Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:10:52 (1762294): wrapper (7.7.26015): starting
20:10:52 (1762294): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 20:10:52] Arguments: --nthreads 4
[2025-11-25 20:10:52] Threads: 4
[2025-11-25 20:10:52] Checking for CVMFS
[2025-11-25 20:10:52] No cvmfs_config command found, will try listing directly
[2025-11-25 20:10:52] CVMFS is ok
[2025-11-25 20:10:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:10:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:10:52] Further information can be found at the LHC@home message board.
[2025-11-25 20:10:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:10:52] Checking for apptainer binary...
[2025-11-25 20:10:52] which: no apptainer in ((null))
[2025-11-25 20:10:52] apptainer is not installed, using version from CVMFS
[2025-11-25 20:10:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:10:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-25 20:10:52] apptainer works
[2025-11-25 20:10:52] Set ATHENA_PROC_NUMBER=4
[2025-11-25 20:10:52] Set ATHENA_CORE_NUMBER=4
[2025-11-25 20:10:52] Starting ATLAS job with PandaID=6893858262
[2025-11-25 20:10:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:05:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:05:54] 2025-11-26 11:00:44,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:05:54] 2025-11-26 11:00:44,593 | INFO     | time since job start (56976s) is within the limit (172800.0s)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,044 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:05:54] 2025-11-26 11:00:46,065 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2691.902804687502
[2025-11-26 12:05:54] 2025-11-26 11:00:46,090 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893858262/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,091 | INFO     | extracted standard info from prmon json
[2025-11-26 12:05:54] 2025-11-26 11:00:46,091 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:05:54] 2025-11-26 11:00:46,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:05:54] 2025-11-26 11:00:46,107 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:05:54] 2025-11-26 11:00:46,108 | INFO     | sum of square deviations: 252649564997.5
[2025-11-26 12:05:54] 2025-11-26 11:00:46,131 | INFO     | sum of deviations: 716558578248.5
[2025-11-26 12:05:54] 2025-11-26 11:00:46,131 | INFO     | mean x: 1764126359.5
[2025-11-26 12:05:54] 2025-11-26 11:00:46,131 | INFO     | mean y: 2273975.699143469
[2025-11-26 12:05:54] 2025-11-26 11:00:46,131 | INFO     | intersect: -5001098486.1791525
[2025-11-26 12:05:54] 2025-11-26 11:00:46,132 | INFO     | chi2: 3.9750960523350303
[2025-11-26 12:05:54] 2025-11-26 11:00:46,133 | INFO     | sum of square deviations: 248613703280.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,155 | INFO     | sum of deviations: 903352959265.9999
[2025-11-26 12:05:54] 2025-11-26 11:00:46,155 | INFO     | mean x: 1764126207.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,155 | INFO     | mean y: 2281026.039827772
[2025-11-26 12:05:54] 2025-11-26 11:00:46,155 | INFO     | intersect: -6407778470.2275095
[2025-11-26 12:05:54] 2025-11-26 11:00:46,156 | INFO     | chi2: 1.9223790009802368
[2025-11-26 12:05:54] 2025-11-26 11:00:46,156 | INFO     | current chi2=1.9223790009802368 (change=51.63943271632385 %)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,157 | INFO     | sum of square deviations: 244621051675.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,177 | INFO     | sum of deviations: 899475134701.4995
[2025-11-26 12:05:54] 2025-11-26 11:00:46,178 | INFO     | mean x: 1764126054.5
[2025-11-26 12:05:54] 2025-11-26 11:00:46,178 | INFO     | mean y: 2280877.0984848486
[2025-11-26 12:05:54] 2025-11-26 11:00:46,178 | INFO     | intersect: -6484436065.848826
[2025-11-26 12:05:54] 2025-11-26 11:00:46,179 | INFO     | chi2: 1.9137525907626407
[2025-11-26 12:05:54] 2025-11-26 11:00:46,179 | INFO     | current chi2=1.9137525907626407 (change=0.4487361864230445 %)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,179 | INFO     | right removable region: 923
[2025-11-26 12:05:54] 2025-11-26 11:00:46,180 | INFO     | sum of square deviations: 248613703280.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,202 | INFO     | sum of deviations: 550597195757.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,202 | INFO     | mean x: 1764126512.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,202 | INFO     | mean y: 2280234.649085038
[2025-11-26 12:05:54] 2025-11-26 11:00:46,203 | INFO     | intersect: -3904677015.3051925
[2025-11-26 12:05:54] 2025-11-26 11:00:46,204 | INFO     | chi2: 2.164242807409842
[2025-11-26 12:05:54] 2025-11-26 11:00:46,204 | INFO     | current chi2=2.164242807409842 (change=45.55495568117068 %)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,205 | INFO     | sum of square deviations: 244621051675.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,226 | INFO     | sum of deviations: 520526873596.0003
[2025-11-26 12:05:54] 2025-11-26 11:00:46,227 | INFO     | mean x: 1764126664.5
[2025-11-26 12:05:54] 2025-11-26 11:00:46,227 | INFO     | mean y: 2281382.8181818184
[2025-11-26 12:05:54] 2025-11-26 11:00:46,227 | INFO     | intersect: -3751587431.8721113
[2025-11-26 12:05:54] 2025-11-26 11:00:46,228 | INFO     | chi2: 2.143445049539075
[2025-11-26 12:05:54] 2025-11-26 11:00:46,228 | INFO     | current chi2=2.143445049539075 (change=0.9609715601022452 %)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,228 | INFO     | left removable region: 20
[2025-11-26 12:05:54] 2025-11-26 11:00:46,229 | INFO     | sum of square deviations: 228318520892.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,250 | INFO     | sum of deviations: 654003755561.9999
[2025-11-26 12:05:54] 2025-11-26 11:00:46,250 | INFO     | mean x: 1764126634.0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,250 | INFO     | mean y: 2290282.135105205
[2025-11-26 12:05:54] 2025-11-26 11:00:46,250 | INFO     | intersect: -5050937285.280234
[2025-11-26 12:05:54] 2025-11-26 11:00:46,251 | INFO     | chi2: 0.054783308538295196
[2025-11-26 12:05:54] 2025-11-26 11:00:46,252 | INFO     | current memory leak: 2.86 B/s (using 903 data points, chi2=0.05)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,253 | INFO     | could have reported an average CPU frequency of 2672 MHz (35 samples)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,253 | INFO     | ..............................
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . Timing measurements:
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . get job = 0 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . initial setup = 1 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . payload setup = 9 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . stage-in = 0 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . payload execution = 56934 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . stage-out = 2 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | . log creation = 0 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,254 | INFO     | ..............................
[2025-11-26 12:05:54] 2025-11-26 11:00:46,598 | INFO     | time since job start (56978s) is within the limit (172800.0s)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,812 | INFO     | 
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | job summary report
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | --------------------------------------------------
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | PanDA job id: 6893858262
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | task id: 47523449
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | errors: (none)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | pilot state: finished 
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | transexitcode: 0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | exeerrorcode: 0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | exeerrordiag: 
[2025-11-26 12:05:54] 2025-11-26 11:00:46,813 | INFO     | exitcode: 0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | exitmsg: OK
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | cpuconsumptiontime: 226137 s
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | nevents: 1000
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | neventsw: 0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | pid: 1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | pgrp: 1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | corecount: 4
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | event service: False
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | sizes: {0: 2284150, 1: 2284349, 7: 2284611, 11: 2284639, 56947: 2338784, 56950: 2347802, 56953: 2347986, 56960: 2348232}
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | --------------------------------------------------
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | 
[2025-11-26 12:05:54] 2025-11-26 11:00:46,814 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-26 12:05:54] 2025-11-26 11:00:46,845 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,846 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,847 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:05:54] 2025-11-26 11:00:46,848 | INFO     | job 6893858262 has completed (purged errors)
[2025-11-26 12:05:54] 2025-11-26 11:00:46,848 | INFO     | overall cleanup function is called
[2025-11-26 12:05:54] 2025-11-26 11:00:47,866 | INFO     | --- collectZombieJob: --- 10, [1773972]
[2025-11-26 12:05:54] 2025-11-26 11:00:47,866 | INFO     | zombie collector waiting for pid 1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:47,866 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:05:54] 2025-11-26 11:00:47,866 | INFO     | collected zombie processes
[2025-11-26 12:05:54] 2025-11-26 11:00:47,866 | INFO     | will attempt to kill all subprocesses of pid=1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:48,689 | INFO     | process IDs to be killed: [1773972] (in reverse order)
[2025-11-26 12:05:54] 2025-11-26 11:00:48,927 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:05:54] 2025-11-26 11:00:48,928 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:05:54] 2025-11-26 11:00:48,962 | INFO     | did not find any defunct processes belonging to 1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:48,995 | INFO     | did not find any defunct processes belonging to 1773972
[2025-11-26 12:05:54] 2025-11-26 11:00:48,997 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:05:54] 2025-11-26 11:00:48,998 | INFO     | ready for new job
[2025-11-26 12:05:54] 2025-11-26 11:00:48,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:05:54] 2025-11-26 11:00:49,004 | INFO     | ***************************************
[2025-11-26 12:05:54] 2025-11-26 11:00:49,005 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:05:54] 2025-11-26 11:00:49,005 | INFO     | ***************************************
[2025-11-26 12:05:54] 2025-11-26 11:00:49,005 | INFO     | 
[2025-11-26 12:05:54] 2025-11-26 11:00:49,014 | INFO     | architecture information:
[2025-11-26 12:05:54] 2025-11-26 11:00:49,014 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:05:54] 2025-11-26 11:00:49,038 | INFO     | cat /etc/os-release:
[2025-11-26 12:05:54] NAME="CentOS Linux"
[2025-11-26 12:05:54] VERSION="7 (Core)"
[2025-11-26 12:05:54] ID="centos"
[2025-11-26 12:05:54] ID_LIKE="rhel fedora"
[2025-11-26 12:05:54] VERSION_ID="7"
[2025-11-26 12:05:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:05:54] ANSI_COLOR="0;31"
[2025-11-26 12:05:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:05:54] HOME_URL="https://www.centos.org/"
[2025-11-26 12:05:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:05:54] 
[2025-11-26 12:05:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:05:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:05:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:05:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:05:54] 
[2025-11-26 12:05:54] 2025-11-26 11:00:49,038 | INFO     | ***************************************
[2025-11-26 12:05:54] 2025-11-26 11:00:49,541 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-26 12:05:54] 2025-11-26 11:00:49,571 | INFO     | sufficient remaining disk space (3304250671104 B)
[2025-11-26 12:05:54] 2025-11-26 11:00:49,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:05:54] 2025-11-26 11:00:49,572 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:05:54] 2025-11-26 11:00:49,572 | INFO     | update_server=False
[2025-11-26 12:05:54] 2025-11-26 11:00:49,572 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:05:54] 2025-11-26 11:00:49,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:05:54] 2025-11-26 11:00:49,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:05:54] 2025-11-26 11:00:49,909 | INFO     | all job control threads have been joined
[2025-11-26 12:05:54] 2025-11-26 11:00:50,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:05:54] 2025-11-26 11:00:50,337 | INFO     | aborting loop
[2025-11-26 12:05:54] 2025-11-26 11:00:50,578 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:50,610 | INFO     | all data control threads have been joined
[2025-11-26 12:05:54] 2025-11-26 11:00:50,728 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:50,729 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:50,914 | INFO     | [job] control thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,005 | INFO     | all payload control threads have been joined
[2025-11-26 12:05:54] 2025-11-26 11:00:51,155 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,160 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,186 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,342 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:05:54] 2025-11-26 11:00:51,450 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,578 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,616 | INFO     | [data] control thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,753 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:51,905 | INFO     | [job] validate thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:52,009 | INFO     | [payload] control thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:52,373 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:00:53,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:05:54] 2025-11-26 11:01:20,653 | INFO     | PID=1766664 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 12:05:54] 2025-11-26 11:01:20,654 | INFO     | .. there are 6 such processes running
[2025-11-26 12:05:54] 2025-11-26 11:01:20,654 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:05:54] 2025-11-26 11:01:20,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:05:54] 2025-11-26 11:01:20,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:05:54] 2025-11-26 11:01:41,209 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:05:54] 2025-11-26 11:01:42,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22612950038336)>', '<ExcThread(monitor, started 22612704970496)>']
[2025-11-26 12:05:54] 2025-11-26 11:01:42,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:05:54] 2025-11-26 11:01:42,750 | INFO     | [monitor] control thread has ended
[2025-11-26 12:05:54] 2025-11-26 11:01:47,573 | INFO     | all workflow threads have been joined
[2025-11-26 12:05:54] 2025-11-26 11:01:47,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:05:54] 2025-11-26 11:01:47,574 | INFO     | traces error code: 0
[2025-11-26 12:05:54] 2025-11-26 11:01:47,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:05:54] 2025-11-26 11:01:47,726 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:05:54] 2025-11-26 11:01:47,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:05:54] 2025-11-26 11:01:47,737 [wrapper] pilotpid: 1766664
[2025-11-26 12:05:54] 2025-11-26 11:01:47,741 [wrapper] Pilot exit status: 0
[2025-11-26 12:05:54] 2025-11-26 11:01:47,755 [wrapper] pandaids: 6893858262
[2025-11-26 12:05:54] 2025-11-26 11:01:47,931 [wrapper] cleanup supervisor_pilot 3002632 1766665
[2025-11-26 12:05:54] 2025-11-26 11:01:47,935 [wrapper] Test setup, not cleaning
[2025-11-26 12:05:54] 2025-11-26 11:01:47,939 [wrapper] apfmon messages muted
[2025-11-26 12:05:54] 2025-11-26 11:01:47,942 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:05:54] 2025-11-26 11:01:47,945 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:05:54]  *** Error codes and diagnostics ***
[2025-11-26 12:05:54]     "exeErrorCode": 0,
[2025-11-26 12:05:54]     "exeErrorDiag": "",
[2025-11-26 12:05:54]     "pilotErrorCode": 0,
[2025-11-26 12:05:54]     "pilotErrorDiag": "",
[2025-11-26 12:05:54]  *** Listing of results directory ***
[2025-11-26 12:05:54] total 1332468
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc    576529 Nov 20 14:12 pilot3.tar.gz
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc      5112 Nov 20 14:14 queuedata.json
[2025-11-26 12:05:54] -rwx------ 1 boinc boinc     36292 Nov 20 14:15 runpilot2-wrapper.sh
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:05:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:10 run_atlas
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:10 job.xml
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc      6688 Nov 25 20:10 init_data.xml
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc 412007760 Nov 25 20:10 EVNT.47493127._000509.pool.root.1
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:10 start_atlas.sh
[2025-11-26 12:05:54] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:10 shared
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc    590098 Nov 25 20:10 input.tar.gz
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:10 boinc_lockfile
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc      2783 Nov 25 20:10 pandaJob.out
[2025-11-26 12:05:54] -rw------- 1 boinc boinc    991543 Nov 25 20:11 agis_schedconf.cvmfs.json
[2025-11-26 12:05:54] drwx------ 5 boinc boinc      4096 Nov 25 20:11 pilot3
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc       532 Nov 26 11:54 boinc_task_state.xml
[2025-11-26 12:05:54] -rw------- 1 boinc boinc 929409722 Nov 26 11:59 HITS.47523449._005081.pool.root.1
[2025-11-26 12:05:54] -rw------- 1 boinc boinc      1039 Nov 26 12:00 memory_monitor_summary.json
[2025-11-26 12:05:54] -rw------- 1 boinc boinc   1516240 Nov 26 12:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:05:54] -rw------- 1 boinc boinc   1683852 Nov 26 12:00 log.47523449._005081.job.log.tgz.1
[2025-11-26 12:05:54] -rw------- 1 boinc boinc        95 Nov 26 12:00 pilot_heartbeat.json
[2025-11-26 12:05:54] -rw------- 1 boinc boinc      8592 Nov 26 12:00 heartbeat.json
[2025-11-26 12:05:54] -rw------- 1 boinc boinc      4836 Nov 26 12:01 pilotlog.txt
[2025-11-26 12:05:54] -rw------- 1 boinc boinc   7872235 Nov 26 12:01 log.47523449._005081.job.log.1
[2025-11-26 12:05:54] -rw------- 1 boinc boinc       353 Nov 26 12:01 output.list
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc       620 Nov 26 12:01 runtime_log
[2025-11-26 12:05:54] -rw------- 1 boinc boinc   9574400 Nov 26 12:01 result.tar.gz
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc      9223 Nov 26 12:01 runtime_log.err
[2025-11-26 12:05:54] -rw------- 1 boinc boinc       670 Nov 26 12:01 CAcLDmLgJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4tHKDmjwVTOm.diag
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc        28 Nov 26 12:05 wrapper_checkpoint.txt
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc      8192 Nov 26 12:05 boinc_mmap_file
[2025-11-26 12:05:54] -rw-r--r-- 1 boinc boinc     21070 Nov 26 12:05 stderr.txt
[2025-11-26 12:05:54] HITS file was successfully produced:
[2025-11-26 12:05:54] -rw------- 1 boinc boinc 929409722 Nov 26 11:59 shared/HITS.pool.root.1
[2025-11-26 12:05:54]  *** Contents of shared directory: ***
[2025-11-26 12:05:54] total 1319936
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc 412007760 Nov 25 20:10 ATLAS.root_0
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:10 start_atlas.sh
[2025-11-26 12:05:54] -rw-r--r-- 2 boinc boinc    590098 Nov 25 20:10 input.tar.gz
[2025-11-26 12:05:54] -rw------- 1 boinc boinc 929409722 Nov 26 11:59 HITS.pool.root.1
[2025-11-26 12:05:54] -rw------- 1 boinc boinc   9574400 Nov 26 12:01 result.tar.gz
12:05:55 (1762294): run_atlas exited; CPU time 229121.720744
12:05:55 (1762294): called boinc_finish(0)

</stderr_txt>
]]>

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