Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:23:49 (3666456): wrapper (7.7.26015): starting
00:23:49 (3666456): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:23:49] Arguments: --nthreads 4
[2025-11-21 00:23:49] Threads: 4
[2025-11-21 00:23:49] Checking for CVMFS
[2025-11-21 00:23:49] No cvmfs_config command found, will try listing directly
[2025-11-21 00:23:49] CVMFS is ok
[2025-11-21 00:23:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:23:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:23:49] Further information can be found at the LHC@home message board.
[2025-11-21 00:23:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:23:49] Checking for apptainer binary...
[2025-11-21 00:23:49] which: no apptainer in ((null))
[2025-11-21 00:23:49] apptainer is not installed, using version from CVMFS
[2025-11-21 00:23:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:23:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2025-11-21 00:23:49] apptainer works
[2025-11-21 00:23:49] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:23:49] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:23:49] Starting ATLAS job with PandaID=6893840223
[2025-11-21 00:23:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:48:02]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:48:02] 2025-11-21 17:40:05,138 | INFO     | time since job start (65762s) is within the limit (172800.0s)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,383 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 18:48:02] 2025-11-21 17:40:05,393 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2603.0979375000015
[2025-11-21 18:48:02] 2025-11-21 17:40:05,406 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6893840223/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,407 | INFO     | extracted standard info from prmon json
[2025-11-21 18:48:02] 2025-11-21 17:40:05,407 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:48:02] 2025-11-21 17:40:05,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:48:02] 2025-11-21 17:40:05,426 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:48:02] 2025-11-21 17:40:05,428 | INFO     | sum of square deviations: 388449477540.66516
[2025-11-21 18:48:02] 2025-11-21 17:40:05,452 | INFO     | sum of deviations: 866068337016.6388
[2025-11-21 18:48:02] 2025-11-21 17:40:05,452 | INFO     | mean x: 1763713919.5278294
[2025-11-21 18:48:02] 2025-11-21 17:40:05,452 | INFO     | mean y: 2287071.512059369
[2025-11-21 18:48:02] 2025-11-21 17:40:05,453 | INFO     | intersect: -3930004949.909589
[2025-11-21 18:48:02] 2025-11-21 17:40:05,454 | INFO     | chi2: 4.560750893145369
[2025-11-21 18:48:02] 2025-11-21 17:40:05,456 | INFO     | sum of square deviations: 383069376513.16156
[2025-11-21 18:48:02] 2025-11-21 17:40:05,479 | INFO     | sum of deviations: 1119475560396.1023
[2025-11-21 18:48:02] 2025-11-21 17:40:05,479 | INFO     | mean x: 1763713767.027959
[2025-11-21 18:48:02] 2025-11-21 17:40:05,479 | INFO     | mean y: 2294249.763280522
[2025-11-21 18:48:02] 2025-11-21 17:40:05,480 | INFO     | intersect: -5151953462.998241
[2025-11-21 18:48:02] 2025-11-21 17:40:05,481 | INFO     | chi2: 1.910264867408793
[2025-11-21 18:48:02] 2025-11-21 17:40:05,481 | INFO     | current chi2=1.910264867408793 (change=58.11512375561123 %)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,483 | INFO     | sum of square deviations: 377739183398.15704
[2025-11-21 18:48:02] 2025-11-21 17:40:05,506 | INFO     | sum of deviations: 1123392433730.2354
[2025-11-21 18:48:02] 2025-11-21 17:40:05,506 | INFO     | mean x: 1763713614.52809
[2025-11-21 18:48:02] 2025-11-21 17:40:05,506 | INFO     | mean y: 2294360.0421348317
[2025-11-21 18:48:02] 2025-11-21 17:40:05,507 | INFO     | intersect: -5242971730.712928
[2025-11-21 18:48:02] 2025-11-21 17:40:05,508 | INFO     | chi2: 1.8756306697372784
[2025-11-21 18:48:02] 2025-11-21 17:40:05,508 | INFO     | current chi2=1.8756306697372784 (change=1.8130573546324291 %)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,508 | INFO     | right removable region: 1067
[2025-11-21 18:48:02] 2025-11-21 17:40:05,509 | INFO     | sum of square deviations: 383069358213.16144
[2025-11-21 18:48:02] 2025-11-21 17:40:05,533 | INFO     | sum of deviations: 673870562668.3253
[2025-11-21 18:48:02] 2025-11-21 17:40:05,534 | INFO     | mean x: 1763714072.027959
[2025-11-21 18:48:02] 2025-11-21 17:40:05,534 | INFO     | mean y: 2292510.7558247903
[2025-11-21 18:48:02] 2025-11-21 17:40:05,534 | INFO     | intersect: -3100317939.8617554
[2025-11-21 18:48:02] 2025-11-21 17:40:05,535 | INFO     | chi2: 2.8157555468842785
[2025-11-21 18:48:02] 2025-11-21 17:40:05,535 | INFO     | current chi2=2.8157555468842785 (change=38.261141359063274 %)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,537 | INFO     | sum of square deviations: 377739146798.1568
[2025-11-21 18:48:02] 2025-11-21 17:40:05,560 | INFO     | sum of deviations: 654845902312.7748
[2025-11-21 18:48:02] 2025-11-21 17:40:05,561 | INFO     | mean x: 1763714224.52809
[2025-11-21 18:48:02] 2025-11-21 17:40:05,561 | INFO     | mean y: 2293054.5908239703
[2025-11-21 18:48:02] 2025-11-21 17:40:05,561 | INFO     | intersect: -3055269399.745213
[2025-11-21 18:48:02] 2025-11-21 17:40:05,562 | INFO     | chi2: 2.8119585340738924
[2025-11-21 18:48:02] 2025-11-21 17:40:05,562 | INFO     | current chi2=2.8119585340738924 (change=0.1348488086825452 %)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,563 | INFO     | left removable region: 20
[2025-11-21 18:48:02] 2025-11-21 17:40:05,564 | INFO     | sum of square deviations: 355892045049.1402
[2025-11-21 18:48:02] 2025-11-21 17:40:05,587 | INFO     | sum of deviations: 897080565177.2548
[2025-11-21 18:48:02] 2025-11-21 17:40:05,587 | INFO     | mean x: 1763714194.0286534
[2025-11-21 18:48:02] 2025-11-21 17:40:05,587 | INFO     | mean y: 2300721.358166189
[2025-11-21 18:48:02] 2025-11-21 17:40:05,587 | INFO     | intersect: -4443411814.228033
[2025-11-21 18:48:02] 2025-11-21 17:40:05,588 | INFO     | chi2: 0.1083403863770222
[2025-11-21 18:48:02] 2025-11-21 17:40:05,589 | INFO     | current memory leak: 2.52 B/s (using 1047 data points, chi2=0.11)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | could have reported an average CPU frequency of 2568 MHz (40 samples)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | ..............................
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . Timing measurements:
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . get job = 0 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . initial setup = 1 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . payload setup = 6 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . stage-in = 0 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,590 | INFO     | . payload execution = 65724 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,591 | INFO     | . stage-out = 3 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,591 | INFO     | . log creation = 0 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,591 | INFO     | ..............................
[2025-11-21 18:48:02] 2025-11-21 17:40:05,692 | INFO     | 
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | job summary report
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | --------------------------------------------------
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | PanDA job id: 6893840223
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | task id: 47523449
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | errors: (none)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | pilot state: finished 
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | transexitcode: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | exeerrorcode: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:05,693 | INFO     | exeerrordiag: 
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | exitcode: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | exitmsg: OK
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | cpuconsumptiontime: 259178 s
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | nevents: 1000
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | neventsw: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | pid: 3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | pgrp: 3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | corecount: 4
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | event service: False
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | sizes: {0: 2298818, 1: 2298818, 5: 2299108, 11: 2299164, 65735: 2352913, 65738: 2362113, 65746: 2362303}
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | --------------------------------------------------
[2025-11-21 18:48:02] 2025-11-21 17:40:05,694 | INFO     | 
[2025-11-21 18:48:02] 2025-11-21 17:40:05,695 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-11-21 18:48:02] 2025-11-21 17:40:05,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:48:02] 2025-11-21 17:40:05,720 | INFO     | job 6893840223 has completed (purged errors)
[2025-11-21 18:48:02] 2025-11-21 17:40:05,721 | INFO     | overall cleanup function is called
[2025-11-21 18:48:02] 2025-11-21 17:40:06,735 | INFO     | --- collectZombieJob: --- 10, [3677897]
[2025-11-21 18:48:02] 2025-11-21 17:40:06,735 | INFO     | zombie collector waiting for pid 3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:06,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:48:02] 2025-11-21 17:40:06,736 | INFO     | collected zombie processes
[2025-11-21 18:48:02] 2025-11-21 17:40:06,736 | INFO     | will attempt to kill all subprocesses of pid=3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:07,163 | INFO     | process IDs to be killed: [3677897] (in reverse order)
[2025-11-21 18:48:02] 2025-11-21 17:40:07,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:48:02] 2025-11-21 17:40:07,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:48:02] 2025-11-21 17:40:07,307 | INFO     | did not find any defunct processes belonging to 3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:07,321 | INFO     | did not find any defunct processes belonging to 3677897
[2025-11-21 18:48:02] 2025-11-21 17:40:07,322 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:48:02] 2025-11-21 17:40:07,322 | INFO     | ready for new job
[2025-11-21 18:48:02] 2025-11-21 17:40:07,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:48:02] 2025-11-21 17:40:07,328 | INFO     | ***************************************
[2025-11-21 18:48:02] 2025-11-21 17:40:07,329 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:48:02] 2025-11-21 17:40:07,329 | INFO     | ***************************************
[2025-11-21 18:48:02] 2025-11-21 17:40:07,329 | INFO     | 
[2025-11-21 18:48:02] 2025-11-21 17:40:07,333 | INFO     | architecture information:
[2025-11-21 18:48:02] 2025-11-21 17:40:07,333 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:48:02] 2025-11-21 17:40:07,351 | INFO     | cat /etc/os-release:
[2025-11-21 18:48:02] NAME="CentOS Linux"
[2025-11-21 18:48:02] VERSION="7 (Core)"
[2025-11-21 18:48:02] ID="centos"
[2025-11-21 18:48:02] ID_LIKE="rhel fedora"
[2025-11-21 18:48:02] VERSION_ID="7"
[2025-11-21 18:48:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:48:02] ANSI_COLOR="0;31"
[2025-11-21 18:48:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:48:02] HOME_URL="https://www.centos.org/"
[2025-11-21 18:48:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:48:02] 
[2025-11-21 18:48:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:48:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:48:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:48:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:48:02] 
[2025-11-21 18:48:02] 2025-11-21 17:40:07,352 | INFO     | ***************************************
[2025-11-21 18:48:02] 2025-11-21 17:40:07,854 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-11-21 18:48:02] 2025-11-21 17:40:07,873 | INFO     | sufficient remaining disk space (671394824192 B)
[2025-11-21 18:48:02] 2025-11-21 17:40:07,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:48:02] 2025-11-21 17:40:07,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:48:02] 2025-11-21 17:40:07,874 | INFO     | update_server=False
[2025-11-21 18:48:02] 2025-11-21 17:40:07,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:48:02] 2025-11-21 17:40:08,052 | INFO     | all data control threads have been joined
[2025-11-21 18:48:02] 2025-11-21 17:40:08,108 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 18:48:02] 2025-11-21 17:40:08,108 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 18:48:02] 2025-11-21 17:40:08,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:48:02] 2025-11-21 17:40:08,108 | INFO     | will abort loop
[2025-11-21 18:48:02] 2025-11-21 17:40:08,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:48:02] 2025-11-21 17:40:08,378 | INFO     | all job control threads have been joined
[2025-11-21 18:48:02] 2025-11-21 17:40:08,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:48:02] 2025-11-21 17:40:08,756 | INFO     | all payload control threads have been joined
[2025-11-21 18:48:02] 2025-11-21 17:40:08,879 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:08,962 | INFO     | [job] validate thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,057 | INFO     | [data] control thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,112 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,113 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,132 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,383 | INFO     | [job] control thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,710 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,761 | INFO     | [payload] control thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,838 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:09,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:10,052 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:10,101 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:10,370 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:10,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:48:02] 2025-11-21 17:40:11,708 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:12,461 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:48:02] 2025-11-21 17:40:38,765 | INFO     | PID=3670554 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 18:48:02] 2025-11-21 17:40:38,766 | INFO     | .. there are 5 such processes running
[2025-11-21 18:48:02] 2025-11-21 17:40:38,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:48:02] 2025-11-21 17:40:38,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:48:02] 2025-11-21 17:40:38,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:48:02] 2025-11-21 17:40:52,267 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:48:02] 2025-11-21 17:40:52,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22906912847680)>', '<ExcThread(monitor, started 22906675365632)>']
[2025-11-21 18:48:02] 2025-11-21 17:40:53,835 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:48:02] 2025-11-21 17:40:53,835 | INFO     | [monitor] control thread has ended
[2025-11-21 18:48:02] 2025-11-21 17:40:57,992 | INFO     | all workflow threads have been joined
[2025-11-21 18:48:02] 2025-11-21 17:40:57,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:48:02] 2025-11-21 17:40:57,992 | INFO     | traces error code: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:57,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:48:02] 2025-11-21 17:40:58,133 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:48:02] 2025-11-21 17:40:58,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:48:02] 2025-11-21 17:40:58,138 [wrapper] pilotpid: 3670554
[2025-11-21 18:48:02] 2025-11-21 17:40:58,141 [wrapper] Pilot exit status: 0
[2025-11-21 18:48:02] 2025-11-21 17:40:58,153 [wrapper] pandaids: 6893840223
[2025-11-21 18:48:02] 2025-11-21 17:40:58,238 [wrapper] cleanup supervisor_pilot  503497 3670555
[2025-11-21 18:48:02] 2025-11-21 17:40:58,242 [wrapper] Test setup, not cleaning
[2025-11-21 18:48:02] 2025-11-21 17:40:58,245 [wrapper] apfmon messages muted
[2025-11-21 18:48:02] 2025-11-21 17:40:58,247 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:48:02] 2025-11-21 17:40:58,251 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:48:02]  *** Error codes and diagnostics ***
[2025-11-21 18:48:02]     "exeErrorCode": 0,
[2025-11-21 18:48:02]     "exeErrorDiag": "",
[2025-11-21 18:48:02]     "pilotErrorCode": 0,
[2025-11-21 18:48:02]     "pilotErrorDiag": "",
[2025-11-21 18:48:02]  *** Listing of results directory ***
[2025-11-21 18:48:02] total 1329532
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-21 18:48:02] -rwx------ 1 boinc boinc     36292 Nov 20 11:20 runpilot2-wrapper.sh
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:48:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:48 run_atlas
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:48 job.xml
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc 411821415 Nov 21 00:23 EVNT.47493127._000167.pool.root.1
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc      6634 Nov 21 00:23 init_data.xml
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:23 start_atlas.sh
[2025-11-21 18:48:02] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:23 shared
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc    590101 Nov 21 00:23 input.tar.gz
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:23 boinc_lockfile
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc      2786 Nov 21 00:23 pandaJob.out
[2025-11-21 18:48:02] -rw------- 1 boinc boinc    989817 Nov 21 00:24 agis_schedconf.cvmfs.json
[2025-11-21 18:48:02] drwx------ 5 boinc boinc      4096 Nov 21 00:24 pilot3
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc       531 Nov 21 18:33 boinc_task_state.xml
[2025-11-21 18:48:02] -rw------- 1 boinc boinc 923765895 Nov 21 18:39 HITS.47523449._001669.pool.root.1
[2025-11-21 18:48:02] -rw------- 1 boinc boinc      1043 Nov 21 18:39 memory_monitor_summary.json
[2025-11-21 18:48:02] -rw------- 1 boinc boinc   1526164 Nov 21 18:39 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:48:02] -rw------- 1 boinc boinc   1792254 Nov 21 18:39 log.47523449._001669.job.log.tgz.1
[2025-11-21 18:48:02] -rw------- 1 boinc boinc      7961 Nov 21 18:40 heartbeat.json
[2025-11-21 18:48:02] -rw------- 1 boinc boinc        95 Nov 21 18:40 pilot_heartbeat.json
[2025-11-21 18:48:02] -rw------- 1 boinc boinc      5020 Nov 21 18:40 pilotlog.txt
[2025-11-21 18:48:02] -rw------- 1 boinc boinc   9172441 Nov 21 18:40 log.47523449._001669.job.log.1
[2025-11-21 18:48:02] -rw------- 1 boinc boinc       353 Nov 21 18:40 output.list
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:40 runtime_log
[2025-11-21 18:48:02] -rw------- 1 boinc boinc  10987520 Nov 21 18:40 result.tar.gz
[2025-11-21 18:48:02] -rw------- 1 boinc boinc       671 Nov 21 18:40 vJANDmrwGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjMHKDmUAA1mn.diag
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc      9206 Nov 21 18:40 runtime_log.err
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc        28 Nov 21 18:48 wrapper_checkpoint.txt
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:48 boinc_mmap_file
[2025-11-21 18:48:02] -rw-r--r-- 1 boinc boinc     21079 Nov 21 18:48 stderr.txt
[2025-11-21 18:48:02] HITS file was successfully produced:
[2025-11-21 18:48:02] -rw------- 1 boinc boinc 923765895 Nov 21 18:39 shared/HITS.pool.root.1
[2025-11-21 18:48:02]  *** Contents of shared directory: ***
[2025-11-21 18:48:02] total 1315624
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc 411821415 Nov 21 00:23 ATLAS.root_0
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:23 start_atlas.sh
[2025-11-21 18:48:02] -rw-r--r-- 2 boinc boinc    590101 Nov 21 00:23 input.tar.gz
[2025-11-21 18:48:02] -rw------- 1 boinc boinc 923765895 Nov 21 18:39 HITS.pool.root.1
[2025-11-21 18:48:02] -rw------- 1 boinc boinc  10987520 Nov 21 18:40 result.tar.gz
18:48:04 (3666456): run_atlas exited; CPU time 261714.739715
18:48:04 (3666456): called boinc_finish(0)

</stderr_txt>
]]>

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