Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:24:02 (11457): wrapper (7.7.26015): starting
16:24:02 (11457): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 16:24:02] Arguments: --nthreads 8
[2025-11-20 16:24:02] Threads: 8
[2025-11-20 16:24:02] Checking for CVMFS
[2025-11-20 16:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:24:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:24:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:24:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:24:02] 2.11.2.0 2918 134381 88592 153096 2 81 18227969 20275200 1 130560 0 50466314 99.932 6190900 36076 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://10.10.128.19:3128 1
[2025-11-20 16:24:02] CVMFS is ok
[2025-11-20 16:24:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:24:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:24:02] Further information can be found at the LHC@home message board.
[2025-11-20 16:24:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:24:02] Checking for apptainer binary...
[2025-11-20 16:24:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:24:02] Running /usr/bin/apptainer --version
[2025-11-20 16:24:03] apptainer version 1.3.2-1.el7
[2025-11-20 16:24:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:24:04] c-115-8.aglt2.org
[2025-11-20 16:24:04] apptainer works
[2025-11-20 16:24:04] Set ATHENA_PROC_NUMBER=8
[2025-11-20 16:24:04] Set ATHENA_CORE_NUMBER=8
[2025-11-20 16:24:04] Starting ATLAS job with PandaID=6893858277
[2025-11-20 16:24:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:28:08 (1661): wrapper (7.7.26015): starting
01:28:08 (1661): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 01:28:08] Arguments: --nthreads 8
[2025-11-21 01:28:08] Threads: 8
[2025-11-21 01:28:08] This job has been restarted, cleaning up previous attempt
[2025-11-21 01:28:08] Checking for CVMFS
[2025-11-21 01:28:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:28:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:28:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:28:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:28:09] 2.11.2.0 2918 134925 88468 153111 3 49 18836570 20275200 1 130560 0 50653594 99.932 6209586 34931 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 01:28:09] CVMFS is ok
[2025-11-21 01:28:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:28:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:28:09] Further information can be found at the LHC@home message board.
[2025-11-21 01:28:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:28:09] Checking for apptainer binary...
[2025-11-21 01:28:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:28:09] Running /usr/bin/apptainer --version
[2025-11-21 01:28:09] apptainer version 1.3.2-1.el7
[2025-11-21 01:28:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:28:11] c-115-8.aglt2.org
[2025-11-21 01:28:11] apptainer works
[2025-11-21 01:28:11] Set ATHENA_PROC_NUMBER=8
[2025-11-21 01:28:11] Set ATHENA_CORE_NUMBER=8
[2025-11-21 01:28:11] Starting ATLAS job with PandaID=6893858277
[2025-11-21 01:28:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 12:37:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 12:37:40] 2025-11-21 17:36:58,006 | INFO     | monitor loop #2953: job 0:6893858277 is in state 'finished'
[2025-11-21 12:37:40] 2025-11-21 17:36:58,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 12:37:40] 2025-11-21 17:36:58,871 | INFO     | time since job start (40110s) is within the limit (172800.0s)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,113 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 12:37:40] 2025-11-21 17:36:59,117 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1762.375
[2025-11-21 12:37:40] 2025-11-21 17:36:59,120 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893858277/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,121 | INFO     | extracted standard info from prmon json
[2025-11-21 12:37:40] 2025-11-21 17:36:59,121 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 12:37:40] 2025-11-21 17:36:59,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 12:37:40] 2025-11-21 17:36:59,132 | INFO     | fitting pss+swap vs Time
[2025-11-21 12:37:40] 2025-11-21 17:36:59,133 | INFO     | sum of square deviations: 87937202564.54176
[2025-11-21 12:37:40] 2025-11-21 17:36:59,141 | INFO     | sum of deviations: 625174965231.044
[2025-11-21 12:37:40] 2025-11-21 17:36:59,142 | INFO     | mean x: 1763726548.5509894
[2025-11-21 12:37:40] 2025-11-21 17:36:59,142 | INFO     | mean y: 3180560.1628614916
[2025-11-21 12:37:40] 2025-11-21 17:36:59,142 | INFO     | intersect: -12535740982.834253
[2025-11-21 12:37:40] 2025-11-21 17:36:59,143 | INFO     | chi2: 5.8590476894289925
[2025-11-21 12:37:40] 2025-11-21 17:36:59,143 | INFO     | sum of square deviations: 85944847708.01224
[2025-11-21 12:37:40] 2025-11-21 17:36:59,152 | INFO     | sum of deviations: 858194948070.601
[2025-11-21 12:37:40] 2025-11-21 17:36:59,153 | INFO     | mean x: 1763726396.0552146
[2025-11-21 12:37:40] 2025-11-21 17:36:59,153 | INFO     | mean y: 3198386.4555214723
[2025-11-21 12:37:40] 2025-11-21 17:36:59,154 | INFO     | intersect: -17608341144.28758
[2025-11-21 12:37:40] 2025-11-21 17:36:59,154 | INFO     | chi2: 2.784120307163181
[2025-11-21 12:37:40] 2025-11-21 17:36:59,154 | INFO     | current chi2=2.784120307163181 (change=52.48169233736832 %)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,155 | INFO     | sum of square deviations: 83982739823.69084
[2025-11-21 12:37:40] 2025-11-21 17:36:59,164 | INFO     | sum of deviations: 901231496740.3036
[2025-11-21 12:37:40] 2025-11-21 17:36:59,164 | INFO     | mean x: 1763726243.5564141
[2025-11-21 12:37:40] 2025-11-21 17:36:59,164 | INFO     | mean y: 3201716.854714065
[2025-11-21 12:37:40] 2025-11-21 17:36:59,165 | INFO     | intersect: -18923611645.718014
[2025-11-21 12:37:40] 2025-11-21 17:36:59,165 | INFO     | chi2: 2.520299802600861
[2025-11-21 12:37:40] 2025-11-21 17:36:59,165 | INFO     | current chi2=2.520299802600861 (change=9.475901737562989 %)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,166 | INFO     | right removable region: 646
[2025-11-21 12:37:40] 2025-11-21 17:36:59,166 | INFO     | sum of square deviations: 85944626888.0123
[2025-11-21 12:37:40] 2025-11-21 17:36:59,175 | INFO     | sum of deviations: 422623142017.5403
[2025-11-21 12:37:40] 2025-11-21 17:36:59,175 | INFO     | mean x: 1763726701.0552146
[2025-11-21 12:37:40] 2025-11-21 17:36:59,175 | INFO     | mean y: 3196032.4294478525
[2025-11-21 12:37:40] 2025-11-21 17:36:59,175 | INFO     | intersect: -8669733818.455208
[2025-11-21 12:37:40] 2025-11-21 17:36:59,176 | INFO     | chi2: 3.4732153214184085
[2025-11-21 12:37:40] 2025-11-21 17:36:59,176 | INFO     | current chi2=3.4732153214184085 (change=40.720480434305884 %)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,177 | INFO     | sum of square deviations: 83982377361.46025
[2025-11-21 12:37:40] 2025-11-21 17:36:59,184 | INFO     | sum of deviations: 384956591119.01855
[2025-11-21 12:37:40] 2025-11-21 17:36:59,185 | INFO     | mean x: 1763726853.5595055
[2025-11-21 12:37:40] 2025-11-21 17:36:59,185 | INFO     | mean y: 3198957.5579598146
[2025-11-21 12:37:40] 2025-11-21 17:36:59,185 | INFO     | intersect: -8081333756.836425
[2025-11-21 12:37:40] 2025-11-21 17:36:59,186 | INFO     | chi2: 3.4374773986385168
[2025-11-21 12:37:40] 2025-11-21 17:36:59,186 | INFO     | current chi2=3.4374773986385168 (change=1.0289578811744073 %)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,186 | INFO     | left removable region: 20
[2025-11-21 12:37:40] 2025-11-21 17:36:59,187 | INFO     | sum of square deviations: 76067444935.18219
[2025-11-21 12:37:40] 2025-11-21 17:36:59,194 | INFO     | sum of deviations: 615142193074.3838
[2025-11-21 12:37:40] 2025-11-21 17:36:59,194 | INFO     | mean x: 1763726823.0670927
[2025-11-21 12:37:40] 2025-11-21 17:36:59,194 | INFO     | mean y: 3224094.0623003193
[2025-11-21 12:37:40] 2025-11-21 17:36:59,195 | INFO     | intersect: -14259681500.441332
[2025-11-21 12:37:40] 2025-11-21 17:36:59,195 | INFO     | chi2: 0.05915268528359934
[2025-11-21 12:37:40] 2025-11-21 17:36:59,195 | INFO     | current memory leak: 8.09 B/s (using 626 data points, chi2=0.06)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | could have reported an average CPU frequency of 2390 MHz (25 samples)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | ..............................
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | . Timing measurements:
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | . get job = 0 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | . initial setup = 2 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,196 | INFO     | . payload setup = 9 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,197 | INFO     | . stage-in = 0 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,197 | INFO     | . payload execution = 40071 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,197 | INFO     | . stage-out = 3 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,197 | INFO     | . log creation = 0 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,197 | INFO     | ..............................
[2025-11-21 12:37:40] 2025-11-21 17:36:59,285 | INFO     | 
[2025-11-21 12:37:40] 2025-11-21 17:36:59,285 | INFO     | job summary report
[2025-11-21 12:37:40] 2025-11-21 17:36:59,287 | INFO     | --------------------------------------------------
[2025-11-21 12:37:40] 2025-11-21 17:36:59,288 | INFO     | PanDA job id: 6893858277
[2025-11-21 12:37:40] 2025-11-21 17:36:59,288 | INFO     | task id: 47523449
[2025-11-21 12:37:40] 2025-11-21 17:36:59,288 | INFO     | errors: (none)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | pilot state: finished 
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | transexitcode: 0
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | exeerrorcode: 0
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | exeerrordiag: 
[2025-11-21 12:37:40] 2025-11-21 17:36:59,289 | INFO     | exitcode: 0
[2025-11-21 12:37:40] 2025-11-21 17:36:59,290 | INFO     | exitmsg: OK
[2025-11-21 12:37:40] 2025-11-21 17:36:59,290 | INFO     | cpuconsumptiontime: 311739 s
[2025-11-21 12:37:40] 2025-11-21 17:36:59,290 | INFO     | nevents: 1000
[2025-11-21 12:37:40] 2025-11-21 17:36:59,290 | INFO     | neventsw: 0
[2025-11-21 12:37:40] 2025-11-21 17:36:59,290 | INFO     | pid: 11946
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | pgrp: 11946
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | corecount: 8
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | event service: False
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | sizes: {0: 2298806, 6: 2299068, 11: 2299096, 40083: 2342630, 40084: 2342629, 40087: 2351863, 40093: 2352117}
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | --------------------------------------------------
[2025-11-21 12:37:40] 2025-11-21 17:36:59,291 | INFO     | 
[2025-11-21 12:37:40] 2025-11-21 17:36:59,292 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 12:37:40] 2025-11-21 17:36:59,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,319 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,319 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,320 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,320 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,321 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 12:37:40] 2025-11-21 17:36:59,322 | INFO     | job 6893858277 has completed (purged errors)
[2025-11-21 12:37:40] 2025-11-21 17:36:59,322 | INFO     | overall cleanup function is called
[2025-11-21 12:37:40] 2025-11-21 17:37:00,331 | INFO     | --- collectZombieJob: --- 10, [11946]
[2025-11-21 12:37:40] 2025-11-21 17:37:00,332 | INFO     | zombie collector waiting for pid 11946
[2025-11-21 12:37:40] 2025-11-21 17:37:00,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 12:37:40] 2025-11-21 17:37:00,332 | INFO     | collected zombie processes
[2025-11-21 12:37:40] 2025-11-21 17:37:00,332 | INFO     | will attempt to kill all subprocesses of pid=11946
[2025-11-21 12:37:40] 2025-11-21 17:37:00,426 | INFO     | process IDs to be killed: [11946] (in reverse order)
[2025-11-21 12:37:40] 2025-11-21 17:37:00,486 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 12:37:40] 2025-11-21 17:37:00,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 12:37:40] 2025-11-21 17:37:00,492 | INFO     | did not find any defunct processes belonging to 11946
[2025-11-21 12:37:40] 2025-11-21 17:37:00,495 | INFO     | did not find any defunct processes belonging to 11946
[2025-11-21 12:37:40] 2025-11-21 17:37:00,498 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 12:37:40] 2025-11-21 17:37:00,499 | INFO     | ready for new job
[2025-11-21 12:37:40] 2025-11-21 17:37:00,499 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 12:37:40] 2025-11-21 17:37:00,503 | INFO     | ***************************************
[2025-11-21 12:37:40] 2025-11-21 17:37:00,504 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 12:37:40] 2025-11-21 17:37:00,504 | INFO     | ***************************************
[2025-11-21 12:37:40] 2025-11-21 17:37:00,504 | INFO     | 
[2025-11-21 12:37:40] 2025-11-21 17:37:00,505 | INFO     | architecture information:
[2025-11-21 12:37:40] 2025-11-21 17:37:00,506 | INFO     | executing command: cat /etc/os-release
[2025-11-21 12:37:40] 2025-11-21 17:37:00,526 | INFO     | cat /etc/os-release:
[2025-11-21 12:37:40] NAME="CentOS Linux"
[2025-11-21 12:37:40] VERSION="7 (Core)"
[2025-11-21 12:37:40] ID="centos"
[2025-11-21 12:37:40] ID_LIKE="rhel fedora"
[2025-11-21 12:37:40] VERSION_ID="7"
[2025-11-21 12:37:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 12:37:40] ANSI_COLOR="0;31"
[2025-11-21 12:37:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 12:37:40] HOME_URL="https://www.centos.org/"
[2025-11-21 12:37:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 12:37:40] 
[2025-11-21 12:37:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 12:37:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 12:37:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 12:37:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 12:37:40] 
[2025-11-21 12:37:40] 2025-11-21 17:37:00,527 | INFO     | ***************************************
[2025-11-21 12:37:40] 2025-11-21 17:37:01,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 12:37:40] 2025-11-21 17:37:01,047 | INFO     | sufficient remaining disk space (17058234368 B)
[2025-11-21 12:37:40] 2025-11-21 17:37:01,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 12:37:40] 2025-11-21 17:37:01,048 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 12:37:40] 2025-11-21 17:37:01,048 | INFO     | update_server=False
[2025-11-21 12:37:40] 2025-11-21 17:37:01,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 12:37:40] 2025-11-21 17:37:01,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:37:40] 2025-11-21 17:37:01,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 12:37:40] 2025-11-21 17:37:01,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 12:37:40] 2025-11-21 17:37:01,515 | INFO     | aborting loop
[2025-11-21 12:37:40] 2025-11-21 17:37:01,569 | INFO     | all payload control threads have been joined
[2025-11-21 12:37:40] 2025-11-21 17:37:01,964 | INFO     | all job control threads have been joined
[2025-11-21 12:37:40] 2025-11-21 17:37:01,999 | INFO     | all data control threads have been joined
[2025-11-21 12:37:40] 2025-11-21 17:37:02,054 | INFO     | [job] retrieve thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,055 | INFO     | [job] queue monitor thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,075 | INFO     | [data] copytool_in thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,159 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,243 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,521 | INFO     | [job] job monitor thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,575 | INFO     | [payload] control thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,662 | INFO     | [job] validate thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,860 | INFO     | [payload] failed_post thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:02,966 | INFO     | [job] control thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:03,005 | INFO     | [data] control thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:03,052 | INFO     | [data] copytool_out thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:03,480 | INFO     | [payload] validate_post thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:03,517 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:03,618 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 12:37:40] 2025-11-21 17:37:07,625 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:11,604 | INFO     | job.realtimelogging is not enabled
[2025-11-21 12:37:40] 2025-11-21 17:37:12,610 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 12:37:40] 2025-11-21 17:37:32,050 | INFO     | PID=5532 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 12:37:40] 2025-11-21 17:37:32,050 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 12:37:40] 2025-11-21 17:37:32,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 12:37:40] 2025-11-21 17:37:32,051 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 12:37:40] 2025-11-21 17:37:34,213 | INFO     | [monitor] cgroup control has ended
[2025-11-21 12:37:40] 2025-11-21 17:37:34,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944246363968)>', '<ExcThread(monitor, started 139943405917952)>']
[2025-11-21 12:37:40] 2025-11-21 17:37:35,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 12:37:40] 2025-11-21 17:37:35,067 | INFO     | [monitor] control thread has ended
[2025-11-21 12:37:40] 2025-11-21 17:37:40,011 | INFO     | all workflow threads have been joined
[2025-11-21 12:37:40] 2025-11-21 17:37:40,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 12:37:40] 2025-11-21 17:37:40,013 | INFO     | traces error code: 0
[2025-11-21 12:37:40] 2025-11-21 17:37:40,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 12:37:40] 2025-11-21 17:37:40,127 [wrapper] ==== pilot stdout END ====
[2025-11-21 12:37:40] 2025-11-21 17:37:40,131 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 12:37:40] 2025-11-21 17:37:40,135 [wrapper] pilotpid: 5532
[2025-11-21 12:37:40] 2025-11-21 17:37:40,140 [wrapper] Pilot exit status: 0
[2025-11-21 12:37:40] 2025-11-21 17:37:40,156 [wrapper] pandaids: 6893858277 6893858277
[2025-11-21 12:37:40] 2025-11-21 17:37:40,201 [wrapper] cleanup supervisor_pilot 26089 5533
[2025-11-21 12:37:40] 2025-11-21 17:37:40,206 [wrapper] Test setup, not cleaning
[2025-11-21 12:37:40] 2025-11-21 17:37:40,211 [wrapper] apfmon messages muted
[2025-11-21 12:37:40] 2025-11-21 17:37:40,216 [wrapper] ==== wrapper stdout END ====
[2025-11-21 12:37:40] 2025-11-21 17:37:40,221 [wrapper] ==== wrapper stderr END ====
[2025-11-21 12:37:40]  *** Error codes and diagnostics ***
[2025-11-21 12:37:40]     "exeErrorCode": 0,
[2025-11-21 12:37:40]     "exeErrorDiag": "",
[2025-11-21 12:37:40]     "pilotErrorCode": 0,
[2025-11-21 12:37:40]     "pilotErrorDiag": "",
[2025-11-21 12:37:40]  *** Listing of results directory ***
[2025-11-21 12:37:40] total 1718088
[2025-11-21 12:37:40] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 08:18 queuedata.json
[2025-11-21 12:37:40] -rwx------ 1 boincer umatlas     36292 Nov 20 08:18 runpilot2-wrapper.sh
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas       100 Nov 20 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 12:37:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 16:23 run_atlas
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas       105 Nov 20 16:23 job.xml
[2025-11-21 12:37:40] -rw-r--r-- 3 boincer umatlas 411353069 Nov 20 16:24 EVNT.47493127._000510.pool.root.1
[2025-11-21 12:37:40] -rw-r--r-- 3 boincer umatlas 411353069 Nov 20 16:24 ATLAS.root_0
[2025-11-21 12:37:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 16:24 start_atlas.sh
[2025-11-21 12:37:40] drwxrwx--x 2 boincer umatlas      4096 Nov 20 16:24 shared
[2025-11-21 12:37:40] -rw-r--r-- 2 boincer umatlas    590098 Nov 20 16:24 input.tar.gz
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas         0 Nov 20 16:24 boinc_lockfile
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas      2785 Nov 21 01:28 pandaJob.out
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas        57 Nov 21 01:28 setup.sh.local
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas    989817 Nov 21 01:28 agis_schedconf.cvmfs.json
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas       532 Nov 21 12:28 boinc_task_state.xml
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas 917824812 Nov 21 12:36 HITS.47523449._005096.pool.root.1
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas      1061 Nov 21 12:36 memory_monitor_summary.json
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas        96 Nov 21 12:36 pilot_heartbeat.json
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas   1526164 Nov 21 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas   1908902 Nov 21 12:36 log.47523449._005096.job.log.tgz.1
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas      8658 Nov 21 12:36 heartbeat.json
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas      5910 Nov 21 12:37 init_data.xml
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 12:37 boinc_mmap_file
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas        29 Nov 21 12:37 wrapper_checkpoint.txt
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas      4817 Nov 21 12:37 pilotlog.txt
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas   5525015 Nov 21 12:37 log.47523449._005096.job.log.1
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas       353 Nov 21 12:37 output.list
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas       620 Nov 21 12:37 runtime_log
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas   7454720 Nov 21 12:37 result.tar.gz
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas      9423 Nov 21 12:37 runtime_log.err
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas       792 Nov 21 12:37 GoRMDmajJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjuHKDmzjewUm.diag
[2025-11-21 12:37:40] -rw-r--r-- 1 boincer umatlas     23419 Nov 21 12:37 stderr.txt
[2025-11-21 12:37:40] HITS file was successfully produced:
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas 917824812 Nov 21 12:36 shared/HITS.pool.root.1
[2025-11-21 12:37:40]  *** Contents of shared directory: ***
[2025-11-21 12:37:40] total 1305908
[2025-11-21 12:37:40] -rw-r--r-- 3 boincer umatlas 411353069 Nov 20 16:24 ATLAS.root_0
[2025-11-21 12:37:40] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 16:24 start_atlas.sh
[2025-11-21 12:37:40] -rw-r--r-- 2 boincer umatlas    590098 Nov 20 16:24 input.tar.gz
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas 917824812 Nov 21 12:36 HITS.pool.root.1
[2025-11-21 12:37:40] -rw------- 1 boincer umatlas   7454720 Nov 21 12:37 result.tar.gz
12:37:41 (1661): run_atlas exited; CPU time 309716.420047
12:37:41 (1661): called boinc_finish(0)

</stderr_txt>
]]>

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