Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:27:27 (1706748): wrapper (7.7.26015): starting
17:27:27 (1706748): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:27:27] Arguments: --nthreads 8
[2025-11-20 17:27:27] Threads: 8
[2025-11-20 17:27:27] Checking for CVMFS
[2025-11-20 17:27:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:27:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:27:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:27:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:27:28] 2.13.2.0 7153 27795 156336 153098 1 207 35638677 40960000 17716 16776704 0 60103792 99.499 70212727 37418 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 17:27:28] CVMFS is ok
[2025-11-20 17:27:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:27:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:27:28] Further information can be found at the LHC@home message board.
[2025-11-20 17:27:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:27:28] Checking for apptainer binary...
[2025-11-20 17:27:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:27:28] Running /usr/bin/apptainer --version
[2025-11-20 17:27:28] apptainer version 1.4.4-1.el9
[2025-11-20 17:27:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:27:28] c-212-15.aglt2.org
[2025-11-20 17:27:28] apptainer works
[2025-11-20 17:27:28] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:27:28] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:27:28] Starting ATLAS job with PandaID=6893842794
[2025-11-20 17:27:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:47 (82836): wrapper (7.7.26015): starting
00:20:47 (82836): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:20:47] Arguments: --nthreads 8
[2025-11-21 00:20:47] Threads: 8
[2025-11-21 00:20:47] This job has been restarted, cleaning up previous attempt
[2025-11-21 00:20:47] Checking for CVMFS
[2025-11-21 00:20:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:20:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:20:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:20:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:20:48] 2.13.2.0 7153 28208 166276 153110 0 107 25905730 40960000 9678 16776704 0 62201409 99.511 74012126 38620 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:20:48] CVMFS is ok
[2025-11-21 00:20:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:20:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:20:48] Further information can be found at the LHC@home message board.
[2025-11-21 00:20:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:20:48] Checking for apptainer binary...
[2025-11-21 00:20:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:20:48] Running /usr/bin/apptainer --version
[2025-11-21 00:20:48] apptainer version 1.4.4-1.el9
[2025-11-21 00:20:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:20:48] c-212-15.aglt2.org
[2025-11-21 00:20:48] apptainer works
[2025-11-21 00:20:48] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:20:48] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:20:48] Starting ATLAS job with PandaID=6893842794
[2025-11-21 00:20:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:56:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:56:52] 2025-11-21 21:55:59,377 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:56:52] 2025-11-21 21:55:59,872 | INFO     | PID=124509 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:56:52] 2025-11-21 21:55:59,872 | INFO     | .. there are 55 such processes running
[2025-11-21 16:56:52] 2025-11-21 21:56:00,233 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 16:56:52] 2025-11-21 21:56:00,271 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3259.8834999999995
[2025-11-21 16:56:52] 2025-11-21 21:56:00,288 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893842794/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,288 | INFO     | extracted standard info from prmon json
[2025-11-21 16:56:52] 2025-11-21 21:56:00,289 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:56:52] 2025-11-21 21:56:00,289 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:56:52] 2025-11-21 21:56:00,301 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:56:52] 2025-11-21 21:56:00,302 | INFO     | sum of square deviations: 290033255579.83356
[2025-11-21 16:56:52] 2025-11-21 21:56:00,321 | INFO     | sum of deviations: 1686924043751.9966
[2025-11-21 16:56:52] 2025-11-21 21:56:00,321 | INFO     | mean x: 1763732292.8333333
[2025-11-21 16:56:52] 2025-11-21 21:56:00,321 | INFO     | mean y: 2890416.6687116562
[2025-11-21 16:56:52] 2025-11-21 21:56:00,322 | INFO     | intersect: -10255527727.741013
[2025-11-21 16:56:52] 2025-11-21 21:56:00,322 | INFO     | chi2: 7.147422917221679
[2025-11-21 16:56:52] 2025-11-21 21:56:00,323 | INFO     | sum of square deviations: 285609005745.7473
[2025-11-21 16:56:52] 2025-11-21 21:56:00,342 | INFO     | sum of deviations: 2034547025520.8628
[2025-11-21 16:56:52] 2025-11-21 21:56:00,343 | INFO     | mean x: 1763732140.3658788
[2025-11-21 16:56:52] 2025-11-21 21:56:00,343 | INFO     | mean y: 2902399.4357656734
[2025-11-21 16:56:52] 2025-11-21 21:56:00,343 | INFO     | intersect: -12561113117.607761
[2025-11-21 16:56:52] 2025-11-21 21:56:00,344 | INFO     | chi2: 3.645033038813417
[2025-11-21 16:56:52] 2025-11-21 21:56:00,344 | INFO     | current chi2=3.645033038813417 (change=49.002135720404496 %)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,345 | INFO     | sum of square deviations: 281229834914.4617
[2025-11-21 16:56:52] 2025-11-21 21:56:00,366 | INFO     | sum of deviations: 2224851379432.396
[2025-11-21 16:56:52] 2025-11-21 21:56:00,366 | INFO     | mean x: 1763731987.895661
[2025-11-21 16:56:52] 2025-11-21 21:56:00,366 | INFO     | mean y: 2909014.736570248
[2025-11-21 16:56:52] 2025-11-21 21:56:00,366 | INFO     | intersect: -13950239119.110012
[2025-11-21 16:56:52] 2025-11-21 21:56:00,367 | INFO     | chi2: 2.1458023760530756
[2025-11-21 16:56:52] 2025-11-21 21:56:00,367 | INFO     | current chi2=2.1458023760530756 (change=41.130783913234225 %)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,368 | INFO     | sum of square deviations: 276894801476.97974
[2025-11-21 16:56:52] 2025-11-21 21:56:00,384 | INFO     | sum of deviations: 2213515838131.7314
[2025-11-21 16:56:52] 2025-11-21 21:56:00,385 | INFO     | mean x: 1763731835.4101765
[2025-11-21 16:56:52] 2025-11-21 21:56:00,385 | INFO     | mean y: 2908613.5171339563
[2025-11-21 16:56:52] 2025-11-21 21:56:00,385 | INFO     | intersect: -14096483397.719833
[2025-11-21 16:56:52] 2025-11-21 21:56:00,386 | INFO     | chi2: 2.106784161609912
[2025-11-21 16:56:52] 2025-11-21 21:56:00,386 | INFO     | current chi2=2.106784161609912 (change=1.8183507893645174 %)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,386 | INFO     | right removable region: 962
[2025-11-21 16:56:52] 2025-11-21 21:56:00,387 | INFO     | sum of square deviations: 285605286953.4771
[2025-11-21 16:56:52] 2025-11-21 21:56:00,403 | INFO     | sum of deviations: 1454585000425.4802
[2025-11-21 16:56:52] 2025-11-21 21:56:00,404 | INFO     | mean x: 1763732445.364851
[2025-11-21 16:56:52] 2025-11-21 21:56:00,404 | INFO     | mean y: 2898407.4409044194
[2025-11-21 16:56:52] 2025-11-21 21:56:00,404 | INFO     | intersect: -8979774102.432364
[2025-11-21 16:56:52] 2025-11-21 21:56:00,405 | INFO     | chi2: 5.360875664376161
[2025-11-21 16:56:52] 2025-11-21 21:56:00,405 | INFO     | current chi2=5.360875664376161 (change=24.995684088328414 %)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,405 | INFO     | left removable region: 10
[2025-11-21 16:56:52] 2025-11-21 21:56:00,406 | INFO     | sum of square deviations: 267510039587.29022
[2025-11-21 16:56:52] 2025-11-21 21:56:00,423 | INFO     | sum of deviations: 1894201818505.1282
[2025-11-21 16:56:52] 2025-11-21 21:56:00,423 | INFO     | mean x: 1763732109.9726892
[2025-11-21 16:56:52] 2025-11-21 21:56:00,423 | INFO     | mean y: 2919604.081932773
[2025-11-21 16:56:52] 2025-11-21 21:56:00,423 | INFO     | intersect: -12485825024.793985
[2025-11-21 16:56:52] 2025-11-21 21:56:00,424 | INFO     | chi2: 0.20890123300721794
[2025-11-21 16:56:52] 2025-11-21 21:56:00,424 | INFO     | current memory leak: 7.08 B/s (using 952 data points, chi2=0.21)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | could have reported an average CPU frequency of 3215 MHz (36 samples)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | ..............................
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . Timing measurements:
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . get job = 0 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . initial setup = 0 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . payload setup = 6 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . stage-in = 0 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . payload execution = 59658 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . stage-out = 3 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,425 | INFO     | . log creation = 0 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,426 | INFO     | ..............................
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | 
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | job summary report
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | --------------------------------------------------
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | PanDA job id: 6893842794
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | task id: 47523449
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | errors: (none)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:56:52] 2025-11-21 21:56:00,497 | INFO     | pilot state: finished 
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | transexitcode: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | exeerrorcode: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | exeerrordiag: 
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | exitcode: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | exitmsg: OK
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | cpuconsumptiontime: 199001 s
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | nevents: 1000
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | neventsw: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | pid: 193788
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | pgrp: 193788
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | corecount: 8
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | event service: False
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | sizes: {0: 2297979, 1: 2298835, 5: 2299097, 11: 2299153, 59669: 2351252, 59673: 2360430, 59685: 2360620}
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | --------------------------------------------------
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | 
[2025-11-21 16:56:52] 2025-11-21 21:56:00,498 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:56:52] 2025-11-21 21:56:00,521 | INFO     | job 6893842794 has completed (purged errors)
[2025-11-21 16:56:52] 2025-11-21 21:56:00,521 | INFO     | overall cleanup function is called
[2025-11-21 16:56:52] 2025-11-21 21:56:01,538 | INFO     | --- collectZombieJob: --- 10, [193788]
[2025-11-21 16:56:52] 2025-11-21 21:56:01,539 | INFO     | zombie collector waiting for pid 193788
[2025-11-21 16:56:52] 2025-11-21 21:56:01,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:56:52] 2025-11-21 21:56:01,540 | INFO     | collected zombie processes
[2025-11-21 16:56:52] 2025-11-21 21:56:01,540 | INFO     | will attempt to kill all subprocesses of pid=193788
[2025-11-21 16:56:52] 2025-11-21 21:56:02,147 | INFO     | process IDs to be killed: [193788] (in reverse order)
[2025-11-21 16:56:52] 2025-11-21 21:56:02,356 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:56:52] 2025-11-21 21:56:02,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:56:52] 2025-11-21 21:56:02,401 | INFO     | did not find any defunct processes belonging to 193788
[2025-11-21 16:56:52] 2025-11-21 21:56:02,425 | INFO     | did not find any defunct processes belonging to 193788
[2025-11-21 16:56:52] 2025-11-21 21:56:02,426 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:56:52] 2025-11-21 21:56:02,427 | INFO     | ready for new job
[2025-11-21 16:56:52] 2025-11-21 21:56:02,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:56:52] 2025-11-21 21:56:02,430 | INFO     | ***************************************
[2025-11-21 16:56:52] 2025-11-21 21:56:02,431 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:56:52] 2025-11-21 21:56:02,431 | INFO     | ***************************************
[2025-11-21 16:56:52] 2025-11-21 21:56:02,431 | INFO     | 
[2025-11-21 16:56:52] 2025-11-21 21:56:02,436 | INFO     | architecture information:
[2025-11-21 16:56:52] 2025-11-21 21:56:02,441 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:56:52] 2025-11-21 21:56:02,495 | INFO     | cat /etc/os-release:
[2025-11-21 16:56:52] NAME="CentOS Linux"
[2025-11-21 16:56:52] VERSION="7 (Core)"
[2025-11-21 16:56:52] ID="centos"
[2025-11-21 16:56:52] ID_LIKE="rhel fedora"
[2025-11-21 16:56:52] VERSION_ID="7"
[2025-11-21 16:56:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:56:52] ANSI_COLOR="0;31"
[2025-11-21 16:56:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:56:52] HOME_URL="https://www.centos.org/"
[2025-11-21 16:56:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:56:52] 
[2025-11-21 16:56:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:56:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:56:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:56:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:56:52] 
[2025-11-21 16:56:52] 2025-11-21 21:56:02,496 | INFO     | ***************************************
[2025-11-21 16:56:52] 2025-11-21 21:56:02,999 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 16:56:52] 2025-11-21 21:56:03,035 | INFO     | sufficient remaining disk space (117577875456 B)
[2025-11-21 16:56:52] 2025-11-21 21:56:03,035 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:56:52] 2025-11-21 21:56:03,036 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:56:52] 2025-11-21 21:56:03,036 | INFO     | update_server=False
[2025-11-21 16:56:52] 2025-11-21 21:56:03,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:56:52] 2025-11-21 21:56:03,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:56:52] 2025-11-21 21:56:03,037 | INFO     | aborting loop
[2025-11-21 16:56:52] 2025-11-21 21:56:03,142 | INFO     | all data control threads have been joined
[2025-11-21 16:56:52] 2025-11-21 21:56:03,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:56:52] 2025-11-21 21:56:03,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:56:52] 2025-11-21 21:56:04,044 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,047 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,049 | INFO     | all payload control threads have been joined
[2025-11-21 16:56:52] 2025-11-21 21:56:04,148 | INFO     | [data] control thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,214 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,325 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,337 | INFO     | all job control threads have been joined
[2025-11-21 16:56:52] 2025-11-21 21:56:04,817 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,830 | INFO     | [job] validate thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,914 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:04,916 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:05,055 | INFO     | [payload] control thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:05,343 | INFO     | [job] control thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:05,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:05,476 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:05,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:56:52] 2025-11-21 21:56:05,583 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:06,517 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:07,192 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:56:52] 2025-11-21 21:56:32,709 | INFO     | PID=124509 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 16:56:52] 2025-11-21 21:56:32,711 | INFO     | .. there are 55 such processes running
[2025-11-21 16:56:52] 2025-11-21 21:56:32,711 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:56:52] 2025-11-21 21:56:32,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:56:52] 2025-11-21 21:56:32,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:56:52] 2025-11-21 21:56:45,651 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:56:52] 2025-11-21 21:56:46,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286696347456)>', '<ExcThread(monitor, started 140286206387968)>']
[2025-11-21 16:56:52] 2025-11-21 21:56:46,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:56:52] 2025-11-21 21:56:46,800 | INFO     | [monitor] control thread has ended
[2025-11-21 16:56:52] 2025-11-21 21:56:51,504 | INFO     | all workflow threads have been joined
[2025-11-21 16:56:52] 2025-11-21 21:56:51,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:56:52] 2025-11-21 21:56:51,504 | INFO     | traces error code: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:51,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:56:52] 2025-11-21 21:56:51,636 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:56:52] 2025-11-21 21:56:51,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:56:52] 2025-11-21 21:56:51,641 [wrapper] pilotpid: 124509
[2025-11-21 16:56:52] 2025-11-21 21:56:51,643 [wrapper] Pilot exit status: 0
[2025-11-21 16:56:52] 2025-11-21 21:56:51,663 [wrapper] pandaids: 6893842794 6893842794
[2025-11-21 16:56:52] 2025-11-21 21:56:51,816 [wrapper] cleanup supervisor_pilot 3806123 124510
[2025-11-21 16:56:52] 2025-11-21 21:56:51,824 [wrapper] Test setup, not cleaning
[2025-11-21 16:56:52] 2025-11-21 21:56:51,828 [wrapper] apfmon messages muted
[2025-11-21 16:56:52] 2025-11-21 21:56:51,830 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:56:52] 2025-11-21 21:56:51,833 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:56:52]  *** Error codes and diagnostics ***
[2025-11-21 16:56:52]     "exeErrorCode": 0,
[2025-11-21 16:56:52]     "exeErrorDiag": "",
[2025-11-21 16:56:52]     "pilotErrorCode": 0,
[2025-11-21 16:56:52]     "pilotErrorDiag": "",
[2025-11-21 16:56:52]  *** Listing of results directory ***
[2025-11-21 16:56:52] total 1729204
[2025-11-21 16:56:52] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 16:56:52] -rwx------. 1 boincer umatlas     36292 Nov 20 05:21 runpilot2-wrapper.sh
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:23 queuedata.json
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas       100 Nov 20 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:56:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 17:27 run_atlas
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas       105 Nov 20 17:27 job.xml
[2025-11-21 16:56:52] -rw-r--r--. 3 boincer umatlas 407389250 Nov 20 17:27 EVNT.47493127._000199.pool.root.1
[2025-11-21 16:56:52] -rw-r--r--. 3 boincer umatlas 407389250 Nov 20 17:27 ATLAS.root_0
[2025-11-21 16:56:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 17:27 start_atlas.sh
[2025-11-21 16:56:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 17:27 shared
[2025-11-21 16:56:52] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 17:27 input.tar.gz
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas         0 Nov 20 17:27 boinc_lockfile
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 00:20 pandaJob.out
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas        57 Nov 21 00:20 setup.sh.local
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas    989817 Nov 21 00:20 agis_schedconf.cvmfs.json
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas       533 Nov 21 16:43 boinc_task_state.xml
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas 933208530 Nov 21 16:55 HITS.47523449._001986.pool.root.1
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas        96 Nov 21 16:55 pilot_heartbeat.json
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas      1062 Nov 21 16:55 memory_monitor_summary.json
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas   1526164 Nov 21 16:55 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas   2092960 Nov 21 16:55 log.47523449._001986.job.log.tgz.1
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas      8604 Nov 21 16:56 heartbeat.json
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas      6947 Nov 21 16:56 init_data.xml
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 16:56 boinc_mmap_file
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas        29 Nov 21 16:56 wrapper_checkpoint.txt
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas      4824 Nov 21 16:56 pilotlog.txt
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas   7297573 Nov 21 16:56 log.47523449._001986.job.log.1
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas       353 Nov 21 16:56 output.list
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas       620 Nov 21 16:56 runtime_log
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas   9410560 Nov 21 16:56 result.tar.gz
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas       789 Nov 21 16:56 ZkbNDmqxGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEOHKDm9eUCim.diag
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas      9428 Nov 21 16:56 runtime_log.err
[2025-11-21 16:56:52] -rw-r--r--. 1 boincer umatlas     23562 Nov 21 16:56 stderr.txt
[2025-11-21 16:56:52] HITS file was successfully produced:
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas 933208530 Nov 21 16:55 shared/HITS.pool.root.1
[2025-11-21 16:56:52]  *** Contents of shared directory: ***
[2025-11-21 16:56:52] total 1318980
[2025-11-21 16:56:52] -rw-r--r--. 3 boincer umatlas 407389250 Nov 20 17:27 ATLAS.root_0
[2025-11-21 16:56:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 17:27 start_atlas.sh
[2025-11-21 16:56:52] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 17:27 input.tar.gz
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas 933208530 Nov 21 16:55 HITS.pool.root.1
[2025-11-21 16:56:52] -rw-------. 1 boincer umatlas   9410560 Nov 21 16:56 result.tar.gz
16:56:53 (82836): run_atlas exited; CPU time 200181.608864
16:56:53 (82836): called boinc_finish(0)

</stderr_txt>
]]>

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