Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:09:14 (3568053): wrapper (7.7.26015): starting
03:09:14 (3568053): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 03:09:14] Arguments: --nthreads 3
[2025-11-24 03:09:14] Threads: 3
[2025-11-24 03:09:14] Checking for CVMFS
[2025-11-24 03:09:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:09:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:09:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:09:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:09:14] 2.9.2.0 3434409 981 62264 153228 3 81 30217034 36864000 0 130560 0 364848 99.981 34286 24420 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 03:09:14] CVMFS is ok
[2025-11-24 03:09:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:09:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:09:14] Further information can be found at the LHC@home message board.
[2025-11-24 03:09:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:09:14] Checking for apptainer binary...
[2025-11-24 03:09:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:09:14] Running /usr/bin/apptainer --version
[2025-11-24 03:09:14] apptainer version 1.4.1-1.1
[2025-11-24 03:09:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:09:14] itA179
[2025-11-24 03:09:14] apptainer works
[2025-11-24 03:09:14] Set ATHENA_PROC_NUMBER=3
[2025-11-24 03:09:14] Set ATHENA_CORE_NUMBER=3
[2025-11-24 03:09:14] Starting ATLAS job with PandaID=6893857674
[2025-11-24 03:09:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:55:39 (3609192): wrapper (7.7.26015): starting
07:55:39 (3609192): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 07:55:39] Arguments: --nthreads 3
[2025-11-24 07:55:39] Threads: 3
[2025-11-24 07:55:39] This job has been restarted, cleaning up previous attempt
[2025-11-24 07:55:39] Checking for CVMFS
[2025-11-24 07:55:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:55:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:55:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:55:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:55:41] 2.9.2.0 3609318 0 29988 153236 3 1 30250583 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 07:55:41] CVMFS is ok
[2025-11-24 07:55:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:55:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 07:55:41] Further information can be found at the LHC@home message board.
[2025-11-24 07:55:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:55:41] Checking for apptainer binary...
[2025-11-24 07:55:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 07:55:41] Running /usr/bin/apptainer --version
[2025-11-24 07:55:41] apptainer version 1.4.1-1.1
[2025-11-24 07:55:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:55:41] itA179
[2025-11-24 07:55:41] apptainer works
[2025-11-24 07:55:41] Set ATHENA_PROC_NUMBER=3
[2025-11-24 07:55:41] Set ATHENA_CORE_NUMBER=3
[2025-11-24 07:55:41] Starting ATLAS job with PandaID=6893857674
[2025-11-24 07:55:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:56:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:56:55] 2025-11-24 14:56:21,817 | INFO     | time since job start (28832s) is within the limit (172800.0s)
[2025-11-24 15:56:55] 2025-11-24 14:56:22,273 | INFO     | monitor loop #2196: job 0:6893857674 is in state 'finished'
[2025-11-24 15:56:55] 2025-11-24 14:56:22,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,350 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 15:56:55] 2025-11-24 14:56:23,351 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3490.5929999999994
[2025-11-24 15:56:55] 2025-11-24 14:56:23,352 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893857674/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,352 | INFO     | extracted standard info from prmon json
[2025-11-24 15:56:55] 2025-11-24 14:56:23,352 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:56:55] 2025-11-24 14:56:23,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:56:55] 2025-11-24 14:56:23,355 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:56:55] 2025-11-24 14:56:23,355 | INFO     | sum of square deviations: 32814055252.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | sum of deviations: 169853143726.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | mean x: 1763981764.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | mean y: 2199286.4714587736
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | intersect: -9128578539.974527
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | chi2: 4.124576968124935
[2025-11-24 15:56:55] 2025-11-24 14:56:23,357 | INFO     | sum of square deviations: 31784398737.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,359 | INFO     | sum of deviations: 244015441235.00003
[2025-11-24 15:56:55] 2025-11-24 14:56:23,359 | INFO     | mean x: 1763981611.5
[2025-11-24 15:56:55] 2025-11-24 14:56:23,359 | INFO     | mean y: 2210223.393162393
[2025-11-24 15:56:55] 2025-11-24 14:56:23,359 | INFO     | intersect: -13540243570.44023
[2025-11-24 15:56:55] 2025-11-24 14:56:23,359 | INFO     | chi2: 2.279935995915559
[2025-11-24 15:56:55] 2025-11-24 14:56:23,360 | INFO     | current chi2=2.279935995915559 (change=44.72315552515836 %)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,360 | INFO     | sum of square deviations: 30776510072.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,361 | INFO     | sum of deviations: 240457723656.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,361 | INFO     | mean x: 1763981459.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,361 | INFO     | mean y: 2209685.1079913606
[2025-11-24 15:56:55] 2025-11-24 14:56:23,362 | INFO     | intersect: -13779826199.084955
[2025-11-24 15:56:55] 2025-11-24 14:56:23,362 | INFO     | chi2: 2.2785626236584418
[2025-11-24 15:56:55] 2025-11-24 14:56:23,362 | INFO     | current chi2=2.2785626236584418 (change=0.060237316292104603 %)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,362 | INFO     | right removable region: 462
[2025-11-24 15:56:55] 2025-11-24 14:56:23,362 | INFO     | sum of square deviations: 31784398737.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | sum of deviations: 72259579683.49994
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | mean x: 1763981916.5
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | mean y: 2213718.950854701
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | intersect: -4008074250.0080805
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | chi2: 2.0800170230160937
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | current chi2=2.0800170230160937 (change=49.5701731573775 %)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,364 | INFO     | sum of square deviations: 30776510072.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | sum of deviations: 49440136379.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | mean x: 1763982069.0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | mean y: 2217157.2807775377
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | intersect: -2831486659.60567
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | chi2: 1.9169868999150745
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | current chi2=1.9169868999150745 (change=7.837922540875174 %)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | left removable region: 20
[2025-11-24 15:56:55] 2025-11-24 14:56:23,366 | INFO     | sum of square deviations: 26775834130.5
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | sum of deviations: 104570866072.99997
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | mean x: 1763982038.5
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | mean y: 2230748.547511312
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | intersect: -6886859189.944591
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | chi2: 0.04212638144182003
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | current memory leak: 3.91 B/s (using 442 data points, chi2=0.04)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,368 | INFO     | could have reported an average CPU frequency of 3907 MHz (19 samples)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | ..............................
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . Timing measurements:
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . get job = 0 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . initial setup = 1 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . payload setup = 3 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . stage-in = 0 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . payload execution = 28807 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . stage-out = 0 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | . log creation = 0 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,369 | INFO     | ..............................
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | 
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | job summary report
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | --------------------------------------------------
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | PanDA job id: 6893857674
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | task id: 47523449
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | errors: (none)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,399 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | pilot state: finished 
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | transexitcode: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | exeerrorcode: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | exeerrordiag: 
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | exitcode: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | exitmsg: OK
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | cpuconsumptiontime: 85116 s
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | nevents: 1000
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | neventsw: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | pid: 3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | pgrp: 3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | corecount: 3
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | event service: False
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | sizes: {0: 2298809, 2: 2299071, 11: 2299099, 28814: 2338008, 28815: 2347799, 28816: 2347855, 28821: 2348229}
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | --------------------------------------------------
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | 
[2025-11-24 15:56:55] 2025-11-24 14:56:23,400 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-24 15:56:55] 2025-11-24 14:56:23,411 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,411 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,411 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | job 6893857674 has completed (purged errors)
[2025-11-24 15:56:55] 2025-11-24 14:56:23,412 | INFO     | overall cleanup function is called
[2025-11-24 15:56:55] 2025-11-24 14:56:24,421 | INFO     | --- collectZombieJob: --- 10, [3619846]
[2025-11-24 15:56:55] 2025-11-24 14:56:24,421 | INFO     | zombie collector waiting for pid 3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:24,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:56:55] 2025-11-24 14:56:24,421 | INFO     | collected zombie processes
[2025-11-24 15:56:55] 2025-11-24 14:56:24,421 | INFO     | will attempt to kill all subprocesses of pid=3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:24,464 | INFO     | process IDs to be killed: [3619846] (in reverse order)
[2025-11-24 15:56:55] 2025-11-24 14:56:24,488 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:56:55] 2025-11-24 14:56:24,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:56:55] 2025-11-24 14:56:24,489 | INFO     | did not find any defunct processes belonging to 3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:24,490 | INFO     | did not find any defunct processes belonging to 3619846
[2025-11-24 15:56:55] 2025-11-24 14:56:24,491 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:56:55] 2025-11-24 14:56:24,491 | INFO     | ready for new job
[2025-11-24 15:56:55] 2025-11-24 14:56:24,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:56:55] 2025-11-24 14:56:24,492 | INFO     | ***************************************
[2025-11-24 15:56:55] 2025-11-24 14:56:24,492 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:56:55] 2025-11-24 14:56:24,492 | INFO     | ***************************************
[2025-11-24 15:56:55] 2025-11-24 14:56:24,492 | INFO     | 
[2025-11-24 15:56:55] 2025-11-24 14:56:24,492 | INFO     | architecture information:
[2025-11-24 15:56:55] 2025-11-24 14:56:24,493 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:56:55] 2025-11-24 14:56:24,501 | INFO     | cat /etc/os-release:
[2025-11-24 15:56:55] NAME="CentOS Linux"
[2025-11-24 15:56:55] VERSION="7 (Core)"
[2025-11-24 15:56:55] ID="centos"
[2025-11-24 15:56:55] ID_LIKE="rhel fedora"
[2025-11-24 15:56:55] VERSION_ID="7"
[2025-11-24 15:56:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:56:55] ANSI_COLOR="0;31"
[2025-11-24 15:56:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:56:55] HOME_URL="https://www.centos.org/"
[2025-11-24 15:56:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:56:55] 
[2025-11-24 15:56:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:56:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:56:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:56:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:56:55] 
[2025-11-24 15:56:55] 2025-11-24 14:56:24,501 | INFO     | ***************************************
[2025-11-24 15:56:55] 2025-11-24 14:56:25,002 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | INFO     | sufficient remaining disk space (126249598976 B)
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | INFO     | update_server=False
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:56:55] 2025-11-24 14:56:25,015 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:56:55] 2025-11-24 14:56:25,154 | INFO     | all data control threads have been joined
[2025-11-24 15:56:55] 2025-11-24 14:56:25,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:56:55] 2025-11-24 14:56:25,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:56:55] 2025-11-24 14:56:25,783 | INFO     | aborting loop
[2025-11-24 15:56:55] 2025-11-24 14:56:26,018 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,021 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,067 | INFO     | all job control threads have been joined
[2025-11-24 15:56:55] 2025-11-24 14:56:26,160 | INFO     | [data] control thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,189 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,266 | INFO     | all payload control threads have been joined
[2025-11-24 15:56:55] 2025-11-24 14:56:26,567 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:56:55] 2025-11-24 14:56:26,605 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,788 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,820 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:26,978 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,073 | INFO     | [job] control thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,119 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,126 | INFO     | [job] validate thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,214 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:27,272 | INFO     | [payload] control thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:29,022 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:35,429 | INFO     | job.realtimelogging is not enabled
[2025-11-24 15:56:55] 2025-11-24 14:56:36,433 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:56:55] 2025-11-24 14:56:37,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980744091456)>', '<ExcThread(monitor, started 139979938318080)>']
[2025-11-24 15:56:55] 2025-11-24 14:56:42,213 | INFO     | all workflow threads have been joined
[2025-11-24 15:56:55] 2025-11-24 14:56:42,214 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:56:55] 2025-11-24 14:56:42,214 | INFO     | traces error code: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:42,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | INFO     | PID=3613406 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:56:55] 2025-11-24 14:56:54,925 | INFO     | [monitor] control thread has ended
[2025-11-24 15:56:55] 2025-11-24 14:56:54,971 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:56:55] 2025-11-24 14:56:54,973 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:56:55] 2025-11-24 14:56:54,976 [wrapper] pilotpid: 3613406
[2025-11-24 15:56:55] 2025-11-24 14:56:54,978 [wrapper] Pilot exit status: 0
[2025-11-24 15:56:55] 2025-11-24 14:56:54,985 [wrapper] pandaids: 6893857674 6893857674
[2025-11-24 15:56:55] 2025-11-24 14:56:55,001 [wrapper] cleanup supervisor_pilot 3672213 3613407
[2025-11-24 15:56:55] 2025-11-24 14:56:55,003 [wrapper] Test setup, not cleaning
[2025-11-24 15:56:55] 2025-11-24 14:56:55,005 [wrapper] apfmon messages muted
[2025-11-24 15:56:55] 2025-11-24 14:56:55,008 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:56:55] 2025-11-24 14:56:55,010 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:56:55]  *** Error codes and diagnostics ***
[2025-11-24 15:56:55]     "exeErrorCode": 0,
[2025-11-24 15:56:55]     "exeErrorDiag": "",
[2025-11-24 15:56:55]     "pilotErrorCode": 0,
[2025-11-24 15:56:55]     "pilotErrorDiag": "",
[2025-11-24 15:56:55]  *** Listing of results directory ***
[2025-11-24 15:56:55] total 1704224
[2025-11-24 15:56:55] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:01 pilot3.tar.gz
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:11 queuedata.json
[2025-11-24 15:56:55] -rwx------ 1 boinc boinc     36292 Nov 20 14:12 runpilot2-wrapper.sh
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc       100 Nov 24 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:56:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 03:09 run_atlas
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc       105 Nov 24 03:09 job.xml
[2025-11-24 15:56:55] -rw-r--r-- 3 boinc boinc 409460005 Nov 24 03:09 EVNT.47493127._000498.pool.root.1
[2025-11-24 15:56:55] -rw-r--r-- 3 boinc boinc 409460005 Nov 24 03:09 ATLAS.root_0
[2025-11-24 15:56:55] -rw-r--r-- 2 boinc boinc    590103 Nov 24 03:09 input.tar.gz
[2025-11-24 15:56:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:09 start_atlas.sh
[2025-11-24 15:56:55] drwxrwx--x 2 boinc boinc      4096 Nov 24 03:09 shared
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:09 boinc_setup_complete
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc         0 Nov 24 03:09 boinc_lockfile
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc      6449 Nov 24 07:55 init_data.xml
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc      2785 Nov 24 07:55 pandaJob.out
[2025-11-24 15:56:55] -rw------- 1 boinc boinc    989786 Nov 24 07:55 agis_schedconf.cvmfs.json
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc       532 Nov 24 15:52 boinc_task_state.xml
[2025-11-24 15:56:55] -rw------- 1 boinc boinc 911842848 Nov 24 15:55 HITS.47523449._004975.pool.root.1
[2025-11-24 15:56:55] -rw------- 1 boinc boinc        96 Nov 24 15:56 pilot_heartbeat.json
[2025-11-24 15:56:55] -rw------- 1 boinc boinc      1025 Nov 24 15:56 memory_monitor_summary.json
[2025-11-24 15:56:55] -rw------- 1 boinc boinc   1516227 Nov 24 15:56 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:56:55] -rw------- 1 boinc boinc   1167524 Nov 24 15:56 log.47523449._004975.job.log.tgz.1
[2025-11-24 15:56:55] -rw------- 1 boinc boinc      8569 Nov 24 15:56 heartbeat.json
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc      8192 Nov 24 15:56 boinc_mmap_file
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc        29 Nov 24 15:56 wrapper_checkpoint.txt
[2025-11-24 15:56:55] -rw------- 1 boinc boinc       747 Nov 24 15:56 pilotlog.txt
[2025-11-24 15:56:55] -rw------- 1 boinc boinc   4057473 Nov 24 15:56 log.47523449._004975.job.log.1
[2025-11-24 15:56:55] -rw------- 1 boinc boinc       353 Nov 24 15:56 output.list
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc       620 Nov 24 15:56 runtime_log
[2025-11-24 15:56:55] -rw------- 1 boinc boinc   5242880 Nov 24 15:56 result.tar.gz
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc      8983 Nov 24 15:56 runtime_log.err
[2025-11-24 15:56:55] -rw------- 1 boinc boinc       790 Nov 24 15:56 c0SMDmNdJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTtHKDm0dxKgm.diag
[2025-11-24 15:56:55] -rw-r--r-- 1 boinc boinc     23345 Nov 24 15:56 stderr.txt
[2025-11-24 15:56:55] HITS file was successfully produced:
[2025-11-24 15:56:55] -rw------- 1 boinc boinc 911842848 Nov 24 15:55 shared/HITS.pool.root.1
[2025-11-24 15:56:55]  *** Contents of shared directory: ***
[2025-11-24 15:56:55] total 1296060
[2025-11-24 15:56:55] -rw-r--r-- 3 boinc boinc 409460005 Nov 24 03:09 ATLAS.root_0
[2025-11-24 15:56:55] -rw-r--r-- 2 boinc boinc    590103 Nov 24 03:09 input.tar.gz
[2025-11-24 15:56:55] -rw-r--r-- 2 boinc boinc     15847 Nov 24 03:09 start_atlas.sh
[2025-11-24 15:56:55] -rw------- 1 boinc boinc 911842848 Nov 24 15:55 HITS.pool.root.1
[2025-11-24 15:56:55] -rw------- 1 boinc boinc   5242880 Nov 24 15:56 result.tar.gz
15:56:56 (3609192): run_atlas exited; CPU time 85150.353281
15:56:56 (3609192): called boinc_finish(0)

</stderr_txt>
]]>

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