Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:01:38 (2523671): wrapper (7.7.26015): starting
05:01:38 (2523671): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 05:01:38] Arguments: --nthreads 4
[2025-11-24 05:01:38] Threads: 4
[2025-11-24 05:01:38] Checking for CVMFS
[2025-11-24 05:01:38] No cvmfs_config command found, will try listing directly
[2025-11-24 05:01:38] CVMFS is ok
[2025-11-24 05:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:01:38] Further information can be found at the LHC@home message board.
[2025-11-24 05:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:01:38] Checking for apptainer binary...
[2025-11-24 05:01:38] which: no apptainer in ((null))
[2025-11-24 05:01:38] apptainer is not installed, using version from CVMFS
[2025-11-24 05:01:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:01:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-24 05:01:38] apptainer works
[2025-11-24 05:01:38] Set ATHENA_PROC_NUMBER=4
[2025-11-24 05:01:38] Set ATHENA_CORE_NUMBER=4
[2025-11-24 05:01:38] Starting ATLAS job with PandaID=6893858427
[2025-11-24 05:01:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:09:44]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:09:44] 2025-11-24 20:07:30,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:09:44] 2025-11-24 20:07:30,298 | INFO     | time since job start (57937s) is within the limit (172800.0s)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,175 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 21:09:44] 2025-11-24 20:07:32,197 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2660.381546875
[2025-11-24 21:09:44] 2025-11-24 20:07:32,223 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6893858427/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,224 | INFO     | extracted standard info from prmon json
[2025-11-24 21:09:44] 2025-11-24 20:07:32,224 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:09:44] 2025-11-24 20:07:32,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:09:44] 2025-11-24 20:07:32,240 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:09:44] 2025-11-24 20:07:32,241 | INFO     | sum of square deviations: 265017959823.28748
[2025-11-24 21:09:44] 2025-11-24 20:07:32,262 | INFO     | sum of deviations: 884050712516.4248
[2025-11-24 21:09:44] 2025-11-24 20:07:32,263 | INFO     | mean x: 1763985863.0273972
[2025-11-24 21:09:44] 2025-11-24 20:07:32,263 | INFO     | mean y: 2270281.1759747104
[2025-11-24 21:09:44] 2025-11-24 20:07:32,263 | INFO     | intersect: -5882059068.118336
[2025-11-24 21:09:44] 2025-11-24 20:07:32,264 | INFO     | chi2: 4.276486288940504
[2025-11-24 21:09:44] 2025-11-24 20:07:32,265 | INFO     | sum of square deviations: 260851080323.284
[2025-11-24 21:09:44] 2025-11-24 20:07:32,286 | INFO     | sum of deviations: 1083607009182.5267
[2025-11-24 21:09:44] 2025-11-24 20:07:32,286 | INFO     | mean x: 1763985710.5275424
[2025-11-24 21:09:44] 2025-11-24 20:07:32,286 | INFO     | mean y: 2277581.36440678
[2025-11-24 21:09:44] 2025-11-24 20:07:32,286 | INFO     | intersect: -7325532898.30277
[2025-11-24 21:09:44] 2025-11-24 20:07:32,287 | INFO     | chi2: 1.9790186353272494
[2025-11-24 21:09:44] 2025-11-24 20:07:32,288 | INFO     | current chi2=1.9790186353272494 (change=53.723255457518384 %)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,289 | INFO     | sum of square deviations: 256728108623.2784
[2025-11-24 21:09:44] 2025-11-24 20:07:32,309 | INFO     | time since job start (57939s) is within the limit (172800.0s)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,310 | INFO     | sum of deviations: 1078208851921.1436
[2025-11-24 21:09:44] 2025-11-24 20:07:32,311 | INFO     | mean x: 1763985558.027689
[2025-11-24 21:09:44] 2025-11-24 20:07:32,311 | INFO     | mean y: 2277380.3791267304
[2025-11-24 21:09:44] 2025-11-24 20:07:32,311 | INFO     | intersect: -7406123879.326397
[2025-11-24 21:09:44] 2025-11-24 20:07:32,312 | INFO     | chi2: 1.9662948380569085
[2025-11-24 21:09:44] 2025-11-24 20:07:32,312 | INFO     | current chi2=1.9662948380569085 (change=0.6429346870822616 %)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,312 | INFO     | right removable region: 938
[2025-11-24 21:09:44] 2025-11-24 20:07:32,313 | INFO     | sum of square deviations: 260851064463.284
[2025-11-24 21:09:44] 2025-11-24 20:07:32,336 | INFO     | sum of deviations: 710482556785.472
[2025-11-24 21:09:44] 2025-11-24 20:07:32,337 | INFO     | mean x: 1763986015.5275424
[2025-11-24 21:09:44] 2025-11-24 20:07:32,337 | INFO     | mean y: 2276622.001059322
[2025-11-24 21:09:44] 2025-11-24 20:07:32,337 | INFO     | intersect: -4802309079.132741
[2025-11-24 21:09:44] 2025-11-24 20:07:32,338 | INFO     | chi2: 2.422555615417714
[2025-11-24 21:09:44] 2025-11-24 20:07:32,338 | INFO     | current chi2=2.422555615417714 (change=43.35172728876209 %)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,339 | INFO     | sum of square deviations: 256728076903.27844
[2025-11-24 21:09:44] 2025-11-24 20:07:32,364 | INFO     | sum of deviations: 686167310858.3064
[2025-11-24 21:09:44] 2025-11-24 20:07:32,364 | INFO     | mean x: 1763986168.027689
[2025-11-24 21:09:44] 2025-11-24 20:07:32,364 | INFO     | mean y: 2277521.680511182
[2025-11-24 21:09:44] 2025-11-24 20:07:32,364 | INFO     | intersect: -4712398254.755187
[2025-11-24 21:09:44] 2025-11-24 20:07:32,365 | INFO     | chi2: 2.4141225501802097
[2025-11-24 21:09:44] 2025-11-24 20:07:32,365 | INFO     | current chi2=2.4141225501802097 (change=0.34810615631832803 %)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,365 | INFO     | left removable region: 20
[2025-11-24 21:09:44] 2025-11-24 20:07:32,366 | INFO     | sum of square deviations: 239885788748.76355
[2025-11-24 21:09:44] 2025-11-24 20:07:32,386 | INFO     | sum of deviations: 823904906197.455
[2025-11-24 21:09:44] 2025-11-24 20:07:32,387 | INFO     | mean x: 1763986137.5283225
[2025-11-24 21:09:44] 2025-11-24 20:07:32,387 | INFO     | mean y: 2286716.924836601
[2025-11-24 21:09:44] 2025-11-24 20:07:32,387 | INFO     | intersect: -6056249892.328031
[2025-11-24 21:09:44] 2025-11-24 20:07:32,388 | INFO     | chi2: 0.07346340470308298
[2025-11-24 21:09:44] 2025-11-24 20:07:32,388 | INFO     | current memory leak: 3.43 B/s (using 918 data points, chi2=0.07)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | could have reported an average CPU frequency of 2663 MHz (35 samples)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | ..............................
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . Timing measurements:
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . get job = 0 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . initial setup = 1 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . payload setup = 9 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . stage-in = 0 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . payload execution = 57893 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,391 | INFO     | . stage-out = 4 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,392 | INFO     | . log creation = 0 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,392 | INFO     | ..............................
[2025-11-24 21:09:44] 2025-11-24 20:07:32,502 | INFO     | 
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | job summary report
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | --------------------------------------------------
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | PanDA job id: 6893858427
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | task id: 47523449
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | errors: (none)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | pilot state: finished 
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | transexitcode: 0
[2025-11-24 21:09:44] 2025-11-24 20:07:32,503 | INFO     | exeerrorcode: 0
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | exeerrordiag: 
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | exitcode: 0
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | exitmsg: OK
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | cpuconsumptiontime: 228582 s
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | nevents: 1000
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | neventsw: 0
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | pid: 2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | pgrp: 2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | corecount: 4
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | event service: False
[2025-11-24 21:09:44] 2025-11-24 20:07:32,504 | INFO     | sizes: {0: 2298648, 1: 2298847, 8: 2299109, 11: 2299137, 57906: 2353425, 57912: 2363234, 57913: 2363418, 57921: 2363664}
[2025-11-24 21:09:44] 2025-11-24 20:07:32,505 | INFO     | --------------------------------------------------
[2025-11-24 21:09:44] 2025-11-24 20:07:32,505 | INFO     | 
[2025-11-24 21:09:44] 2025-11-24 20:07:32,505 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | job 6893858427 has completed (purged errors)
[2025-11-24 21:09:44] 2025-11-24 20:07:32,542 | INFO     | overall cleanup function is called
[2025-11-24 21:09:44] 2025-11-24 20:07:33,569 | INFO     | --- collectZombieJob: --- 10, [2535520]
[2025-11-24 21:09:44] 2025-11-24 20:07:33,569 | INFO     | zombie collector waiting for pid 2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:33,570 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:09:44] 2025-11-24 20:07:33,570 | INFO     | collected zombie processes
[2025-11-24 21:09:44] 2025-11-24 20:07:33,570 | INFO     | will attempt to kill all subprocesses of pid=2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:34,410 | INFO     | process IDs to be killed: [2535520] (in reverse order)
[2025-11-24 21:09:44] 2025-11-24 20:07:34,706 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:09:44] 2025-11-24 20:07:34,706 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:09:44] 2025-11-24 20:07:34,745 | INFO     | did not find any defunct processes belonging to 2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:34,777 | INFO     | did not find any defunct processes belonging to 2535520
[2025-11-24 21:09:44] 2025-11-24 20:07:34,778 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:09:44] 2025-11-24 20:07:34,778 | INFO     | ready for new job
[2025-11-24 21:09:44] 2025-11-24 20:07:34,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:09:44] 2025-11-24 20:07:34,786 | INFO     | ***************************************
[2025-11-24 21:09:44] 2025-11-24 20:07:34,786 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:09:44] 2025-11-24 20:07:34,786 | INFO     | ***************************************
[2025-11-24 21:09:44] 2025-11-24 20:07:34,786 | INFO     | 
[2025-11-24 21:09:44] 2025-11-24 20:07:34,795 | INFO     | architecture information:
[2025-11-24 21:09:44] 2025-11-24 20:07:34,796 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:09:44] 2025-11-24 20:07:34,821 | INFO     | cat /etc/os-release:
[2025-11-24 21:09:44] NAME="CentOS Linux"
[2025-11-24 21:09:44] VERSION="7 (Core)"
[2025-11-24 21:09:44] ID="centos"
[2025-11-24 21:09:44] ID_LIKE="rhel fedora"
[2025-11-24 21:09:44] VERSION_ID="7"
[2025-11-24 21:09:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:09:44] ANSI_COLOR="0;31"
[2025-11-24 21:09:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:09:44] HOME_URL="https://www.centos.org/"
[2025-11-24 21:09:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:09:44] 
[2025-11-24 21:09:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:09:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:09:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:09:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:09:44] 
[2025-11-24 21:09:44] 2025-11-24 20:07:34,822 | INFO     | ***************************************
[2025-11-24 21:09:44] 2025-11-24 20:07:35,325 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2025-11-24 21:09:44] 2025-11-24 20:07:35,348 | INFO     | sufficient remaining disk space (3271723843584 B)
[2025-11-24 21:09:44] 2025-11-24 20:07:35,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:09:44] 2025-11-24 20:07:35,349 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:09:44] 2025-11-24 20:07:35,349 | INFO     | update_server=False
[2025-11-24 21:09:44] 2025-11-24 20:07:35,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:09:44] 2025-11-24 20:07:35,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:09:44] 2025-11-24 20:07:35,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:09:44] 2025-11-24 20:07:35,557 | INFO     | all payload control threads have been joined
[2025-11-24 21:09:44] 2025-11-24 20:07:36,073 | INFO     | all data control threads have been joined
[2025-11-24 21:09:44] 2025-11-24 20:07:36,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:09:44] 2025-11-24 20:07:36,241 | INFO     | aborting loop
[2025-11-24 21:09:44] 2025-11-24 20:07:36,353 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:36,562 | INFO     | [payload] control thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:36,677 | INFO     | all job control threads have been joined
[2025-11-24 21:09:44] 2025-11-24 20:07:36,791 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:36,911 | INFO     | [job] validate thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:36,926 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,012 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,078 | INFO     | [data] control thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,125 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,245 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,354 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,357 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,509 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:09:44] 2025-11-24 20:07:37,680 | INFO     | [job] control thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:37,916 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:38,514 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:07:39,356 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:09:44] 2025-11-24 20:08:06,322 | INFO     | PID=2527990 has CPU usage=16.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 21:09:44] 2025-11-24 20:08:06,322 | INFO     | .. there are 9 such processes running
[2025-11-24 21:09:44] 2025-11-24 20:08:06,323 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:09:44] 2025-11-24 20:08:06,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:09:44] 2025-11-24 20:08:06,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:09:44] 2025-11-24 20:08:28,770 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:09:44] 2025-11-24 20:08:29,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22839029180224)>', '<ExcThread(monitor, started 22838790551296)>']
[2025-11-24 21:09:44] 2025-11-24 20:08:29,450 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:09:44] 2025-11-24 20:08:29,451 | INFO     | [monitor] control thread has ended
[2025-11-24 21:09:44] 2025-11-24 20:08:34,446 | INFO     | all workflow threads have been joined
[2025-11-24 21:09:44] 2025-11-24 20:08:34,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:09:44] 2025-11-24 20:08:34,447 | INFO     | traces error code: 0
[2025-11-24 21:09:44] 2025-11-24 20:08:34,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:09:44] 2025-11-24 20:08:34,601 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:09:44] 2025-11-24 20:08:34,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:09:44] 2025-11-24 20:08:34,609 [wrapper] pilotpid: 2527990
[2025-11-24 21:09:44] 2025-11-24 20:08:34,614 [wrapper] Pilot exit status: 0
[2025-11-24 21:09:44] 2025-11-24 20:08:34,631 [wrapper] pandaids: 6893858427
[2025-11-24 21:09:44] 2025-11-24 20:08:34,823 [wrapper] cleanup supervisor_pilot 4098031 2527991
[2025-11-24 21:09:44] 2025-11-24 20:08:34,827 [wrapper] Test setup, not cleaning
[2025-11-24 21:09:44] 2025-11-24 20:08:34,831 [wrapper] apfmon messages muted
[2025-11-24 21:09:44] 2025-11-24 20:08:34,834 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:09:44] 2025-11-24 20:08:34,838 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:09:44]  *** Error codes and diagnostics ***
[2025-11-24 21:09:44]     "exeErrorCode": 0,
[2025-11-24 21:09:44]     "exeErrorDiag": "",
[2025-11-24 21:09:44]     "pilotErrorCode": 0,
[2025-11-24 21:09:44]     "pilotErrorDiag": "",
[2025-11-24 21:09:44]  *** Listing of results directory ***
[2025-11-24 21:09:44] total 1313228
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-24 21:09:44] -rwx------ 1 boinc boinc     36292 Nov 20 14:22 runpilot2-wrapper.sh
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:22 queuedata.json
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc       100 Nov 24 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:09:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 05:01 run_atlas
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc       105 Nov 24 05:01 job.xml
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc      6686 Nov 24 05:01 init_data.xml
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc 407656346 Nov 24 05:01 EVNT.47493127._000514.pool.root.1
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:01 start_atlas.sh
[2025-11-24 21:09:44] drwxrwx--x 2 boinc boinc      4096 Nov 24 05:01 shared
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc    590097 Nov 24 05:01 input.tar.gz
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc         0 Nov 24 05:01 boinc_lockfile
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc      2786 Nov 24 05:01 pandaJob.out
[2025-11-24 21:09:44] -rw------- 1 boinc boinc    989786 Nov 24 05:01 agis_schedconf.cvmfs.json
[2025-11-24 21:09:44] drwx------ 5 boinc boinc      4096 Nov 24 05:01 pilot3
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc       532 Nov 24 20:59 boinc_task_state.xml
[2025-11-24 21:09:44] -rw------- 1 boinc boinc 913926318 Nov 24 21:06 HITS.47523449._005133.pool.root.1
[2025-11-24 21:09:44] -rw------- 1 boinc boinc      1040 Nov 24 21:07 memory_monitor_summary.json
[2025-11-24 21:09:44] -rw------- 1 boinc boinc   1516227 Nov 24 21:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:09:44] -rw------- 1 boinc boinc   1691030 Nov 24 21:07 log.47523449._005133.job.log.tgz.1
[2025-11-24 21:09:44] -rw------- 1 boinc boinc      8593 Nov 24 21:07 heartbeat.json
[2025-11-24 21:09:44] -rw------- 1 boinc boinc        95 Nov 24 21:08 pilot_heartbeat.json
[2025-11-24 21:09:44] -rw------- 1 boinc boinc      4836 Nov 24 21:08 pilotlog.txt
[2025-11-24 21:09:44] -rw------- 1 boinc boinc   7933305 Nov 24 21:08 log.47523449._005133.job.log.1
[2025-11-24 21:09:44] -rw------- 1 boinc boinc       353 Nov 24 21:08 output.list
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc       620 Nov 24 21:08 runtime_log
[2025-11-24 21:09:44] -rw------- 1 boinc boinc   9646080 Nov 24 21:08 result.tar.gz
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc      9223 Nov 24 21:08 runtime_log.err
[2025-11-24 21:09:44] -rw------- 1 boinc boinc       670 Nov 24 21:08 EHkLDmPnJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5uHKDm2GSJUm.diag
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc        28 Nov 24 21:09 wrapper_checkpoint.txt
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc      8192 Nov 24 21:09 boinc_mmap_file
[2025-11-24 21:09:44] -rw-r--r-- 1 boinc boinc     21122 Nov 24 21:09 stderr.txt
[2025-11-24 21:09:44] HITS file was successfully produced:
[2025-11-24 21:09:44] -rw------- 1 boinc boinc 913926318 Nov 24 21:06 shared/HITS.pool.root.1
[2025-11-24 21:09:44]  *** Contents of shared directory: ***
[2025-11-24 21:09:44] total 1300636
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc 407656346 Nov 24 05:01 ATLAS.root_0
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:01 start_atlas.sh
[2025-11-24 21:09:44] -rw-r--r-- 2 boinc boinc    590097 Nov 24 05:01 input.tar.gz
[2025-11-24 21:09:44] -rw------- 1 boinc boinc 913926318 Nov 24 21:06 HITS.pool.root.1
[2025-11-24 21:09:44] -rw------- 1 boinc boinc   9646080 Nov 24 21:08 result.tar.gz
21:09:45 (2523671): run_atlas exited; CPU time 231621.050603
21:09:45 (2523671): called boinc_finish(0)

</stderr_txt>
]]>

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