Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:06:05 (3035306): wrapper (7.7.26015): starting
12:06:05 (3035306): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 12:06:05] Arguments: --nthreads 4
[2025-11-26 12:06:05] Threads: 4
[2025-11-26 12:06:05] Checking for CVMFS
[2025-11-26 12:06:05] No cvmfs_config command found, will try listing directly
[2025-11-26 12:06:05] CVMFS is ok
[2025-11-26 12:06:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:06:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:06:05] Further information can be found at the LHC@home message board.
[2025-11-26 12:06:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:06:05] Checking for apptainer binary...
[2025-11-26 12:06:05] which: no apptainer in ((null))
[2025-11-26 12:06:05] apptainer is not installed, using version from CVMFS
[2025-11-26 12:06:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:06:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-26 12:06:06] apptainer works
[2025-11-26 12:06:06] Set ATHENA_PROC_NUMBER=4
[2025-11-26 12:06:06] Set ATHENA_CORE_NUMBER=4
[2025-11-26 12:06:06] Starting ATLAS job with PandaID=6893848038
[2025-11-26 12:06:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:31:46]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:31:46] 2025-11-27 02:27:51,234 | INFO     | monitor loop #3745: job 0:6893848038 is in state 'finished'
[2025-11-27 03:31:46] 2025-11-27 02:27:51,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:31:46] 2025-11-27 02:27:51,428 | INFO     | time since job start (55291s) is within the limit (172800.0s)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,126 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:31:46] 2025-11-27 02:27:52,147 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2706.161414062501
[2025-11-27 03:31:46] 2025-11-27 02:27:52,171 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6893848038/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,172 | INFO     | extracted standard info from prmon json
[2025-11-27 03:31:46] 2025-11-27 02:27:52,172 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:31:46] 2025-11-27 02:27:52,172 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:31:46] 2025-11-27 02:27:52,187 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:31:46] 2025-11-27 02:27:52,188 | INFO     | sum of square deviations: 230601691142.5
[2025-11-27 03:31:46] 2025-11-27 02:27:52,209 | INFO     | sum of deviations: 744518029630.5006
[2025-11-27 03:31:46] 2025-11-27 02:27:52,209 | INFO     | mean x: 1764182818.5
[2025-11-27 03:31:46] 2025-11-27 02:27:52,209 | INFO     | mean y: 2269400.641280353
[2025-11-27 03:31:46] 2025-11-27 02:27:52,209 | INFO     | intersect: -5693551429.77036
[2025-11-27 03:31:46] 2025-11-27 02:27:52,210 | INFO     | chi2: 4.390835818949048
[2025-11-27 03:31:46] 2025-11-27 02:27:52,211 | INFO     | sum of square deviations: 226804810650.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,230 | INFO     | sum of deviations: 938618448968.0016
[2025-11-27 03:31:46] 2025-11-27 02:27:52,230 | INFO     | mean x: 1764182666.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,230 | INFO     | mean y: 2277192.4006659267
[2025-11-27 03:31:46] 2025-11-27 02:27:52,231 | INFO     | intersect: -7298689629.738271
[2025-11-27 03:31:46] 2025-11-27 02:27:52,232 | INFO     | chi2: 2.0537410864477286
[2025-11-27 03:31:46] 2025-11-27 02:27:52,232 | INFO     | current chi2=2.0537410864477286 (change=53.22664815694944 %)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,233 | INFO     | sum of square deviations: 223049837920.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,253 | INFO     | sum of deviations: 934457058675.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,253 | INFO     | mean x: 1764182513.5
[2025-11-27 03:31:46] 2025-11-27 02:27:52,253 | INFO     | mean y: 2277022.4598214286
[2025-11-27 03:31:46] 2025-11-27 02:27:52,253 | INFO     | intersect: -7388684647.381675
[2025-11-27 03:31:46] 2025-11-27 02:27:52,254 | INFO     | chi2: 2.043802186763466
[2025-11-27 03:31:46] 2025-11-27 02:27:52,254 | INFO     | current chi2=2.043802186763466 (change=0.48394122072386214 %)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,254 | INFO     | right removable region: 895
[2025-11-27 03:31:46] 2025-11-27 02:27:52,255 | INFO     | sum of square deviations: 226804810650.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,275 | INFO     | sum of deviations: 573081752934.9999
[2025-11-27 03:31:46] 2025-11-27 02:27:52,276 | INFO     | mean x: 1764182971.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,276 | INFO     | mean y: 2276274.039955605
[2025-11-27 03:31:46] 2025-11-27 02:27:52,276 | INFO     | intersect: -4455394031.194181
[2025-11-27 03:31:46] 2025-11-27 02:27:52,277 | INFO     | chi2: 2.4576108710851905
[2025-11-27 03:31:46] 2025-11-27 02:27:52,277 | INFO     | current chi2=2.4576108710851905 (change=44.0286320777664 %)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,278 | INFO     | sum of square deviations: 223049837920.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,298 | INFO     | sum of deviations: 545480856503.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,298 | INFO     | mean x: 1764183123.5
[2025-11-27 03:31:46] 2025-11-27 02:27:52,298 | INFO     | mean y: 2277394.828125
[2025-11-27 03:31:46] 2025-11-27 02:27:52,298 | INFO     | intersect: -4312131125.746861
[2025-11-27 03:31:46] 2025-11-27 02:27:52,299 | INFO     | chi2: 2.442356505293745
[2025-11-27 03:31:46] 2025-11-27 02:27:52,299 | INFO     | current chi2=2.442356505293745 (change=0.6206989874157707 %)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,300 | INFO     | left removable region: 20
[2025-11-27 03:31:46] 2025-11-27 02:27:52,301 | INFO     | sum of square deviations: 207731336750.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,319 | INFO     | sum of deviations: 683497799316.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,320 | INFO     | mean x: 1764183093.0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,320 | INFO     | mean y: 2287255.625142857
[2025-11-27 03:31:46] 2025-11-27 02:27:52,320 | INFO     | intersect: -5802399126.89771
[2025-11-27 03:31:46] 2025-11-27 02:27:52,321 | INFO     | chi2: 0.062155480858282076
[2025-11-27 03:31:46] 2025-11-27 02:27:52,321 | INFO     | current memory leak: 3.29 B/s (using 875 data points, chi2=0.06)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | could have reported an average CPU frequency of 2684 MHz (34 samples)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | ..............................
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | . Timing measurements:
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | . get job = 0 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | . initial setup = 1 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,322 | INFO     | . payload setup = 9 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,323 | INFO     | . stage-in = 0 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,323 | INFO     | . payload execution = 55244 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,323 | INFO     | . stage-out = 3 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,323 | INFO     | . log creation = 0 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,323 | INFO     | ..............................
[2025-11-27 03:31:46] 2025-11-27 02:27:52,416 | INFO     | 
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | job summary report
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | --------------------------------------------------
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | PanDA job id: 6893848038
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | task id: 47523449
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | errors: (none)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | pilot state: finished 
[2025-11-27 03:31:46] 2025-11-27 02:27:52,417 | INFO     | transexitcode: 0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | exeerrorcode: 0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | exeerrordiag: 
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | exitcode: 0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | exitmsg: OK
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | cpuconsumptiontime: 218773 s
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | nevents: 1000
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | neventsw: 0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | pid: 3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | pgrp: 3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | corecount: 4
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | event service: False
[2025-11-27 03:31:46] 2025-11-27 02:27:52,418 | INFO     | sizes: {0: 2284155, 1: 2284354, 8: 2284616, 11: 2284644, 55258: 2337408, 55262: 2346426, 55264: 2346610, 55274: 2346856}
[2025-11-27 03:31:46] 2025-11-27 02:27:52,419 | INFO     | --------------------------------------------------
[2025-11-27 03:31:46] 2025-11-27 02:27:52,419 | INFO     | 
[2025-11-27 03:31:46] 2025-11-27 02:27:52,419 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-27 03:31:46] 2025-11-27 02:27:52,451 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,451 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,452 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,453 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:31:46] 2025-11-27 02:27:52,454 | INFO     | job 6893848038 has completed (purged errors)
[2025-11-27 03:31:46] 2025-11-27 02:27:52,454 | INFO     | overall cleanup function is called
[2025-11-27 03:31:46] 2025-11-27 02:27:53,471 | INFO     | --- collectZombieJob: --- 10, [3049521]
[2025-11-27 03:31:46] 2025-11-27 02:27:53,472 | INFO     | zombie collector waiting for pid 3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:53,472 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:31:46] 2025-11-27 02:27:53,472 | INFO     | collected zombie processes
[2025-11-27 03:31:46] 2025-11-27 02:27:53,472 | INFO     | will attempt to kill all subprocesses of pid=3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:54,223 | INFO     | process IDs to be killed: [3049521] (in reverse order)
[2025-11-27 03:31:46] 2025-11-27 02:27:54,469 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:31:46] 2025-11-27 02:27:54,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:31:46] 2025-11-27 02:27:54,501 | INFO     | did not find any defunct processes belonging to 3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:54,530 | INFO     | did not find any defunct processes belonging to 3049521
[2025-11-27 03:31:46] 2025-11-27 02:27:54,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:31:46] 2025-11-27 02:27:54,532 | INFO     | ready for new job
[2025-11-27 03:31:46] 2025-11-27 02:27:54,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:31:46] 2025-11-27 02:27:54,538 | INFO     | ***************************************
[2025-11-27 03:31:46] 2025-11-27 02:27:54,538 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:31:46] 2025-11-27 02:27:54,538 | INFO     | ***************************************
[2025-11-27 03:31:46] 2025-11-27 02:27:54,538 | INFO     | 
[2025-11-27 03:31:46] 2025-11-27 02:27:54,546 | INFO     | architecture information:
[2025-11-27 03:31:46] 2025-11-27 02:27:54,547 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:31:46] 2025-11-27 02:27:54,569 | INFO     | cat /etc/os-release:
[2025-11-27 03:31:46] NAME="CentOS Linux"
[2025-11-27 03:31:46] VERSION="7 (Core)"
[2025-11-27 03:31:46] ID="centos"
[2025-11-27 03:31:46] ID_LIKE="rhel fedora"
[2025-11-27 03:31:46] VERSION_ID="7"
[2025-11-27 03:31:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:31:46] ANSI_COLOR="0;31"
[2025-11-27 03:31:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:31:46] HOME_URL="https://www.centos.org/"
[2025-11-27 03:31:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:31:46] 
[2025-11-27 03:31:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:31:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:31:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:31:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:31:46] 
[2025-11-27 03:31:46] 2025-11-27 02:27:54,569 | INFO     | ***************************************
[2025-11-27 03:31:46] 2025-11-27 02:27:55,073 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-27 03:31:46] 2025-11-27 02:27:55,094 | INFO     | sufficient remaining disk space (3286269689856 B)
[2025-11-27 03:31:46] 2025-11-27 02:27:55,095 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:31:46] 2025-11-27 02:27:55,095 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:31:46] 2025-11-27 02:27:55,095 | INFO     | update_server=False
[2025-11-27 03:31:46] 2025-11-27 02:27:55,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:31:46] 2025-11-27 02:27:55,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:31:46] 2025-11-27 02:27:55,096 | INFO     | aborting loop
[2025-11-27 03:31:46] 2025-11-27 02:27:55,369 | INFO     | all data control threads have been joined
[2025-11-27 03:31:46] 2025-11-27 02:27:55,610 | INFO     | all job control threads have been joined
[2025-11-27 03:31:46] 2025-11-27 02:27:56,101 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,102 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,136 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:31:46] 2025-11-27 02:27:56,372 | INFO     | [data] control thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,505 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,514 | INFO     | all payload control threads have been joined
[2025-11-27 03:31:46] 2025-11-27 02:27:56,616 | INFO     | [job] control thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,844 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:56,940 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:57,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:31:46] 2025-11-27 02:27:57,428 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:31:46] 2025-11-27 02:27:57,434 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:57,436 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:57,448 | INFO     | [job] validate thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:57,519 | INFO     | [payload] control thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:57,553 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:58,141 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:27:58,433 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:28:01,325 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:31:46] 2025-11-27 02:28:25,285 | INFO     | PID=3039307 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:31:46] 2025-11-27 02:28:25,285 | INFO     | .. there are 5 such processes running
[2025-11-27 03:31:46] 2025-11-27 02:28:25,285 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:31:46] 2025-11-27 02:28:25,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:31:46] 2025-11-27 02:28:25,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:31:46] 2025-11-27 02:28:48,297 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:31:46] 2025-11-27 02:28:49,432 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22400719394624)>', '<ExcThread(monitor, started 22400477390592)>']
[2025-11-27 03:31:46] 2025-11-27 02:28:50,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:31:46] 2025-11-27 02:28:50,392 | INFO     | [monitor] control thread has ended
[2025-11-27 03:31:46] 2025-11-27 02:28:54,437 | INFO     | all workflow threads have been joined
[2025-11-27 03:31:46] 2025-11-27 02:28:54,437 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:31:46] 2025-11-27 02:28:54,437 | INFO     | traces error code: 0
[2025-11-27 03:31:46] 2025-11-27 02:28:54,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:31:46] 2025-11-27 02:28:54,585 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:31:46] 2025-11-27 02:28:54,589 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:31:46] 2025-11-27 02:28:54,593 [wrapper] pilotpid: 3039307
[2025-11-27 03:31:46] 2025-11-27 02:28:54,596 [wrapper] Pilot exit status: 0
[2025-11-27 03:31:46] 2025-11-27 02:28:54,611 [wrapper] pandaids: 6893848038
[2025-11-27 03:31:46] 2025-11-27 02:28:54,782 [wrapper] cleanup supervisor_pilot   43863 3039308
[2025-11-27 03:31:46] 2025-11-27 02:28:54,786 [wrapper] Test setup, not cleaning
[2025-11-27 03:31:46] 2025-11-27 02:28:54,791 [wrapper] apfmon messages muted
[2025-11-27 03:31:46] 2025-11-27 02:28:54,795 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:31:46] 2025-11-27 02:28:54,799 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:31:46]  *** Error codes and diagnostics ***
[2025-11-27 03:31:46]     "exeErrorCode": 0,
[2025-11-27 03:31:46]     "exeErrorDiag": "",
[2025-11-27 03:31:46]     "pilotErrorCode": 0,
[2025-11-27 03:31:46]     "pilotErrorDiag": "",
[2025-11-27 03:31:46]  *** Listing of results directory ***
[2025-11-27 03:31:46] total 1316816
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 03:31:46] -rwx------ 1 boinc boinc     36292 Nov 20 11:27 runpilot2-wrapper.sh
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:27 queuedata.json
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc       100 Nov 26 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:31:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 12:06 run_atlas
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc       105 Nov 26 12:06 job.xml
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc 409083913 Nov 26 12:06 EVNT.47493127._000255.pool.root.1
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc      6688 Nov 26 12:06 init_data.xml
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:06 start_atlas.sh
[2025-11-27 03:31:46] drwxrwx--x 2 boinc boinc      4096 Nov 26 12:06 shared
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc    590097 Nov 26 12:06 input.tar.gz
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc         0 Nov 26 12:06 boinc_lockfile
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc      2785 Nov 26 12:06 pandaJob.out
[2025-11-27 03:31:46] -rw------- 1 boinc boinc    991827 Nov 26 12:06 agis_schedconf.cvmfs.json
[2025-11-27 03:31:46] drwx------ 5 boinc boinc      4096 Nov 26 12:06 pilot3
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc       532 Nov 27 03:21 boinc_task_state.xml
[2025-11-27 03:31:46] -rw------- 1 boinc boinc 916820442 Nov 27 03:27 HITS.47523449._002546.pool.root.1
[2025-11-27 03:31:46] -rw------- 1 boinc boinc      1042 Nov 27 03:27 memory_monitor_summary.json
[2025-11-27 03:31:46] -rw------- 1 boinc boinc        95 Nov 27 03:27 pilot_heartbeat.json
[2025-11-27 03:31:46] -rw------- 1 boinc boinc   1516240 Nov 27 03:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:31:46] -rw------- 1 boinc boinc   1660059 Nov 27 03:27 log.47523449._002546.job.log.tgz.1
[2025-11-27 03:31:46] -rw------- 1 boinc boinc      8596 Nov 27 03:27 heartbeat.json
[2025-11-27 03:31:46] -rw------- 1 boinc boinc      4835 Nov 27 03:28 pilotlog.txt
[2025-11-27 03:31:46] -rw------- 1 boinc boinc   7634844 Nov 27 03:28 log.47523449._002546.job.log.1
[2025-11-27 03:31:46] -rw------- 1 boinc boinc       353 Nov 27 03:28 output.list
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc       620 Nov 27 03:28 runtime_log
[2025-11-27 03:31:46] -rw------- 1 boinc boinc   9318400 Nov 27 03:28 result.tar.gz
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc      9223 Nov 27 03:28 runtime_log.err
[2025-11-27 03:31:46] -rw------- 1 boinc boinc       670 Nov 27 03:28 htrLDmd3Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmATHKDmQsl3bm.diag
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc        28 Nov 27 03:31 wrapper_checkpoint.txt
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc      8192 Nov 27 03:31 boinc_mmap_file
[2025-11-27 03:31:46] -rw-r--r-- 1 boinc boinc     21055 Nov 27 03:31 stderr.txt
[2025-11-27 03:31:46] HITS file was successfully produced:
[2025-11-27 03:31:46] -rw------- 1 boinc boinc 916820442 Nov 27 03:27 shared/HITS.pool.root.1
[2025-11-27 03:31:46]  *** Contents of shared directory: ***
[2025-11-27 03:31:46] total 1304540
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc 409083913 Nov 26 12:06 ATLAS.root_0
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc     15847 Nov 26 12:06 start_atlas.sh
[2025-11-27 03:31:46] -rw-r--r-- 2 boinc boinc    590097 Nov 26 12:06 input.tar.gz
[2025-11-27 03:31:46] -rw------- 1 boinc boinc 916820442 Nov 27 03:27 HITS.pool.root.1
[2025-11-27 03:31:46] -rw------- 1 boinc boinc   9318400 Nov 27 03:28 result.tar.gz
03:31:47 (3035306): run_atlas exited; CPU time 221540.133131
03:31:47 (3035306): called boinc_finish(0)

</stderr_txt>
]]>

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