-11-26 07:52:56] 2025-11-26 06:36:53,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:52:56] 2025-11-26 06:36:54,516 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:54,520 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:54,637 | INFO     | [data] control thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:54,644 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:54,839 | INFO     | all payload control threads have been joined
[2025-11-26 07:52:56] 2025-11-26 06:36:54,895 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:54,917 | INFO     | all job control threads have been joined
[2025-11-26 07:52:56] 2025-11-26 06:36:55,010 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,154 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,159 | INFO     | [job] validate thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,196 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,308 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,705 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,779 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:52:56] 2025-11-26 06:36:55,845 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,846 | INFO     | [payload] control thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:55,922 | INFO     | [job] control thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:36:56,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:52:56] 2025-11-26 06:36:56,787 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:37:00,442 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:52:56] 2025-11-26 06:37:23,438 | INFO     | PID=1547668 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 07:52:56] 2025-11-26 06:37:23,439 | INFO     | .. there are 6 such processes running
[2025-11-26 07:52:56] 2025-11-26 06:37:23,440 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:52:56] 2025-11-26 06:37:23,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:52:56] 2025-11-26 06:37:23,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:52:56] 2025-11-26 06:37:24,853 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:52:56] 2025-11-26 06:37:26,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22648225503040)>', '<ExcThread(monitor, started 22647987472128)>']
[2025-11-26 07:52:56] 2025-11-26 06:37:27,457 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:52:56] 2025-11-26 06:37:27,458 | INFO     | [monitor] control thread has ended
[2025-11-26 07:52:56] 2025-11-26 06:37:31,586 | INFO     | all workflow threads have been joined
[2025-11-26 07:52:56] 2025-11-26 06:37:31,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:52:56] 2025-11-26 06:37:31,586 | INFO     | traces error code: 0
[2025-11-26 07:52:56] 2025-11-26 06:37:31,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:52:56] 2025-11-26 06:37:31,722 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:52:56] 2025-11-26 06:37:31,726 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:52:56] 2025-11-26 06:37:31,729 [wrapper] pilotpid: 1547668
[2025-11-26 07:52:56] 2025-11-26 06:37:31,734 [wrapper] Pilot exit status: 0
[2025-11-26 07:52:56] 2025-11-26 06:37:31,749 [wrapper] pandaids: 6893858269
[2025-11-26 07:52:56] 2025-11-26 06:37:31,926 [wrapper] cleanup supervisor_pilot 2787973 1547669
[2025-11-26 07:52:56] 2025-11-26 06:37:31,930 [wrapper] Test setup, not cleaning
[2025-11-26 07:52:56] 2025-11-26 06:37:31,934 [wrapper] apfmon messages muted
[2025-11-26 07:52:56] 2025-11-26 06:37:31,938 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:52:56] 2025-11-26 06:37:31,943 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:52:56]  *** Error codes and diagnostics ***
[2025-11-26 07:52:56]     "exeErrorCode": 0,
[2025-11-26 07:52:56]     "exeErrorDiag": "",
[2025-11-26 07:52:56]     "pilotErrorCode": 0,
[2025-11-26 07:52:56]     "pilotErrorDiag": "",
[2025-11-26 07:52:56]  *** Listing of results directory ***
[2025-11-26 07:52:56] total 1324732
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-26 07:52:56] -rwx------ 1 boinc boinc     36292 Nov 20 14:18 runpilot2-wrapper.sh
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:18 queuedata.json
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc       100 Nov 25 16:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:52:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 16:01 run_atlas
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc       105 Nov 25 16:01 job.xml
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc 412007760 Nov 25 16:01 EVNT.47493127._000509.pool.root.1
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc      6688 Nov 25 16:01 init_data.xml
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 16:01 start_atlas.sh
[2025-11-26 07:52:56] drwxrwx--x 2 boinc boinc      4096 Nov 25 16:01 shared
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc    590097 Nov 25 16:01 input.tar.gz
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 16:01 boinc_lockfile
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc      2786 Nov 25 16:01 pandaJob.out
[2025-11-26 07:52:56] -rw------- 1 boinc boinc    991909 Nov 25 16:01 agis_schedconf.cvmfs.json
[2025-11-26 07:52:56] drwx------ 5 boinc boinc      4096 Nov 25 16:01 pilot3
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc       532 Nov 26 07:29 boinc_task_state.xml
[2025-11-26 07:52:56] -rw------- 1 boinc boinc 921780216 Nov 26 07:35 HITS.47523449._005088.pool.root.1
[2025-11-26 07:52:56] -rw------- 1 boinc boinc      1040 Nov 26 07:36 memory_monitor_summary.json
[2025-11-26 07:52:56] -rw------- 1 boinc boinc   1516240 Nov 26 07:36 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:52:56] -rw------- 1 boinc boinc   1670123 Nov 26 07:36 log.47523449._005088.job.log.tgz.1
[2025-11-26 07:52:56] -rw------- 1 boinc boinc      7920 Nov 26 07:36 heartbeat.json
[2025-11-26 07:52:56] -rw------- 1 boinc boinc        95 Nov 26 07:37 pilot_heartbeat.json
[2025-11-26 07:52:56] -rw------- 1 boinc boinc      4835 Nov 26 07:37 pilotlog.txt
[2025-11-26 07:52:56] -rw------- 1 boinc boinc   7744713 Nov 26 07:37 log.47523449._005088.job.log.1
[2025-11-26 07:52:56] -rw------- 1 boinc boinc       353 Nov 26 07:37 output.list
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc       620 Nov 26 07:37 runtime_log
[2025-11-26 07:52:56] -rw------- 1 boinc boinc   9431040 Nov 26 07:37 result.tar.gz
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc      9223 Nov 26 07:37 runtime_log.err
[2025-11-26 07:52:56] -rw------- 1 boinc boinc       670 Nov 26 07:37 P6bLDmJjJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmduHKDmmSfHin.diag
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc      8192 Nov 26 07:52 boinc_mmap_file
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc        28 Nov 26 07:52 wrapper_checkpoint.txt
[2025-11-26 07:52:56] -rw-r--r-- 1 boinc boinc     21073 Nov 26 07:52 stderr.txt
[2025-11-26 07:52:56] HITS file was successfully produced:
[2025-11-26 07:52:56] -rw------- 1 boinc boinc 921780216 Nov 26 07:35 shared/HITS.pool.root.1
[2025-11-26 07:52:56]  *** Contents of shared directory: ***
[2025-11-26 07:52:56] total 1312344
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc 412007760 Nov 25 16:01 ATLAS.root_0
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 16:01 start_atlas.sh
[2025-11-26 07:52:56] -rw-r--r-- 2 boinc boinc    590097 Nov 25 16:01 input.tar.gz
[2025-11-26 07:52:56] -rw------- 1 boinc boinc 921780216 Nov 26 07:35 HITS.pool.root.1
[2025-11-26 07:52:56] -rw------- 1 boinc boinc   9431040 Nov 26 07:37 result.tar.gz
07:52:58 (1543679): run_atlas exited; CPU time 225317.345913
07:52:58 (1543679): called boinc_finish(0)

</stderr_txt>
]]>

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