Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:14 (30908): wrapper (7.7.26015): starting
00:27:14 (30908): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:27:14] Arguments: --nthreads 8
[2025-11-24 00:27:14] Threads: 8
[2025-11-24 00:27:14] Checking for CVMFS
[2025-11-24 00:27:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:27:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:27:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:27:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:27:17] 2.11.2.0 7908 83995 117728 153226 1 84 19938041 25165825 4632 130560 3 25323007 99.899 13009401 2002 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 00:27:17] CVMFS is ok
[2025-11-24 00:27:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:27:17] Checking for apptainer binary...
[2025-11-24 00:27:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:27:17] Running /usr/bin/apptainer --version
[2025-11-24 00:27:17] apptainer version 1.3.2-1.el7
[2025-11-24 00:27:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:27:26] cg-vwn301.simple-grid.lan
[2025-11-24 00:27:26] apptainer works
[2025-11-24 00:27:26] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:27:26] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:27:26] Starting ATLAS job with PandaID=6892522234
[2025-11-24 00:27:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:59:19]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:59:19] 2025-11-24 19:58:21,911 | INFO     | time since job start (73640s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:23,922 | INFO     | time since job start (73642s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:24,121 | INFO     | monitor loop #4946: job 0:6892522234 is in state 'finished'
[2025-11-24 20:59:19] 2025-11-24 19:58:24,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:59:19] 2025-11-24 19:58:25,932 | INFO     | time since job start (73644s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:26,632 | INFO     | monitor loop #4947: job 0:6892522234 is in state 'finished'
[2025-11-24 20:59:19] 2025-11-24 19:58:26,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:59:19] 2025-11-24 19:58:27,939 | INFO     | time since job start (73646s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:29,141 | INFO     | monitor loop #4948: job 0:6892522234 is in state 'finished'
[2025-11-24 20:59:19] 2025-11-24 19:58:29,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:59:19] 2025-11-24 19:58:29,946 | INFO     | time since job start (73648s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:31,649 | INFO     | monitor loop #4949: job 0:6892522234 is in state 'finished'
[2025-11-24 20:59:19] 2025-11-24 19:58:31,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:59:19] 2025-11-24 19:58:31,953 | INFO     | time since job start (73650s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:33,713 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 20:59:19] 2025-11-24 19:58:33,715 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-24 20:59:19] 2025-11-24 19:58:33,716 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6892522234/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:59:19] 2025-11-24 19:58:33,717 | INFO     | extracted standard info from prmon json
[2025-11-24 20:59:19] 2025-11-24 19:58:33,717 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:59:19] 2025-11-24 19:58:33,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:59:19] 2025-11-24 19:58:33,754 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:59:19] 2025-11-24 19:58:33,757 | INFO     | sum of square deviations: 531811310443.7911
[2025-11-24 20:59:19] 2025-11-24 19:58:33,810 | INFO     | sum of deviations: 2278375186737.6875
[2025-11-24 20:59:19] 2025-11-24 19:58:33,811 | INFO     | mean x: 1763977694.0133667
[2025-11-24 20:59:19] 2025-11-24 19:58:33,811 | INFO     | mean y: 2797376.8320802003
[2025-11-24 20:59:19] 2025-11-24 19:58:33,811 | INFO     | intersect: -7554399939.345726
[2025-11-24 20:59:19] 2025-11-24 19:58:33,813 | INFO     | chi2: 30.950489055118094
[2025-11-24 20:59:19] 2025-11-24 19:58:33,814 | INFO     | sum of square deviations: 525175128063.63
[2025-11-24 20:59:19] 2025-11-24 19:58:33,868 | INFO     | sum of deviations: 2683853303308.749
[2025-11-24 20:59:19] 2025-11-24 19:58:33,868 | INFO     | mean x: 1763977541.5176175
[2025-11-24 20:59:19] 2025-11-24 19:58:33,868 | INFO     | mean y: 2806691.5838926174
[2025-11-24 20:59:19] 2025-11-24 19:58:33,869 | INFO     | intersect: -9011818523.47561
[2025-11-24 20:59:19] 2025-11-24 19:58:33,870 | INFO     | chi2: 27.333525118920157
[2025-11-24 20:59:19] 2025-11-24 19:58:33,870 | INFO     | current chi2=27.333525118920157 (change=11.686290093047242 %)
[2025-11-24 20:59:19] 2025-11-24 19:58:33,871 | INFO     | right removable region: 1191
[2025-11-24 20:59:19] 2025-11-24 19:58:33,872 | INFO     | sum of square deviations: 525174388133.63007
[2025-11-24 20:59:19] 2025-11-24 19:58:33,936 | INFO     | sum of deviations: 1782691799535.189
[2025-11-24 20:59:19] 2025-11-24 19:58:33,937 | INFO     | mean x: 1763977846.5176175
[2025-11-24 20:59:19] 2025-11-24 19:58:33,937 | INFO     | mean y: 2808765.9672818794
[2025-11-24 20:59:19] 2025-11-24 19:58:33,937 | INFO     | intersect: -5984971507.789234
[2025-11-24 20:59:19] 2025-11-24 19:58:33,939 | INFO     | chi2: 26.216203991366694
[2025-11-24 20:59:19] 2025-11-24 19:58:33,939 | INFO     | current chi2=26.216203991366694 (change=15.296317467941659 %)
[2025-11-24 20:59:19] 2025-11-24 19:58:33,939 | INFO     | left removable region: 10
[2025-11-24 20:59:19] 2025-11-24 19:58:33,941 | INFO     | sum of square deviations: 510768878527.1352
[2025-11-24 20:59:19] 2025-11-24 19:58:33,988 | INFO     | time since job start (73652s) is within the limit (172800.0s)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,005 | INFO     | sum of deviations: 1838004827806.9739
[2025-11-24 20:59:19] 2025-11-24 19:58:34,005 | INFO     | 73658s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 20:59:19] 2025-11-24 19:58:34,006 | INFO     | mean x: 1763977816.0270958
[2025-11-24 20:59:19] 2025-11-24 19:58:34,013 | INFO     | mean y: 2830235.313293819
[2025-11-24 20:59:19] 2025-11-24 19:58:34,013 | INFO     | intersect: -6344854360.019698
[2025-11-24 20:59:19] 2025-11-24 19:58:34,015 | INFO     | chi2: 18.29561635563436
[2025-11-24 20:59:19] 2025-11-24 19:58:34,015 | INFO     | current memory leak: 3.60 B/s (using 1181 data points, chi2=18.30)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,017 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,017 | INFO     | ..............................
[2025-11-24 20:59:19] 2025-11-24 19:58:34,017 | INFO     | . Timing measurements:
[2025-11-24 20:59:19] 2025-11-24 19:58:34,017 | INFO     | . get job = 0 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . initial setup = 6 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . payload setup = 163 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . stage-in = 0 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . payload execution = 73139 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . stage-out = 6 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | . log creation = 2 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,018 | INFO     | ..............................
[2025-11-24 20:59:19] 2025-11-24 19:58:34,388 | INFO     | 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | job summary report
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | --------------------------------------------------
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | PanDA job id: 6892522234
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | task id: 47493029
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | errors: (none)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | pilot state: finished 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | transexitcode: 0
[2025-11-24 20:59:19] 2025-11-24 19:58:34,389 | INFO     | exeerrorcode: 0
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | exeerrordiag: 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | exitcode: 0
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | exitmsg: OK
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | cpuconsumptiontime: 332296 s
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | nevents: 1000
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | neventsw: 0
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | pid: 8873
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | pgrp: 8873
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | corecount: 8
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | event service: False
[2025-11-24 20:59:19] 2025-11-24 19:58:34,390 | INFO     | sizes: {0: 2298621, 1: 2298820, 12: 2298820, 23: 2298848, 33: 2298876, 44: 2298932, 55: 2299088, 66: 2299116, 76: 2299144, 87: 2299200, 98: 2299228, 101: 2299798, 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,391 | INFO     | --------------------------------------------------
[2025-11-24 20:59:19] 2025-11-24 19:58:34,391 | INFO     | 
[2025-11-24 20:59:19] 2025-11-24 19:58:34,391 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-24 20:59:19] 2025-11-24 19:58:34,809 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,809 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:59:19] 2025-11-24 19:58:34,812 | INFO     | job 6892522234 has completed (purged errors)
[2025-11-24 20:59:19] 2025-11-24 19:58:34,812 | INFO     | overall cleanup function is called
[2025-11-24 20:59:19] 2025-11-24 19:58:35,833 | INFO     | --- collectZombieJob: --- 10, [8873]
[2025-11-24 20:59:19] 2025-11-24 19:58:35,834 | INFO     | zombie collector waiting for pid 8873
[2025-11-24 20:59:19] 2025-11-24 19:58:35,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:59:19] 2025-11-24 19:58:35,834 | INFO     | collected zombie processes
[2025-11-24 20:59:19] 2025-11-24 19:58:35,834 | INFO     | will attempt to kill all subprocesses of pid=8873
[2025-11-24 20:59:19] 2025-11-24 19:58:35,918 | INFO     | process IDs to be killed: [8873] (in reverse order)
[2025-11-24 20:59:19] 2025-11-24 19:58:37,088 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:59:19] 2025-11-24 19:58:37,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:59:19] 2025-11-24 19:58:37,090 | INFO     | did not find any defunct processes belonging to 8873
[2025-11-24 20:59:19] 2025-11-24 19:58:37,092 | INFO     | did not find any defunct processes belonging to 8873
[2025-11-24 20:59:19] 2025-11-24 19:58:37,163 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:59:19] 2025-11-24 19:58:37,163 | INFO     | ready for new job
[2025-11-24 20:59:19] 2025-11-24 19:58:37,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:59:19] 2025-11-24 19:58:37,168 | INFO     | ***************************************
[2025-11-24 20:59:19] 2025-11-24 19:58:37,168 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:59:19] 2025-11-24 19:58:37,168 | INFO     | ***************************************
[2025-11-24 20:59:19] 2025-11-24 19:58:37,168 | INFO     | 
[2025-11-24 20:59:19] 2025-11-24 19:58:37,175 | INFO     | pilot is running in a VM
[2025-11-24 20:59:19] 2025-11-24 19:58:37,175 | INFO     | architecture information:
[2025-11-24 20:59:19] 2025-11-24 19:58:37,194 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:59:19] 2025-11-24 19:58:37,516 | INFO     | cat /etc/os-release:
[2025-11-24 20:59:19] NAME="CentOS Linux"
[2025-11-24 20:59:19] VERSION="7 (Core)"
[2025-11-24 20:59:19] ID="centos"
[2025-11-24 20:59:19] ID_LIKE="rhel fedora"
[2025-11-24 20:59:19] VERSION_ID="7"
[2025-11-24 20:59:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:59:19] ANSI_COLOR="0;31"
[2025-11-24 20:59:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:59:19] HOME_URL="https://www.centos.org/"
[2025-11-24 20:59:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:59:19] 
[2025-11-24 20:59:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:59:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:59:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:59:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:59:19] 
[2025-11-24 20:59:19] 2025-11-24 19:58:37,516 | INFO     | ***************************************
[2025-11-24 20:59:19] 2025-11-24 19:58:38,020 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-24 20:59:19] 2025-11-24 19:58:38,423 | INFO     | sufficient remaining disk space (494059651072 B)
[2025-11-24 20:59:19] 2025-11-24 19:58:38,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:59:19] 2025-11-24 19:58:38,424 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:59:19] 2025-11-24 19:58:38,424 | INFO     | update_server=False
[2025-11-24 20:59:19] 2025-11-24 19:58:38,424 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:59:19] 2025-11-24 19:58:38,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:59:19] 2025-11-24 19:58:38,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:59:19] 2025-11-24 19:58:38,426 | INFO     | aborting loop
[2025-11-24 20:59:19] 2025-11-24 19:58:38,793 | INFO     | all job control threads have been joined
[2025-11-24 20:59:19] 2025-11-24 19:58:39,175 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:59:19] 2025-11-24 19:58:39,431 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,432 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,451 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,502 | INFO     | all data control threads have been joined
[2025-11-24 20:59:19] 2025-11-24 19:58:39,799 | INFO     | [job] control thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,910 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:39,926 | INFO     | all payload control threads have been joined
[2025-11-24 20:59:19] 2025-11-24 19:58:39,948 | INFO     | [job] validate thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,119 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,156 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,182 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,432 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,441 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,509 | INFO     | [data] control thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,931 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:40,933 | INFO     | [payload] control thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:58:41,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:59:19] 2025-11-24 19:58:45,801 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:59:19] 2025-11-24 19:59:07,131 | INFO     | PID=2307 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 20:59:19] 2025-11-24 19:59:07,131 | INFO     | .. there are 2 such processes running
[2025-11-24 20:59:19] 2025-11-24 19:59:07,132 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:59:19] 2025-11-24 19:59:07,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:59:19] 2025-11-24 19:59:07,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:59:19] 2025-11-24 19:59:09,029 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:59:19] 2025-11-24 19:59:10,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539590436672)>', '<ExcThread(monitor, started 140539131303680)>']
[2025-11-24 20:59:19] 2025-11-24 19:59:10,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:59:19] 2025-11-24 19:59:10,151 | INFO     | [monitor] control thread has ended
[2025-11-24 20:59:19] 2025-11-24 19:59:15,091 | INFO     | all workflow threads have been joined
[2025-11-24 20:59:19] 2025-11-24 19:59:15,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:59:19] 2025-11-24 19:59:15,092 | INFO     | traces error code: 0
[2025-11-24 20:59:19] 2025-11-24 19:59:15,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:59:19] 2025-11-24 19:59:15,635 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:59:19] 2025-11-24 19:59:15,751 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:59:19] 2025-11-24 19:59:15,853 [wrapper] pilotpid: 2307
[2025-11-24 20:59:19] 2025-11-24 19:59:15,973 [wrapper] Pilot exit status: 0
[2025-11-24 20:59:19] 2025-11-24 19:59:16,297 [wrapper] pandaids: 6892522234
[2025-11-24 20:59:19] 2025-11-24 19:59:17,010 [wrapper] cleanup supervisor_pilot 16800 2308
[2025-11-24 20:59:19] 2025-11-24 19:59:17,015 [wrapper] Test setup, not cleaning
[2025-11-24 20:59:19] 2025-11-24 19:59:17,150 [wrapper] apfmon messages muted
[2025-11-24 20:59:19] 2025-11-24 19:59:17,241 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:59:19] 2025-11-24 19:59:17,332 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:59:19]  *** Error codes and diagnostics ***
[2025-11-24 20:59:19]     "exeErrorCode": 0,
[2025-11-24 20:59:19]     "exeErrorDiag": "",
[2025-11-24 20:59:19]     "pilotErrorCode": 0,
[2025-11-24 20:59:19]     "pilotErrorDiag": "",
[2025-11-24 20:59:19]  *** Listing of results directory ***
[2025-11-24 20:59:19] total 1320492
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-24 20:59:19] -rwx------. 1 boinc boinc     36292 Nov 19 08:04 runpilot2-wrapper.sh
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc       100 Nov 24 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:59:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 00:27 run_atlas
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc       105 Nov 24 00:27 job.xml
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc      6391 Nov 24 00:27 init_data.xml
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc 409074517 Nov 24 00:27 EVNT.47493027._000031.pool.root.1
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc     15120 Nov 24 00:27 start_atlas.sh
[2025-11-24 20:59:19] drwxrwx--x. 2 boinc boinc        68 Nov 24 00:27 shared
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc    590096 Nov 24 00:27 input.tar.gz
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc         0 Nov 24 00:27 boinc_lockfile
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc      2771 Nov 24 00:27 pandaJob.out
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc    989786 Nov 24 00:30 agis_schedconf.cvmfs.json
[2025-11-24 20:59:19] drwx------. 5 boinc boinc      4096 Nov 24 00:31 pilot3
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc       533 Nov 24 20:26 boinc_task_state.xml
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc 915046144 Nov 24 20:54 HITS.47493029._000253.pool.root.1
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc      1030 Nov 24 20:56 memory_monitor_summary.json
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc   1516227 Nov 24 20:56 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc   2327243 Nov 24 20:56 log.47493029._000253.job.log.tgz.1
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc      7948 Nov 24 20:58 heartbeat.json
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc      8192 Nov 24 20:58 boinc_mmap_file
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc        29 Nov 24 20:58 wrapper_checkpoint.txt
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc        95 Nov 24 20:59 pilot_heartbeat.json
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc      4883 Nov 24 20:59 pilotlog.txt
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc   9757454 Nov 24 20:59 log.47493029._000253.job.log.1
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc       353 Nov 24 20:59 output.list
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc       620 Nov 24 20:59 runtime_log
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc  12103680 Nov 24 20:59 result.tar.gz
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc      8703 Nov 24 20:59 runtime_log.err
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc       661 Nov 24 20:59 2eoLDmMQrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5bGKDmCfMwdn.diag
[2025-11-24 20:59:19] -rw-r--r--. 1 boinc boinc     21441 Nov 24 20:59 stderr.txt
[2025-11-24 20:59:19] HITS file was successfully produced:
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc 915046144 Nov 24 20:54 shared/HITS.pool.root.1
[2025-11-24 20:59:19]  *** Contents of shared directory: ***
[2025-11-24 20:59:19] total 1305504
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc 409074517 Nov 24 00:27 ATLAS.root_0
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc     15120 Nov 24 00:27 start_atlas.sh
[2025-11-24 20:59:19] -rw-r--r--. 2 boinc boinc    590096 Nov 24 00:27 input.tar.gz
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc 915046144 Nov 24 20:54 HITS.pool.root.1
[2025-11-24 20:59:19] -rw-------. 1 boinc boinc  12103680 Nov 24 20:59 result.tar.gz
20:59:20 (30908): run_atlas exited; CPU time 332544.392240
20:59:20 (30908): called boinc_finish(0)

</stderr_txt>
]]>

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