Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:55:54 (1322497): wrapper (7.7.26015): starting
11:55:54 (1322497): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 11:55:54] Arguments: --nthreads 4
[2025-11-22 11:55:54] Threads: 4
[2025-11-22 11:55:54] Checking for CVMFS
[2025-11-22 11:55:54] No cvmfs_config command found, will try listing directly
[2025-11-22 11:55:54] CVMFS is ok
[2025-11-22 11:55:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 11:55:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 11:55:54] Further information can be found at the LHC@home message board.
[2025-11-22 11:55:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 11:55:54] Checking for apptainer binary...
[2025-11-22 11:55:54] which: no apptainer in ((null))
[2025-11-22 11:55:54] apptainer is not installed, using version from CVMFS
[2025-11-22 11:55:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 11:55:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-11-22 11:55:54] apptainer works
[2025-11-22 11:55:54] Set ATHENA_PROC_NUMBER=4
[2025-11-22 11:55:54] Set ATHENA_CORE_NUMBER=4
[2025-11-22 11:55:54] Starting ATLAS job with PandaID=6893847994
[2025-11-22 11:55:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 05:45:33]  *** The last 200 lines of the pilot log: ***
[2025-11-23 05:45:33] 2025-11-23 03:56:44,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 05:45:33] 2025-11-23 03:56:44,799 | INFO     | time since job start (61238s) is within the limit (172800.0s)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,326 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 05:45:33] 2025-11-23 03:56:45,337 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2625.0390937500006
[2025-11-23 05:45:33] 2025-11-23 03:56:45,350 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6893847994/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,351 | INFO     | extracted standard info from prmon json
[2025-11-23 05:45:33] 2025-11-23 03:56:45,351 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 05:45:33] 2025-11-23 03:56:45,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 05:45:33] 2025-11-23 03:56:45,370 | INFO     | fitting pss+swap vs Time
[2025-11-23 05:45:33] 2025-11-23 03:56:45,372 | INFO     | sum of square deviations: 313818933054.99585
[2025-11-23 05:45:33] 2025-11-23 03:56:45,393 | INFO     | sum of deviations: 1127903606782.3186
[2025-11-23 05:45:33] 2025-11-23 03:56:45,393 | INFO     | mean x: 1763839584.501992
[2025-11-23 05:45:33] 2025-11-23 03:56:45,393 | INFO     | mean y: 2286559.34063745
[2025-11-23 05:45:33] 2025-11-23 03:56:45,393 | INFO     | intersect: -6337168519.988752
[2025-11-23 05:45:33] 2025-11-23 03:56:45,395 | INFO     | chi2: 4.394511845915883
[2025-11-23 05:45:33] 2025-11-23 03:56:45,396 | INFO     | sum of square deviations: 309153711309.996
[2025-11-23 05:45:33] 2025-11-23 03:56:45,416 | INFO     | sum of deviations: 1355995048264.3203
[2025-11-23 05:45:33] 2025-11-23 03:56:45,417 | INFO     | mean x: 1763839432.002002
[2025-11-23 05:45:33] 2025-11-23 03:56:45,417 | INFO     | mean y: 2294009.83983984
[2025-11-23 05:45:33] 2025-11-23 03:56:45,417 | INFO     | intersect: -7734173152.703107
[2025-11-23 05:45:33] 2025-11-23 03:56:45,418 | INFO     | chi2: 1.8958998492016264
[2025-11-23 05:45:33] 2025-11-23 03:56:45,418 | INFO     | current chi2=1.8958998492016264 (change=56.85755515794969 %)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,420 | INFO     | sum of square deviations: 304534955552.49585
[2025-11-23 05:45:33] 2025-11-23 03:56:45,440 | INFO     | sum of deviations: 1346834455641.379
[2025-11-23 05:45:33] 2025-11-23 03:56:45,440 | INFO     | mean x: 1763839279.502012
[2025-11-23 05:45:33] 2025-11-23 03:56:45,441 | INFO     | mean y: 2293706.5603621732
[2025-11-23 05:45:33] 2025-11-23 03:56:45,441 | INFO     | intersect: -7798451240.886131
[2025-11-23 05:45:33] 2025-11-23 03:56:45,442 | INFO     | chi2: 1.8865374584490016
[2025-11-23 05:45:33] 2025-11-23 03:56:45,442 | INFO     | current chi2=1.8865374584490016 (change=0.4938230654202197 %)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,442 | INFO     | right removable region: 993
[2025-11-23 05:45:33] 2025-11-23 03:56:45,444 | INFO     | sum of square deviations: 309153710089.99603
[2025-11-23 05:45:33] 2025-11-23 03:56:45,464 | INFO     | sum of deviations: 941129935669.3805
[2025-11-23 05:45:33] 2025-11-23 03:56:45,464 | INFO     | mean x: 1763839737.002002
[2025-11-23 05:45:33] 2025-11-23 03:56:45,464 | INFO     | mean y: 2292655.3093093093
[2025-11-23 05:45:33] 2025-11-23 03:56:45,465 | INFO     | intersect: -5367212299.790719
[2025-11-23 05:45:33] 2025-11-23 03:56:45,466 | INFO     | chi2: 2.6114179267400637
[2025-11-23 05:45:33] 2025-11-23 03:56:45,466 | INFO     | current chi2=2.6114179267400637 (change=40.575471899864574 %)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,467 | INFO     | sum of square deviations: 304534953112.4958
[2025-11-23 05:45:33] 2025-11-23 03:56:45,488 | INFO     | sum of deviations: 910384682347.1005
[2025-11-23 05:45:33] 2025-11-23 03:56:45,488 | INFO     | mean x: 1763839889.502012
[2025-11-23 05:45:33] 2025-11-23 03:56:45,488 | INFO     | mean y: 2293669.9496981893
[2025-11-23 05:45:33] 2025-11-23 03:56:45,489 | INFO     | intersect: -5270575014.264223
[2025-11-23 05:45:33] 2025-11-23 03:56:45,490 | INFO     | chi2: 2.600121331689581
[2025-11-23 05:45:33] 2025-11-23 03:56:45,490 | INFO     | current chi2=2.600121331689581 (change=0.4325847247508501 %)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,490 | INFO     | left removable region: 20
[2025-11-23 05:45:33] 2025-11-23 03:56:45,491 | INFO     | sum of square deviations: 285638336603.9957
[2025-11-23 05:45:33] 2025-11-23 03:56:45,510 | INFO     | sum of deviations: 1077856951208.341
[2025-11-23 05:45:33] 2025-11-23 03:56:45,511 | INFO     | mean x: 1763839859.0020554
[2025-11-23 05:45:33] 2025-11-23 03:56:45,511 | INFO     | mean y: 2302529.829393628
[2025-11-23 05:45:33] 2025-11-23 03:56:45,511 | INFO     | intersect: -6653551426.775361
[2025-11-23 05:45:33] 2025-11-23 03:56:45,512 | INFO     | chi2: 0.0720091379911352
[2025-11-23 05:45:33] 2025-11-23 03:56:45,513 | INFO     | current memory leak: 3.77 B/s (using 973 data points, chi2=0.07)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,514 | INFO     | could have reported an average CPU frequency of 2648 MHz (37 samples)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,514 | INFO     | ..............................
[2025-11-23 05:45:33] 2025-11-23 03:56:45,514 | INFO     | . Timing measurements:
[2025-11-23 05:45:33] 2025-11-23 03:56:45,514 | INFO     | . get job = 0 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . initial setup = 1 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . payload setup = 6 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . stage-in = 0 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . payload execution = 61205 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . stage-out = 2 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | . log creation = 0 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,515 | INFO     | ..............................
[2025-11-23 05:45:33] 2025-11-23 03:56:45,687 | INFO     | 
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | job summary report
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | --------------------------------------------------
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | PanDA job id: 6893847994
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | task id: 47523449
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | errors: (none)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | pilot state: finished 
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | transexitcode: 0
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | exeerrorcode: 0
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | exeerrordiag: 
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | exitcode: 0
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | exitmsg: OK
[2025-11-23 05:45:33] 2025-11-23 03:56:45,688 | INFO     | cpuconsumptiontime: 242944 s
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | nevents: 1000
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | neventsw: 0
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | pid: 1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | pgrp: 1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | corecount: 4
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | event service: False
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | sizes: {0: 2298591, 1: 2298846, 6: 2299108, 12: 2299136, 61215: 2351650, 61216: 2351649, 61219: 2360905, 61224: 2361095}
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | --------------------------------------------------
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | 
[2025-11-23 05:45:33] 2025-11-23 03:56:45,689 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-11-23 05:45:33] 2025-11-23 03:56:45,710 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,713 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 05:45:33] 2025-11-23 03:56:45,713 | INFO     | job 6893847994 has completed (purged errors)
[2025-11-23 05:45:33] 2025-11-23 03:56:45,713 | INFO     | overall cleanup function is called
[2025-11-23 05:45:33] 2025-11-23 03:56:46,727 | INFO     | --- collectZombieJob: --- 10, [1333404]
[2025-11-23 05:45:33] 2025-11-23 03:56:46,727 | INFO     | zombie collector waiting for pid 1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:46,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 05:45:33] 2025-11-23 03:56:46,727 | INFO     | collected zombie processes
[2025-11-23 05:45:33] 2025-11-23 03:56:46,727 | INFO     | will attempt to kill all subprocesses of pid=1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:47,108 | INFO     | process IDs to be killed: [1333404] (in reverse order)
[2025-11-23 05:45:33] 2025-11-23 03:56:47,226 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 05:45:33] 2025-11-23 03:56:47,226 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 05:45:33] 2025-11-23 03:56:47,240 | INFO     | did not find any defunct processes belonging to 1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:47,253 | INFO     | did not find any defunct processes belonging to 1333404
[2025-11-23 05:45:33] 2025-11-23 03:56:47,254 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 05:45:33] 2025-11-23 03:56:47,255 | INFO     | ready for new job
[2025-11-23 05:45:33] 2025-11-23 03:56:47,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 05:45:33] 2025-11-23 03:56:47,261 | INFO     | ***************************************
[2025-11-23 05:45:33] 2025-11-23 03:56:47,261 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 05:45:33] 2025-11-23 03:56:47,261 | INFO     | ***************************************
[2025-11-23 05:45:33] 2025-11-23 03:56:47,261 | INFO     | 
[2025-11-23 05:45:33] 2025-11-23 03:56:47,266 | INFO     | architecture information:
[2025-11-23 05:45:33] 2025-11-23 03:56:47,266 | INFO     | executing command: cat /etc/os-release
[2025-11-23 05:45:33] 2025-11-23 03:56:47,281 | INFO     | cat /etc/os-release:
[2025-11-23 05:45:33] NAME="CentOS Linux"
[2025-11-23 05:45:33] VERSION="7 (Core)"
[2025-11-23 05:45:33] ID="centos"
[2025-11-23 05:45:33] ID_LIKE="rhel fedora"
[2025-11-23 05:45:33] VERSION_ID="7"
[2025-11-23 05:45:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 05:45:33] ANSI_COLOR="0;31"
[2025-11-23 05:45:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 05:45:33] HOME_URL="https://www.centos.org/"
[2025-11-23 05:45:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 05:45:33] 
[2025-11-23 05:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 05:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 05:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 05:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 05:45:33] 
[2025-11-23 05:45:33] 2025-11-23 03:56:47,282 | INFO     | ***************************************
[2025-11-23 05:45:33] 2025-11-23 03:56:47,785 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-11-23 05:45:33] 2025-11-23 03:56:47,804 | INFO     | sufficient remaining disk space (681900507136 B)
[2025-11-23 05:45:33] 2025-11-23 03:56:47,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 05:45:33] 2025-11-23 03:56:47,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 05:45:33] 2025-11-23 03:56:47,804 | INFO     | update_server=False
[2025-11-23 05:45:33] 2025-11-23 03:56:47,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 05:45:33] 2025-11-23 03:56:47,805 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:45:33] 2025-11-23 03:56:47,805 | INFO     | aborting loop
[2025-11-23 05:45:33] 2025-11-23 03:56:47,931 | INFO     | all job control threads have been joined
[2025-11-23 05:45:33] 2025-11-23 03:56:48,149 | INFO     | all payload control threads have been joined
[2025-11-23 05:45:33] 2025-11-23 03:56:48,165 | INFO     | all data control threads have been joined
[2025-11-23 05:45:33] 2025-11-23 03:56:48,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 05:45:33] 2025-11-23 03:56:48,805 | INFO     | [job] retrieve thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:48,807 | INFO     | [job] job monitor thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:48,876 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:48,935 | INFO     | [job] control thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,154 | INFO     | [payload] control thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,170 | INFO     | [data] control thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,299 | INFO     | [job] validate thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,538 | INFO     | [payload] failed_post thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,649 | INFO     | [payload] validate_post thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,803 | INFO     | [data] copytool_in thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,811 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:49,960 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:50,554 | INFO     | [data] copytool_out thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:50,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 05:45:33] 2025-11-23 03:56:51,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 05:45:33] 2025-11-23 03:56:51,634 | INFO     | [job] queue monitor thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:55,150 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:56:58,791 | INFO     | job.realtimelogging is not enabled
[2025-11-23 05:45:33] 2025-11-23 03:56:59,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 05:45:33] 2025-11-23 03:57:18,365 | INFO     | PID=1326408 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 05:45:33] 2025-11-23 03:57:18,365 | INFO     | .. there are 4 such processes running
[2025-11-23 05:45:33] 2025-11-23 03:57:18,366 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 05:45:33] 2025-11-23 03:57:18,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 05:45:33] 2025-11-23 03:57:18,366 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 05:45:33] 2025-11-23 03:57:44,659 | INFO     | [monitor] cgroup control has ended
[2025-11-23 05:45:33] 2025-11-23 03:57:46,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23079488354112)>', '<ExcThread(monitor, started 23079249999616)>']
[2025-11-23 05:45:33] 2025-11-23 03:57:47,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 05:45:33] 2025-11-23 03:57:47,482 | INFO     | [monitor] control thread has ended
[2025-11-23 05:45:33] 2025-11-23 03:57:51,748 | INFO     | all workflow threads have been joined
[2025-11-23 05:45:33] 2025-11-23 03:57:51,750 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 05:45:33] 2025-11-23 03:57:51,750 | INFO     | traces error code: 0
[2025-11-23 05:45:33] 2025-11-23 03:57:51,750 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 05:45:33] 2025-11-23 03:57:51,909 [wrapper] ==== pilot stdout END ====
[2025-11-23 05:45:33] 2025-11-23 03:57:51,912 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 05:45:33] 2025-11-23 03:57:51,914 [wrapper] pilotpid: 1326408
[2025-11-23 05:45:33] 2025-11-23 03:57:51,917 [wrapper] Pilot exit status: 0
[2025-11-23 05:45:33] 2025-11-23 03:57:51,927 [wrapper] pandaids: 6893847994
[2025-11-23 05:45:33] 2025-11-23 03:57:52,003 [wrapper] cleanup supervisor_pilot 2218098 1326409
[2025-11-23 05:45:33] 2025-11-23 03:57:52,006 [wrapper] Test setup, not cleaning
[2025-11-23 05:45:33] 2025-11-23 03:57:52,009 [wrapper] apfmon messages muted
[2025-11-23 05:45:33] 2025-11-23 03:57:52,011 [wrapper] ==== wrapper stdout END ====
[2025-11-23 05:45:33] 2025-11-23 03:57:52,014 [wrapper] ==== wrapper stderr END ====
[2025-11-23 05:45:33]  *** Error codes and diagnostics ***
[2025-11-23 05:45:33]     "exeErrorCode": 0,
[2025-11-23 05:45:33]     "exeErrorDiag": "",
[2025-11-23 05:45:33]     "pilotErrorCode": 0,
[2025-11-23 05:45:33]     "pilotErrorDiag": "",
[2025-11-23 05:45:33]  *** Listing of results directory ***
[2025-11-23 05:45:33] total 1313500
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-23 05:45:33] -rwx------ 1 boinc boinc     36292 Nov 20 11:27 runpilot2-wrapper.sh
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:27 queuedata.json
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc       100 Nov 22 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 05:45:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 11:55 run_atlas
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc       105 Nov 22 11:55 job.xml
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc      6634 Nov 22 11:55 init_data.xml
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc 408245439 Nov 22 11:55 EVNT.47493127._000251.pool.root.1
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc     15847 Nov 22 11:55 start_atlas.sh
[2025-11-23 05:45:33] drwxrwx--x 2 boinc boinc      4096 Nov 22 11:55 shared
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc    590099 Nov 22 11:55 input.tar.gz
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc         0 Nov 22 11:55 boinc_lockfile
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc      2786 Nov 22 11:55 pandaJob.out
[2025-11-23 05:45:33] -rw------- 1 boinc boinc    989768 Nov 22 11:56 agis_schedconf.cvmfs.json
[2025-11-23 05:45:33] drwx------ 5 boinc boinc      4096 Nov 22 11:56 pilot3
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc       532 Nov 23 04:50 boinc_task_state.xml
[2025-11-23 05:45:33] -rw------- 1 boinc boinc 912225026 Nov 23 04:55 HITS.47523449._002502.pool.root.1
[2025-11-23 05:45:33] -rw------- 1 boinc boinc      1045 Nov 23 04:56 memory_monitor_summary.json
[2025-11-23 05:45:33] -rw------- 1 boinc boinc   1526164 Nov 23 04:56 agis_ddmendpoints.agis.ALL.json
[2025-11-23 05:45:33] -rw------- 1 boinc boinc   1737061 Nov 23 04:56 log.47523449._002502.job.log.tgz.1
[2025-11-23 05:45:33] -rw------- 1 boinc boinc      8643 Nov 23 04:56 heartbeat.json
[2025-11-23 05:45:33] -rw------- 1 boinc boinc        95 Nov 23 04:57 pilot_heartbeat.json
[2025-11-23 05:45:33] -rw------- 1 boinc boinc      4905 Nov 23 04:57 pilotlog.txt
[2025-11-23 05:45:33] -rw------- 1 boinc boinc   8576563 Nov 23 04:57 log.47523449._002502.job.log.1
[2025-11-23 05:45:33] -rw------- 1 boinc boinc       353 Nov 23 04:57 output.list
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc       620 Nov 23 04:57 runtime_log
[2025-11-23 05:45:33] -rw------- 1 boinc boinc  10332160 Nov 23 04:57 result.tar.gz
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc      9206 Nov 23 04:57 runtime_log.err
[2025-11-23 05:45:33] -rw------- 1 boinc boinc       670 Nov 23 04:57 ZFSKDmp3Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVTHKDmMBUq3n.diag
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc        28 Nov 23 05:45 wrapper_checkpoint.txt
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc      8192 Nov 23 05:45 boinc_mmap_file
[2025-11-23 05:45:33] -rw-r--r-- 1 boinc boinc     21092 Nov 23 05:45 stderr.txt
[2025-11-23 05:45:33] HITS file was successfully produced:
[2025-11-23 05:45:33] -rw------- 1 boinc boinc 912225026 Nov 23 04:55 shared/HITS.pool.root.1
[2025-11-23 05:45:33]  *** Contents of shared directory: ***
[2025-11-23 05:45:33] total 1300224
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc 408245439 Nov 22 11:55 ATLAS.root_0
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc     15847 Nov 22 11:55 start_atlas.sh
[2025-11-23 05:45:33] -rw-r--r-- 2 boinc boinc    590099 Nov 22 11:55 input.tar.gz
[2025-11-23 05:45:33] -rw------- 1 boinc boinc 912225026 Nov 23 04:55 HITS.pool.root.1
[2025-11-23 05:45:33] -rw------- 1 boinc boinc  10332160 Nov 23 04:57 result.tar.gz
05:45:35 (1322497): run_atlas exited; CPU time 245223.078899
05:45:35 (1322497): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN