Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:51:32 (25410): wrapper (7.7.26015): starting
21:51:32 (25410): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:51:32] Arguments: --nthreads 8
[2025-11-23 21:51:32] Threads: 8
[2025-11-23 21:51:32] Checking for CVMFS
[2025-11-23 21:51:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:51:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:51:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:51:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:51:35] 2.11.2.0 570 281391 137460 153220 0 118 22688175 25165824 3952 130560 2 122820375 99.875 80408035 3084 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 21:51:35] CVMFS is ok
[2025-11-23 21:51:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:51:35] Checking for apptainer binary...
[2025-11-23 21:51:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:51:35] Running /usr/bin/apptainer --version
[2025-11-23 21:51:35] apptainer version 1.3.2-1.el7
[2025-11-23 21:51:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:51:52] cg-vwn366.simple-grid.lan
[2025-11-23 21:51:52] apptainer works
[2025-11-23 21:51:52] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:51:52] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:51:52] Starting ATLAS job with PandaID=6893857896
[2025-11-23 21:51:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:36:20]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:36:20] 2025-11-24 21:35:15,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:36:20] 2025-11-24 21:35:16,701 | INFO     | time since job start (88781s) is within the limit (172800.0s)
[2025-11-24 22:36:20] 2025-11-24 21:35:18,053 | INFO     | monitor loop #5956: job 0:6893857896 is in state 'finished'
[2025-11-24 22:36:20] 2025-11-24 21:35:18,053 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:36:20] 2025-11-24 21:35:18,708 | INFO     | time since job start (88783s) is within the limit (172800.0s)
[2025-11-24 22:36:20] 2025-11-24 21:35:20,559 | INFO     | monitor loop #5957: job 0:6893857896 is in state 'finished'
[2025-11-24 22:36:20] 2025-11-24 21:35:20,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:36:20] 2025-11-24 21:35:20,724 | INFO     | time since job start (88785s) is within the limit (172800.0s)
[2025-11-24 22:36:20] 2025-11-24 21:35:21,957 | INFO     | PID=29259 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 22:36:20] 2025-11-24 21:35:21,957 | INFO     | .. there are 9 such processes running
[2025-11-24 22:36:20] 2025-11-24 21:35:22,959 | INFO     | time since job start (88787s) is within the limit (172800.0s)
[2025-11-24 22:36:20] 2025-11-24 21:35:23,064 | INFO     | monitor loop #5958: job 0:6893857896 is in state 'finished'
[2025-11-24 22:36:20] 2025-11-24 21:35:23,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:36:20] 2025-11-24 21:35:24,967 | INFO     | time since job start (88789s) is within the limit (172800.0s)
[2025-11-24 22:36:20] 2025-11-24 21:35:25,572 | INFO     | monitor loop #5959: job 0:6893857896 is in state 'finished'
[2025-11-24 22:36:20] 2025-11-24 21:35:25,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,129 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 22:36:20] 2025-11-24 21:35:26,130 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 22:36:20] 2025-11-24 21:35:26,132 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893857896/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,133 | INFO     | extracted standard info from prmon json
[2025-11-24 22:36:20] 2025-11-24 21:35:26,133 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 22:36:20] 2025-11-24 21:35:26,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 22:36:20] 2025-11-24 21:35:26,172 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:36:20] 2025-11-24 21:35:26,174 | INFO     | sum of square deviations: 937520788020.4365
[2025-11-24 22:36:20] 2025-11-24 21:35:26,245 | INFO     | sum of deviations: 4099055310767.329
[2025-11-24 22:36:20] 2025-11-24 21:35:26,246 | INFO     | mean x: 1763975912.691563
[2025-11-24 22:36:20] 2025-11-24 21:35:26,246 | INFO     | mean y: 2833028.9536652835
[2025-11-24 22:36:20] 2025-11-24 21:35:26,246 | INFO     | intersect: -7709673109.97835
[2025-11-24 22:36:20] 2025-11-24 21:35:26,248 | INFO     | chi2: 24.570499560961462
[2025-11-24 22:36:20] 2025-11-24 21:35:26,250 | INFO     | sum of square deviations: 927829531810.8148
[2025-11-24 22:36:20] 2025-11-24 21:35:26,311 | INFO     | sum of deviations: 4580757155382.814
[2025-11-24 22:36:20] 2025-11-24 21:35:26,311 | INFO     | mean x: 1763975760.1956975
[2025-11-24 22:36:20] 2025-11-24 21:35:26,311 | INFO     | mean y: 2840608.2276197085
[2025-11-24 22:36:20] 2025-11-24 21:35:26,312 | INFO     | intersect: -8706027032.219366
[2025-11-24 22:36:20] 2025-11-24 21:35:26,313 | INFO     | chi2: 21.33949552194317
[2025-11-24 22:36:20] 2025-11-24 21:35:26,313 | INFO     | current chi2=21.33949552194317 (change=13.14993222259035 %)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,314 | INFO     | right removable region: 1440
[2025-11-24 22:36:20] 2025-11-24 21:35:26,316 | INFO     | sum of square deviations: 927828480780.8126
[2025-11-24 22:36:20] 2025-11-24 21:35:26,397 | INFO     | sum of deviations: 3482252751801.859
[2025-11-24 22:36:20] 2025-11-24 21:35:26,398 | INFO     | mean x: 1763976065.1956975
[2025-11-24 22:36:20] 2025-11-24 21:35:26,398 | INFO     | mean y: 2842733.8160999306
[2025-11-24 22:36:20] 2025-11-24 21:35:26,398 | INFO     | intersect: -6617573252.952304
[2025-11-24 22:36:20] 2025-11-24 21:35:26,400 | INFO     | chi2: 19.590774111439174
[2025-11-24 22:36:20] 2025-11-24 21:35:26,400 | INFO     | current chi2=19.590774111439174 (change=20.267090773499223 %)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,400 | INFO     | left removable region: 10
[2025-11-24 22:36:20] 2025-11-24 21:35:26,402 | INFO     | sum of square deviations: 906742264925.4617
[2025-11-24 22:36:20] 2025-11-24 21:35:26,464 | INFO     | sum of deviations: 3556377429467.4536
[2025-11-24 22:36:20] 2025-11-24 21:35:26,464 | INFO     | mean x: 1763976034.704895
[2025-11-24 22:36:20] 2025-11-24 21:35:26,465 | INFO     | mean y: 2860650.4062937065
[2025-11-24 22:36:20] 2025-11-24 21:35:26,465 | INFO     | intersect: -6915714559.564408
[2025-11-24 22:36:20] 2025-11-24 21:35:26,466 | INFO     | chi2: 11.881387361395173
[2025-11-24 22:36:20] 2025-11-24 21:35:26,467 | INFO     | current memory leak: 3.92 B/s (using 1430 data points, chi2=11.88)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,468 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,468 | INFO     | ..............................
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . Timing measurements:
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . get job = 0 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . initial setup = 10 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . payload setup = 172 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . stage-in = 0 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . payload execution = 88332 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . stage-out = 5 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | . log creation = 2 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,469 | INFO     | ..............................
[2025-11-24 22:36:20] 2025-11-24 21:35:26,587 | INFO     | 
[2025-11-24 22:36:20] 2025-11-24 21:35:26,587 | INFO     | job summary report
[2025-11-24 22:36:20] 2025-11-24 21:35:26,587 | INFO     | --------------------------------------------------
[2025-11-24 22:36:20] 2025-11-24 21:35:26,587 | INFO     | PanDA job id: 6893857896
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | task id: 47523449
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | errors: (none)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | pilot state: finished 
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | transexitcode: 0
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | exeerrorcode: 0
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | exeerrordiag: 
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | exitcode: 0
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | exitmsg: OK
[2025-11-24 22:36:20] 2025-11-24 21:35:26,588 | INFO     | cpuconsumptiontime: 342006 s
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | nevents: 1000
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | neventsw: 0
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | pid: 3617
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | pgrp: 3617
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | corecount: 8
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | event service: False
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 67: 2299159, 77: 2299187, 88: 2299243, 90: 2299813, 99
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | --------------------------------------------------
[2025-11-24 22:36:20] 2025-11-24 21:35:26,589 | INFO     | 
[2025-11-24 22:36:20] 2025-11-24 21:35:26,590 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 22:36:20] 2025-11-24 21:35:26,948 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,949 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,950 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:36:20] 2025-11-24 21:35:26,951 | INFO     | job 6893857896 has completed (purged errors)
[2025-11-24 22:36:20] 2025-11-24 21:35:26,951 | INFO     | overall cleanup function is called
[2025-11-24 22:36:20] 2025-11-24 21:35:27,967 | INFO     | --- collectZombieJob: --- 10, [3617]
[2025-11-24 22:36:20] 2025-11-24 21:35:27,968 | INFO     | zombie collector waiting for pid 3617
[2025-11-24 22:36:20] 2025-11-24 21:35:27,968 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:36:20] 2025-11-24 21:35:27,968 | INFO     | collected zombie processes
[2025-11-24 22:36:20] 2025-11-24 21:35:27,968 | INFO     | will attempt to kill all subprocesses of pid=3617
[2025-11-24 22:36:20] 2025-11-24 21:35:28,069 | INFO     | process IDs to be killed: [3617] (in reverse order)
[2025-11-24 22:36:20] 2025-11-24 21:35:28,663 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:36:20] 2025-11-24 21:35:28,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:36:20] 2025-11-24 21:35:28,667 | INFO     | did not find any defunct processes belonging to 3617
[2025-11-24 22:36:20] 2025-11-24 21:35:28,670 | INFO     | did not find any defunct processes belonging to 3617
[2025-11-24 22:36:20] 2025-11-24 21:35:28,740 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:36:20] 2025-11-24 21:35:28,740 | INFO     | ready for new job
[2025-11-24 22:36:20] 2025-11-24 21:35:28,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:36:20] 2025-11-24 21:35:28,746 | INFO     | ***************************************
[2025-11-24 22:36:20] 2025-11-24 21:35:28,746 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:36:20] 2025-11-24 21:35:28,747 | INFO     | ***************************************
[2025-11-24 22:36:20] 2025-11-24 21:35:28,747 | INFO     | 
[2025-11-24 22:36:20] 2025-11-24 21:35:28,747 | INFO     | pilot is running in a VM
[2025-11-24 22:36:20] 2025-11-24 21:35:28,747 | INFO     | architecture information:
[2025-11-24 22:36:20] 2025-11-24 21:35:28,762 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:36:20] 2025-11-24 21:35:28,987 | INFO     | cat /etc/os-release:
[2025-11-24 22:36:20] NAME="CentOS Linux"
[2025-11-24 22:36:20] VERSION="7 (Core)"
[2025-11-24 22:36:20] ID="centos"
[2025-11-24 22:36:20] ID_LIKE="rhel fedora"
[2025-11-24 22:36:20] VERSION_ID="7"
[2025-11-24 22:36:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:36:20] ANSI_COLOR="0;31"
[2025-11-24 22:36:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:36:20] HOME_URL="https://www.centos.org/"
[2025-11-24 22:36:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:36:20] 
[2025-11-24 22:36:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:36:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:36:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:36:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:36:20] 
[2025-11-24 22:36:20] 2025-11-24 21:35:28,988 | INFO     | ***************************************
[2025-11-24 22:36:20] 2025-11-24 21:35:29,491 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 22:36:20] 2025-11-24 21:35:29,628 | INFO     | sufficient remaining disk space (494804140032 B)
[2025-11-24 22:36:20] 2025-11-24 21:35:29,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:36:20] 2025-11-24 21:35:29,629 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:36:20] 2025-11-24 21:35:29,629 | INFO     | update_server=False
[2025-11-24 22:36:20] 2025-11-24 21:35:29,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:36:20] 2025-11-24 21:35:29,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:36:20] 2025-11-24 21:35:29,634 | INFO     | aborting loop
[2025-11-24 22:36:20] 2025-11-24 21:35:29,643 | INFO     | all data control threads have been joined
[2025-11-24 22:36:20] 2025-11-24 21:35:29,790 | INFO     | all job control threads have been joined
[2025-11-24 22:36:20] 2025-11-24 21:35:29,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:36:20] 2025-11-24 21:35:30,528 | INFO     | all payload control threads have been joined
[2025-11-24 22:36:20] 2025-11-24 21:35:30,635 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:30,640 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:30,649 | INFO     | [data] control thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:30,797 | INFO     | [job] control thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:30,952 | INFO     | [job] validate thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:36:20] 2025-11-24 21:35:31,049 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,449 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,508 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,535 | INFO     | [payload] control thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:36:20] 2025-11-24 21:35:31,710 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,854 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,925 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:31,974 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:32,608 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:35,026 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:36:20] 2025-11-24 21:35:58,156 | INFO     | PID=29259 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 22:36:20] 2025-11-24 21:35:58,157 | INFO     | .. there are 9 such processes running
[2025-11-24 22:36:20] 2025-11-24 21:35:58,158 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:36:20] 2025-11-24 21:35:58,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:36:20] 2025-11-24 21:35:58,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:36:20] 2025-11-24 21:36:09,662 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:36:20] 2025-11-24 21:36:11,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139719133947712)>', '<ExcThread(monitor, started 139718540900096)>']
[2025-11-24 22:36:20] 2025-11-24 21:36:11,234 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:36:20] 2025-11-24 21:36:11,235 | INFO     | [monitor] control thread has ended
[2025-11-24 22:36:20] 2025-11-24 21:36:16,120 | INFO     | all workflow threads have been joined
[2025-11-24 22:36:20] 2025-11-24 21:36:16,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:36:20] 2025-11-24 21:36:16,120 | INFO     | traces error code: 0
[2025-11-24 22:36:20] 2025-11-24 21:36:16,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:36:20] 2025-11-24 21:36:16,437 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:36:20] 2025-11-24 21:36:16,541 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:36:20] 2025-11-24 21:36:16,666 [wrapper] pilotpid: 29259
[2025-11-24 22:36:20] 2025-11-24 21:36:16,738 [wrapper] Pilot exit status: 0
[2025-11-24 22:36:20] 2025-11-24 21:36:17,172 [wrapper] pandaids: 6893857896
[2025-11-24 22:36:20] 2025-11-24 21:36:18,065 [wrapper] cleanup supervisor_pilot 22253 29260
[2025-11-24 22:36:20] 2025-11-24 21:36:18,126 [wrapper] Test setup, not cleaning
[2025-11-24 22:36:20] 2025-11-24 21:36:18,202 [wrapper] apfmon messages muted
[2025-11-24 22:36:20] 2025-11-24 21:36:18,257 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:36:20] 2025-11-24 21:36:18,350 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:36:20]  *** Error codes and diagnostics ***
[2025-11-24 22:36:20]     "exeErrorCode": 0,
[2025-11-24 22:36:20]     "exeErrorDiag": "",
[2025-11-24 22:36:20]     "pilotErrorCode": 0,
[2025-11-24 22:36:20]     "pilotErrorDiag": "",
[2025-11-24 22:36:20]  *** Listing of results directory ***
[2025-11-24 22:36:20] total 1330632
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 22:36:20] -rwx------. 1 boinc boinc     36292 Nov 20 14:16 runpilot2-wrapper.sh
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc      5112 Nov 20 14:16 queuedata.json
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc       100 Nov 23 21:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:36:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 21:51 run_atlas
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc       105 Nov 23 21:51 job.xml
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc 410063261 Nov 23 21:51 EVNT.47493127._000503.pool.root.1
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc      6391 Nov 23 21:51 init_data.xml
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc     15847 Nov 23 21:51 start_atlas.sh
[2025-11-24 22:36:20] drwxrwx--x. 2 boinc boinc        68 Nov 23 21:51 shared
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc    590098 Nov 23 21:51 input.tar.gz
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc         0 Nov 23 21:51 boinc_lockfile
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc      2786 Nov 23 21:51 pandaJob.out
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc    989786 Nov 23 21:55 agis_schedconf.cvmfs.json
[2025-11-24 22:36:20] drwx------. 5 boinc boinc      4096 Nov 23 21:55 pilot3
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc       533 Nov 24 22:11 boinc_task_state.xml
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc 919892869 Nov 24 22:32 HITS.47523449._005029.pool.root.1
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc      1028 Nov 24 22:33 memory_monitor_summary.json
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc   1516227 Nov 24 22:33 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc   2532371 Nov 24 22:33 log.47523449._005029.job.log.tgz.1
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc      7263 Nov 24 22:35 heartbeat.json
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc        95 Nov 24 22:35 pilot_heartbeat.json
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc        29 Nov 24 22:36 wrapper_checkpoint.txt
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc      8192 Nov 24 22:36 boinc_mmap_file
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc      4884 Nov 24 22:36 pilotlog.txt
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc  11821663 Nov 24 22:36 log.47523449._005029.job.log.1
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc       353 Nov 24 22:36 output.list
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc       620 Nov 24 22:36 runtime_log
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc  14376960 Nov 24 22:36 result.tar.gz
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc      8817 Nov 24 22:36 runtime_log.err
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc       662 Nov 24 22:36 h7qMDmKhJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXhGKDmAGlgVm.diag
[2025-11-24 22:36:20] -rw-r--r--. 1 boinc boinc     21512 Nov 24 22:36 stderr.txt
[2025-11-24 22:36:20] HITS file was successfully produced:
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc 919892869 Nov 24 22:32 shared/HITS.pool.root.1
[2025-11-24 22:36:20]  *** Contents of shared directory: ***
[2025-11-24 22:36:20] total 1313428
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc 410063261 Nov 23 21:51 ATLAS.root_0
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc     15847 Nov 23 21:51 start_atlas.sh
[2025-11-24 22:36:20] -rw-r--r--. 2 boinc boinc    590098 Nov 23 21:51 input.tar.gz
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc 919892869 Nov 24 22:32 HITS.pool.root.1
[2025-11-24 22:36:20] -rw-------. 1 boinc boinc  14376960 Nov 24 22:36 result.tar.gz
22:36:21 (25410): run_atlas exited; CPU time 342523.312246
22:36:21 (25410): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN