Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:17:37 (3974691): wrapper (7.7.26015): starting
00:17:37 (3974691): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:17:37] Arguments: --nthreads 4
[2025-11-21 00:17:37] Threads: 4
[2025-11-21 00:17:37] Checking for CVMFS
[2025-11-21 00:17:37] No cvmfs_config command found, will try listing directly
[2025-11-21 00:17:37] CVMFS is ok
[2025-11-21 00:17:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:17:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:17:37] Further information can be found at the LHC@home message board.
[2025-11-21 00:17:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:17:37] Checking for apptainer binary...
[2025-11-21 00:17:37] which: no apptainer in ((null))
[2025-11-21 00:17:37] apptainer is not installed, using version from CVMFS
[2025-11-21 00:17:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:17:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2025-11-21 00:17:37] apptainer works
[2025-11-21 00:17:38] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:17:38] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:17:38] Starting ATLAS job with PandaID=6893842521
[2025-11-21 00:17:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:03:52]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:03:52] 2025-11-21 18:03:04,003 | INFO     | time since job start (67516s) is within the limit (172800.0s)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,348 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 19:03:52] 2025-11-21 18:03:05,357 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2676.40015625
[2025-11-21 19:03:52] 2025-11-21 18:03:05,370 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6893842521/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,370 | INFO     | extracted standard info from prmon json
[2025-11-21 19:03:52] 2025-11-21 18:03:05,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:03:52] 2025-11-21 18:03:05,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:03:52] 2025-11-21 18:03:05,389 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:03:52] 2025-11-21 18:03:05,391 | INFO     | sum of square deviations: 420652535155.9911
[2025-11-21 19:03:52] 2025-11-21 18:03:05,415 | INFO     | sum of deviations: 1158721127521.1777
[2025-11-21 19:03:52] 2025-11-21 18:03:05,415 | INFO     | mean x: 1763714429.2366757
[2025-11-21 19:03:52] 2025-11-21 18:03:05,415 | INFO     | mean y: 2284279.9611562784
[2025-11-21 19:03:52] 2025-11-21 18:03:05,415 | INFO     | intersect: -4856008494.412927
[2025-11-21 19:03:52] 2025-11-21 18:03:05,417 | INFO     | chi2: 4.988489899975576
[2025-11-21 19:03:52] 2025-11-21 18:03:05,418 | INFO     | sum of square deviations: 414978452863.20984
[2025-11-21 19:03:52] 2025-11-21 18:03:05,442 | INFO     | sum of deviations: 1449891038305.069
[2025-11-21 19:03:52] 2025-11-21 18:03:05,442 | INFO     | mean x: 1763714276.7377496
[2025-11-21 19:03:52] 2025-11-21 18:03:05,442 | INFO     | mean y: 2292106.2459165156
[2025-11-21 19:03:52] 2025-11-21 18:03:05,442 | INFO     | intersect: -6159939947.801724
[2025-11-21 19:03:52] 2025-11-21 18:03:05,444 | INFO     | chi2: 1.9326639991459464
[2025-11-21 19:03:52] 2025-11-21 18:03:05,444 | INFO     | current chi2=1.9326639991459464 (change=61.257534085507345 %)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,445 | INFO     | sum of square deviations: 409355627345.4257
[2025-11-21 19:03:52] 2025-11-21 18:03:05,469 | INFO     | sum of deviations: 1501144293422.8228
[2025-11-21 19:03:52] 2025-11-21 18:03:05,470 | INFO     | mean x: 1763714124.2388332
[2025-11-21 19:03:52] 2025-11-21 18:03:05,470 | INFO     | mean y: 2293494.924339107
[2025-11-21 19:03:52] 2025-11-21 18:03:05,470 | INFO     | intersect: -6465406509.590918
[2025-11-21 19:03:52] 2025-11-21 18:03:05,471 | INFO     | chi2: 1.7662679493244453
[2025-11-21 19:03:52] 2025-11-21 18:03:05,471 | INFO     | current chi2=1.7662679493244453 (change=8.609672964107178 %)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,471 | INFO     | right removable region: 1096
[2025-11-21 19:03:52] 2025-11-21 18:03:05,473 | INFO     | sum of square deviations: 414978293043.20996
[2025-11-21 19:03:52] 2025-11-21 18:03:05,497 | INFO     | sum of deviations: 961450493937.7864
[2025-11-21 19:03:52] 2025-11-21 18:03:05,497 | INFO     | mean x: 1763714581.7377496
[2025-11-21 19:03:52] 2025-11-21 18:03:05,497 | INFO     | mean y: 2289574.002722323
[2025-11-21 19:03:52] 2025-11-21 18:03:05,497 | INFO     | intersect: -4084006707.5246277
[2025-11-21 19:03:52] 2025-11-21 18:03:05,499 | INFO     | chi2: 3.2992140118437785
[2025-11-21 19:03:52] 2025-11-21 18:03:05,499 | INFO     | current chi2=3.2992140118437785 (change=33.86347215296694 %)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,500 | INFO     | sum of square deviations: 409355307705.42584
[2025-11-21 19:03:52] 2025-11-21 18:03:05,524 | INFO     | sum of deviations: 928853988654.8589
[2025-11-21 19:03:52] 2025-11-21 18:03:05,525 | INFO     | mean x: 1763714734.2388332
[2025-11-21 19:03:52] 2025-11-21 18:03:05,525 | INFO     | mean y: 2290457.702825889
[2025-11-21 19:03:52] 2025-11-21 18:03:05,525 | INFO     | intersect: -3999693723.0567546
[2025-11-21 19:03:52] 2025-11-21 18:03:05,526 | INFO     | chi2: 3.287287025609289
[2025-11-21 19:03:52] 2025-11-21 18:03:05,526 | INFO     | current chi2=3.287287025609289 (change=0.36150992908229285 %)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,526 | INFO     | left removable region: 20
[2025-11-21 19:03:52] 2025-11-21 18:03:05,528 | INFO     | sum of square deviations: 386293530705.6906
[2025-11-21 19:03:52] 2025-11-21 18:03:05,551 | INFO     | sum of deviations: 1227205808126.2896
[2025-11-21 19:03:52] 2025-11-21 18:03:05,551 | INFO     | mean x: 1763714703.7425652
[2025-11-21 19:03:52] 2025-11-21 18:03:05,551 | INFO     | mean y: 2300826.286245353
[2025-11-21 19:03:52] 2025-11-21 18:03:05,552 | INFO     | intersect: -5600798258.382762
[2025-11-21 19:03:52] 2025-11-21 18:03:05,553 | INFO     | chi2: 0.05081034325389355
[2025-11-21 19:03:52] 2025-11-21 18:03:05,553 | INFO     | current memory leak: 3.18 B/s (using 1076 data points, chi2=0.05)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,554 | INFO     | could have reported an average CPU frequency of 2673 MHz (40 samples)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | ..............................
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . Timing measurements:
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . get job = 0 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . initial setup = 1 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . payload setup = 6 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . stage-in = 0 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . payload execution = 67479 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . stage-out = 2 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | . log creation = 0 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,555 | INFO     | ..............................
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | 
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | job summary report
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | --------------------------------------------------
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | PanDA job id: 6893842521
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | task id: 47523449
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | errors: (none)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,957 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | pilot state: finished 
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | transexitcode: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | exeerrorcode: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | exeerrordiag: 
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | exitcode: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | exitmsg: OK
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | cpuconsumptiontime: 254941 s
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | nevents: 1000
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | neventsw: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | pid: 3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | pgrp: 3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | corecount: 4
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | event service: False
[2025-11-21 19:03:52] 2025-11-21 18:03:05,958 | INFO     | sizes: {0: 2298647, 1: 2298846, 5: 2299108, 11: 2299164, 67489: 2357701, 67492: 2366717, 67493: 2366901, 67501: 2367147}
[2025-11-21 19:03:52] 2025-11-21 18:03:05,959 | INFO     | --------------------------------------------------
[2025-11-21 19:03:52] 2025-11-21 18:03:05,959 | INFO     | 
[2025-11-21 19:03:52] 2025-11-21 18:03:05,959 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-21 19:03:52] 2025-11-21 18:03:05,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:03:52] 2025-11-21 18:03:05,981 | INFO     | job 6893842521 has completed (purged errors)
[2025-11-21 19:03:52] 2025-11-21 18:03:05,982 | INFO     | overall cleanup function is called
[2025-11-21 19:03:52] 2025-11-21 18:03:06,992 | INFO     | --- collectZombieJob: --- 10, [3985428]
[2025-11-21 19:03:52] 2025-11-21 18:03:06,992 | INFO     | zombie collector waiting for pid 3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:06,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:03:52] 2025-11-21 18:03:06,992 | INFO     | collected zombie processes
[2025-11-21 19:03:52] 2025-11-21 18:03:06,992 | INFO     | will attempt to kill all subprocesses of pid=3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:07,402 | INFO     | process IDs to be killed: [3985428] (in reverse order)
[2025-11-21 19:03:52] 2025-11-21 18:03:07,522 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:03:52] 2025-11-21 18:03:07,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:03:52] 2025-11-21 18:03:07,537 | INFO     | did not find any defunct processes belonging to 3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:07,550 | INFO     | did not find any defunct processes belonging to 3985428
[2025-11-21 19:03:52] 2025-11-21 18:03:07,552 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:03:52] 2025-11-21 18:03:07,552 | INFO     | ready for new job
[2025-11-21 19:03:52] 2025-11-21 18:03:07,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:03:52] 2025-11-21 18:03:07,558 | INFO     | ***************************************
[2025-11-21 19:03:52] 2025-11-21 18:03:07,558 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:03:52] 2025-11-21 18:03:07,558 | INFO     | ***************************************
[2025-11-21 19:03:52] 2025-11-21 18:03:07,558 | INFO     | 
[2025-11-21 19:03:52] 2025-11-21 18:03:07,562 | INFO     | architecture information:
[2025-11-21 19:03:52] 2025-11-21 18:03:07,563 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:03:52] 2025-11-21 18:03:07,579 | INFO     | cat /etc/os-release:
[2025-11-21 19:03:52] NAME="CentOS Linux"
[2025-11-21 19:03:52] VERSION="7 (Core)"
[2025-11-21 19:03:52] ID="centos"
[2025-11-21 19:03:52] ID_LIKE="rhel fedora"
[2025-11-21 19:03:52] VERSION_ID="7"
[2025-11-21 19:03:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:03:52] ANSI_COLOR="0;31"
[2025-11-21 19:03:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:03:52] HOME_URL="https://www.centos.org/"
[2025-11-21 19:03:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:03:52] 
[2025-11-21 19:03:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:03:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:03:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:03:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:03:52] 
[2025-11-21 19:03:52] 2025-11-21 18:03:07,580 | INFO     | ***************************************
[2025-11-21 19:03:52] 2025-11-21 18:03:08,082 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-21 19:03:52] 2025-11-21 18:03:08,101 | INFO     | sufficient remaining disk space (670911430656 B)
[2025-11-21 19:03:52] 2025-11-21 18:03:08,102 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:03:52] 2025-11-21 18:03:08,102 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:03:52] 2025-11-21 18:03:08,102 | INFO     | update_server=False
[2025-11-21 19:03:52] 2025-11-21 18:03:08,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:03:52] 2025-11-21 18:03:08,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:03:52] 2025-11-21 18:03:08,164 | INFO     | all job control threads have been joined
[2025-11-21 19:03:52] 2025-11-21 18:03:08,449 | INFO     | all data control threads have been joined
[2025-11-21 19:03:52] 2025-11-21 18:03:08,539 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 19:03:52] 2025-11-21 18:03:08,539 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 19:03:52] 2025-11-21 18:03:08,539 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:03:52] 2025-11-21 18:03:08,539 | INFO     | will abort loop
[2025-11-21 19:03:52] 2025-11-21 18:03:08,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:03:52] 2025-11-21 18:03:09,107 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,169 | INFO     | [job] control thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,455 | INFO     | [data] control thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,484 | INFO     | all payload control threads have been joined
[2025-11-21 19:03:52] 2025-11-21 18:03:09,544 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,578 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,782 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,950 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:09,995 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,107 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,199 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,470 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,489 | INFO     | [job] validate thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,489 | INFO     | [payload] control thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,525 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:10,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:03:52] 2025-11-21 18:03:11,669 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:12,789 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:03:52] 2025-11-21 18:03:37,604 | INFO     | PID=3978470 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:03:52] 2025-11-21 18:03:37,604 | INFO     | .. there are 5 such processes running
[2025-11-21 19:03:52] 2025-11-21 18:03:37,605 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:03:52] 2025-11-21 18:03:37,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:03:52] 2025-11-21 18:03:37,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:03:52] 2025-11-21 18:03:43,197 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:03:52] 2025-11-21 18:03:43,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22839726602048)>', '<ExcThread(monitor, started 22839279191808)>']
[2025-11-21 19:03:52] 2025-11-21 18:03:44,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:03:52] 2025-11-21 18:03:44,641 | INFO     | [monitor] control thread has ended
[2025-11-21 19:03:52] 2025-11-21 18:03:48,744 | INFO     | all workflow threads have been joined
[2025-11-21 19:03:52] 2025-11-21 18:03:48,744 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:03:52] 2025-11-21 18:03:48,745 | INFO     | traces error code: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:48,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:03:52] 2025-11-21 18:03:48,896 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:03:52] 2025-11-21 18:03:48,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:03:52] 2025-11-21 18:03:48,902 [wrapper] pilotpid: 3978470
[2025-11-21 19:03:52] 2025-11-21 18:03:48,905 [wrapper] Pilot exit status: 0
[2025-11-21 19:03:52] 2025-11-21 18:03:48,916 [wrapper] pandaids: 6893842521
[2025-11-21 19:03:52] 2025-11-21 18:03:48,999 [wrapper] cleanup supervisor_pilot  920129 3978471
[2025-11-21 19:03:52] 2025-11-21 18:03:49,002 [wrapper] Test setup, not cleaning
[2025-11-21 19:03:52] 2025-11-21 18:03:49,005 [wrapper] apfmon messages muted
[2025-11-21 19:03:52] 2025-11-21 18:03:49,008 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:03:52] 2025-11-21 18:03:49,010 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:03:52]  *** Error codes and diagnostics ***
[2025-11-21 19:03:52]     "exeErrorCode": 0,
[2025-11-21 19:03:52]     "exeErrorDiag": "",
[2025-11-21 19:03:52]     "pilotErrorCode": 0,
[2025-11-21 19:03:52]     "pilotErrorDiag": "",
[2025-11-21 19:03:52]  *** Listing of results directory ***
[2025-11-21 19:03:52] total 1312072
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-21 19:03:52] -rwx------ 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:03:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:42 run_atlas
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:42 job.xml
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc 408869196 Nov 21 00:17 EVNT.47493127._000196.pool.root.1
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc      6633 Nov 21 00:17 init_data.xml
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:17 start_atlas.sh
[2025-11-21 19:03:52] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:17 shared
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc    590105 Nov 21 00:17 input.tar.gz
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:17 boinc_lockfile
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc      2786 Nov 21 00:17 pandaJob.out
[2025-11-21 19:03:52] -rw------- 1 boinc boinc    989817 Nov 21 00:17 agis_schedconf.cvmfs.json
[2025-11-21 19:03:52] drwx------ 5 boinc boinc      4096 Nov 21 00:17 pilot3
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc       531 Nov 21 18:53 boinc_task_state.xml
[2025-11-21 19:03:52] -rw------- 1 boinc boinc 908461672 Nov 21 19:02 HITS.47523449._001957.pool.root.1
[2025-11-21 19:03:52] -rw------- 1 boinc boinc      1044 Nov 21 19:02 memory_monitor_summary.json
[2025-11-21 19:03:52] -rw------- 1 boinc boinc   1526164 Nov 21 19:02 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:03:52] -rw------- 1 boinc boinc   1812803 Nov 21 19:02 log.47523449._001957.job.log.tgz.1
[2025-11-21 19:03:52] -rw------- 1 boinc boinc      8631 Nov 21 19:03 heartbeat.json
[2025-11-21 19:03:52] -rw------- 1 boinc boinc        95 Nov 21 19:03 pilot_heartbeat.json
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc        28 Nov 21 19:03 wrapper_checkpoint.txt
[2025-11-21 19:03:52] -rw------- 1 boinc boinc      5019 Nov 21 19:03 pilotlog.txt
[2025-11-21 19:03:52] -rw------- 1 boinc boinc   9341358 Nov 21 19:03 log.47523449._001957.job.log.1
[2025-11-21 19:03:52] -rw------- 1 boinc boinc       353 Nov 21 19:03 output.list
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc       620 Nov 21 19:03 runtime_log
[2025-11-21 19:03:52] -rw------- 1 boinc boinc  11171840 Nov 21 19:03 result.tar.gz
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc      9206 Nov 21 19:03 runtime_log.err
[2025-11-21 19:03:52] -rw------- 1 boinc boinc       670 Nov 21 19:03 7UuMDmqxGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1QGKDmP8soEo.diag
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc      8192 Nov 21 19:03 boinc_mmap_file
[2025-11-21 19:03:52] -rw-r--r-- 1 boinc boinc     21097 Nov 21 19:03 stderr.txt
[2025-11-21 19:03:52] HITS file was successfully produced:
[2025-11-21 19:03:52] -rw------- 1 boinc boinc 908461672 Nov 21 19:02 shared/HITS.pool.root.1
[2025-11-21 19:03:52]  *** Contents of shared directory: ***
[2025-11-21 19:03:52] total 1297976
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc 408869196 Nov 21 00:17 ATLAS.root_0
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:17 start_atlas.sh
[2025-11-21 19:03:52] -rw-r--r-- 2 boinc boinc    590105 Nov 21 00:17 input.tar.gz
[2025-11-21 19:03:52] -rw------- 1 boinc boinc 908461672 Nov 21 19:02 HITS.pool.root.1
[2025-11-21 19:03:52] -rw------- 1 boinc boinc  11171840 Nov 21 19:03 result.tar.gz
19:03:54 (3974691): run_atlas exited; CPU time 257469.400455
19:03:54 (3974691): called boinc_finish(0)

</stderr_txt>
]]>

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