Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:29:29 (1787442): wrapper (7.7.26015): starting
23:29:29 (1787442): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 23:29:29] Arguments: --nthreads 4
[2025-11-20 23:29:29] Threads: 4
[2025-11-20 23:29:29] Checking for CVMFS
[2025-11-20 23:29:29] No cvmfs_config command found, will try listing directly
[2025-11-20 23:29:29] CVMFS is ok
[2025-11-20 23:29:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:29:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:29:29] Further information can be found at the LHC@home message board.
[2025-11-20 23:29:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:29:29] Checking for apptainer binary...
[2025-11-20 23:29:29] which: no apptainer in ((null))
[2025-11-20 23:29:29] apptainer is not installed, using version from CVMFS
[2025-11-20 23:29:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:29:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-11-20 23:29:29] apptainer works
[2025-11-20 23:29:29] Set ATHENA_PROC_NUMBER=4
[2025-11-20 23:29:29] Set ATHENA_CORE_NUMBER=4
[2025-11-20 23:29:29] Starting ATLAS job with PandaID=6893847973
[2025-11-20 23:29:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 17:12:38]  *** The last 200 lines of the pilot log: ***
[2025-11-21 17:12:38] 2025-11-21 15:46:29,947 | INFO     | time since job start (62209s) is within the limit (172800.0s)
[2025-11-21 17:12:38] 2025-11-21 15:46:29,948 | INFO     | 62211s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 17:12:38] 2025-11-21 15:46:31,391 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 17:12:38] 2025-11-21 15:46:31,401 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2735.625671874999
[2025-11-21 17:12:38] 2025-11-21 15:46:31,412 | INFO     | using path: /scratch/boinc/var/slot56/slots/1/PanDA_Pilot-6893847973/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,413 | INFO     | extracted standard info from prmon json
[2025-11-21 17:12:38] 2025-11-21 15:46:31,413 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 17:12:38] 2025-11-21 15:46:31,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 17:12:38] 2025-11-21 15:46:31,430 | INFO     | fitting pss+swap vs Time
[2025-11-21 17:12:38] 2025-11-21 15:46:31,432 | INFO     | sum of square deviations: 329062219522.9373
[2025-11-21 17:12:38] 2025-11-21 15:46:31,452 | INFO     | sum of deviations: 932077726108.662
[2025-11-21 17:12:38] 2025-11-21 15:46:31,452 | INFO     | mean x: 1763708886.5078433
[2025-11-21 17:12:38] 2025-11-21 15:46:31,452 | INFO     | mean y: 2295077.6049019606
[2025-11-21 17:12:38] 2025-11-21 15:46:31,452 | INFO     | intersect: -4993458524.364836
[2025-11-21 17:12:38] 2025-11-21 15:46:31,453 | INFO     | chi2: 4.2966476245029
[2025-11-21 17:12:38] 2025-11-21 15:46:31,455 | INFO     | sum of square deviations: 324246745627.93695
[2025-11-21 17:12:38] 2025-11-21 15:46:31,474 | INFO     | sum of deviations: 1150633565591.8306
[2025-11-21 17:12:38] 2025-11-21 15:46:31,474 | INFO     | mean x: 1763708734.0078819
[2025-11-21 17:12:38] 2025-11-21 15:46:31,474 | INFO     | mean y: 2301993.6463054186
[2025-11-21 17:12:38] 2025-11-21 15:46:31,475 | INFO     | intersect: -6256457721.418332
[2025-11-21 17:12:38] 2025-11-21 15:46:31,476 | INFO     | chi2: 2.0875963167254508
[2025-11-21 17:12:38] 2025-11-21 15:46:31,476 | INFO     | current chi2=2.0875963167254508 (change=51.41336923185609 %)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,477 | INFO     | sum of square deviations: 319478481920.4369
[2025-11-21 17:12:38] 2025-11-21 15:46:31,496 | INFO     | sum of deviations: 1192740974766.7827
[2025-11-21 17:12:38] 2025-11-21 15:46:31,497 | INFO     | mean x: 1763708581.5079207
[2025-11-21 17:12:38] 2025-11-21 15:46:31,497 | INFO     | mean y: 2303337.0900990097
[2025-11-21 17:12:38] 2025-11-21 15:46:31,497 | INFO     | intersect: -6582326338.3325815
[2025-11-21 17:12:38] 2025-11-21 15:46:31,498 | INFO     | chi2: 1.9142465342880908
[2025-11-21 17:12:38] 2025-11-21 15:46:31,499 | INFO     | current chi2=1.9142465342880908 (change=8.303798059448196 %)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,499 | INFO     | right removable region: 1009
[2025-11-21 17:12:38] 2025-11-21 15:46:31,500 | INFO     | sum of square deviations: 324246740747.93695
[2025-11-21 17:12:38] 2025-11-21 15:46:31,520 | INFO     | sum of deviations: 738489983049.9752
[2025-11-21 17:12:38] 2025-11-21 15:46:31,520 | INFO     | mean x: 1763709039.0078819
[2025-11-21 17:12:38] 2025-11-21 15:46:31,520 | INFO     | mean y: 2301199.2532019704
[2025-11-21 17:12:38] 2025-11-21 15:46:31,520 | INFO     | intersect: -4014644214.963135
[2025-11-21 17:12:38] 2025-11-21 15:46:31,521 | INFO     | chi2: 2.463809139202815
[2025-11-21 17:12:38] 2025-11-21 15:46:31,521 | INFO     | current chi2=2.463809139202815 (change=42.65740748316858 %)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,523 | INFO     | sum of square deviations: 319478472160.4368
[2025-11-21 17:12:38] 2025-11-21 15:46:31,542 | INFO     | sum of deviations: 707181349895.3478
[2025-11-21 17:12:38] 2025-11-21 15:46:31,542 | INFO     | mean x: 1763709191.5079207
[2025-11-21 17:12:38] 2025-11-21 15:46:31,542 | INFO     | mean y: 2302199.831683168
[2025-11-21 17:12:38] 2025-11-21 15:46:31,542 | INFO     | intersect: -3901755054.602191
[2025-11-21 17:12:38] 2025-11-21 15:46:31,544 | INFO     | chi2: 2.445828764907451
[2025-11-21 17:12:38] 2025-11-21 15:46:31,544 | INFO     | current chi2=2.445828764907451 (change=0.7297795112969602 %)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,544 | INFO     | left removable region: 20
[2025-11-21 17:12:38] 2025-11-21 15:46:31,545 | INFO     | sum of square deviations: 299962041605.9366
[2025-11-21 17:12:38] 2025-11-21 15:46:31,564 | INFO     | sum of deviations: 931265596021.7775
[2025-11-21 17:12:38] 2025-11-21 15:46:31,564 | INFO     | mean x: 1763709161.008089
[2025-11-21 17:12:38] 2025-11-21 15:46:31,564 | INFO     | mean y: 2311627.5278058643
[2025-11-21 17:12:38] 2025-11-21 15:46:31,564 | INFO     | intersect: -5473320069.875472
[2025-11-21 17:12:38] 2025-11-21 15:46:31,565 | INFO     | chi2: 0.05319468102417725
[2025-11-21 17:12:38] 2025-11-21 15:46:31,566 | INFO     | current memory leak: 3.10 B/s (using 989 data points, chi2=0.05)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | could have reported an average CPU frequency of 2707 MHz (38 samples)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | ..............................
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . Timing measurements:
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . get job = 0 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . initial setup = 1 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . payload setup = 6 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . stage-in = 0 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . payload execution = 62173 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . stage-out = 2 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | . log creation = 0 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,567 | INFO     | ..............................
[2025-11-21 17:12:38] 2025-11-21 15:46:31,659 | INFO     | 
[2025-11-21 17:12:38] 2025-11-21 15:46:31,659 | INFO     | job summary report
[2025-11-21 17:12:38] 2025-11-21 15:46:31,659 | INFO     | --------------------------------------------------
[2025-11-21 17:12:38] 2025-11-21 15:46:31,659 | INFO     | PanDA job id: 6893847973
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | task id: 47523449
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | errors: (none)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | pilot state: finished 
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | transexitcode: 0
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | exeerrorcode: 0
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | exeerrordiag: 
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | exitcode: 0
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | exitmsg: OK
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | cpuconsumptiontime: 245320 s
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | nevents: 1000
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | neventsw: 0
[2025-11-21 17:12:38] 2025-11-21 15:46:31,660 | INFO     | pid: 1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:31,661 | INFO     | pgrp: 1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:31,661 | INFO     | corecount: 4
[2025-11-21 17:12:38] 2025-11-21 15:46:31,661 | INFO     | event service: False
[2025-11-21 17:12:38] 2025-11-21 15:46:31,661 | INFO     | sizes: {0: 2298818, 5: 2299080, 11: 2299136, 62184: 2352121, 62188: 2361137, 62191: 2361193, 62196: 2361567}
[2025-11-21 17:12:38] 2025-11-21 15:46:31,662 | INFO     | --------------------------------------------------
[2025-11-21 17:12:38] 2025-11-21 15:46:31,662 | INFO     | 
[2025-11-21 17:12:38] 2025-11-21 15:46:31,662 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/1
[2025-11-21 17:12:38] 2025-11-21 15:46:31,681 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,681 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,683 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,683 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 17:12:38] 2025-11-21 15:46:31,683 | INFO     | job 6893847973 has completed (purged errors)
[2025-11-21 17:12:38] 2025-11-21 15:46:31,683 | INFO     | overall cleanup function is called
[2025-11-21 17:12:38] 2025-11-21 15:46:32,696 | INFO     | --- collectZombieJob: --- 10, [1798396]
[2025-11-21 17:12:38] 2025-11-21 15:46:32,696 | INFO     | zombie collector waiting for pid 1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:32,697 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 17:12:38] 2025-11-21 15:46:32,697 | INFO     | collected zombie processes
[2025-11-21 17:12:38] 2025-11-21 15:46:32,697 | INFO     | will attempt to kill all subprocesses of pid=1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:33,084 | INFO     | process IDs to be killed: [1798396] (in reverse order)
[2025-11-21 17:12:38] 2025-11-21 15:46:33,200 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 17:12:38] 2025-11-21 15:46:33,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 17:12:38] 2025-11-21 15:46:33,215 | INFO     | did not find any defunct processes belonging to 1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:33,230 | INFO     | did not find any defunct processes belonging to 1798396
[2025-11-21 17:12:38] 2025-11-21 15:46:33,232 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 17:12:38] 2025-11-21 15:46:33,232 | INFO     | ready for new job
[2025-11-21 17:12:38] 2025-11-21 15:46:33,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 17:12:38] 2025-11-21 15:46:33,237 | INFO     | ***************************************
[2025-11-21 17:12:38] 2025-11-21 15:46:33,237 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 17:12:38] 2025-11-21 15:46:33,237 | INFO     | ***************************************
[2025-11-21 17:12:38] 2025-11-21 15:46:33,237 | INFO     | 
[2025-11-21 17:12:38] 2025-11-21 15:46:33,241 | INFO     | architecture information:
[2025-11-21 17:12:38] 2025-11-21 15:46:33,241 | INFO     | executing command: cat /etc/os-release
[2025-11-21 17:12:38] 2025-11-21 15:46:33,256 | INFO     | cat /etc/os-release:
[2025-11-21 17:12:38] NAME="CentOS Linux"
[2025-11-21 17:12:38] VERSION="7 (Core)"
[2025-11-21 17:12:38] ID="centos"
[2025-11-21 17:12:38] ID_LIKE="rhel fedora"
[2025-11-21 17:12:38] VERSION_ID="7"
[2025-11-21 17:12:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 17:12:38] ANSI_COLOR="0;31"
[2025-11-21 17:12:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 17:12:38] HOME_URL="https://www.centos.org/"
[2025-11-21 17:12:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 17:12:38] 
[2025-11-21 17:12:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 17:12:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 17:12:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 17:12:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 17:12:38] 
[2025-11-21 17:12:38] 2025-11-21 15:46:33,256 | INFO     | ***************************************
[2025-11-21 17:12:38] 2025-11-21 15:46:33,759 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/1
[2025-11-21 17:12:38] 2025-11-21 15:46:33,776 | INFO     | sufficient remaining disk space (667563327488 B)
[2025-11-21 17:12:38] 2025-11-21 15:46:33,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 17:12:38] 2025-11-21 15:46:33,776 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 17:12:38] 2025-11-21 15:46:33,776 | INFO     | update_server=False
[2025-11-21 17:12:38] 2025-11-21 15:46:33,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 17:12:38] 2025-11-21 15:46:33,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:12:38] 2025-11-21 15:46:33,778 | INFO     | aborting loop
[2025-11-21 17:12:38] 2025-11-21 15:46:33,931 | INFO     | all data control threads have been joined
[2025-11-21 17:12:38] 2025-11-21 15:46:33,932 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 17:12:38] 2025-11-21 15:46:34,720 | INFO     | all payload control threads have been joined
[2025-11-21 17:12:38] 2025-11-21 15:46:34,779 | INFO     | [job] job monitor thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:34,781 | INFO     | [job] retrieve thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:34,854 | INFO     | all job control threads have been joined
[2025-11-21 17:12:38] 2025-11-21 15:46:34,932 | INFO     | [data] control thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:34,959 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,138 | INFO     | [payload] validate_post thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,223 | INFO     | [data] copytool_in thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,507 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,726 | INFO     | [payload] control thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,860 | INFO     | [job] control thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,890 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:35,936 | INFO     | [data] copytool_out thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:36,202 | INFO     | [job] validate thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:36,228 | INFO     | [payload] failed_post thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:36,670 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:12:38] 2025-11-21 15:46:36,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 17:12:38] 2025-11-21 15:46:37,675 | INFO     | [job] queue monitor thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:40,964 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:46:44,746 | INFO     | job.realtimelogging is not enabled
[2025-11-21 17:12:38] 2025-11-21 15:46:45,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 17:12:38] 2025-11-21 15:47:03,494 | INFO     | PID=1791211 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 17:12:38] 2025-11-21 15:47:03,494 | INFO     | .. there are 4 such processes running
[2025-11-21 17:12:38] 2025-11-21 15:47:03,494 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 17:12:38] 2025-11-21 15:47:03,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 17:12:38] 2025-11-21 15:47:03,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 17:12:38] 2025-11-21 15:47:22,448 | INFO     | [monitor] cgroup control has ended
[2025-11-21 17:12:38] 2025-11-21 15:47:23,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22429654685504)>', '<ExcThread(monitor, started 22429420197632)>']
[2025-11-21 17:12:38] 2025-11-21 15:47:23,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 17:12:38] 2025-11-21 15:47:23,568 | INFO     | [monitor] control thread has ended
[2025-11-21 17:12:38] 2025-11-21 15:47:28,032 | INFO     | all workflow threads have been joined
[2025-11-21 17:12:38] 2025-11-21 15:47:28,032 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 17:12:38] 2025-11-21 15:47:28,032 | INFO     | traces error code: 0
[2025-11-21 17:12:38] 2025-11-21 15:47:28,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 17:12:38] 2025-11-21 15:47:28,180 [wrapper] ==== pilot stdout END ====
[2025-11-21 17:12:38] 2025-11-21 15:47:28,183 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 17:12:38] 2025-11-21 15:47:28,185 [wrapper] pilotpid: 1791211
[2025-11-21 17:12:38] 2025-11-21 15:47:28,189 [wrapper] Pilot exit status: 0
[2025-11-21 17:12:38] 2025-11-21 15:47:28,198 [wrapper] pandaids: 6893847973
[2025-11-21 17:12:38] 2025-11-21 15:47:28,278 [wrapper] cleanup supervisor_pilot 2785528 1791212
[2025-11-21 17:12:38] 2025-11-21 15:47:28,281 [wrapper] Test setup, not cleaning
[2025-11-21 17:12:38] 2025-11-21 15:47:28,284 [wrapper] apfmon messages muted
[2025-11-21 17:12:38] 2025-11-21 15:47:28,287 [wrapper] ==== wrapper stdout END ====
[2025-11-21 17:12:38] 2025-11-21 15:47:28,290 [wrapper] ==== wrapper stderr END ====
[2025-11-21 17:12:38]  *** Error codes and diagnostics ***
[2025-11-21 17:12:38]     "exeErrorCode": 0,
[2025-11-21 17:12:38]     "exeErrorDiag": "",
[2025-11-21 17:12:38]     "pilotErrorCode": 0,
[2025-11-21 17:12:38]     "pilotErrorDiag": "",
[2025-11-21 17:12:38]  *** Listing of results directory ***
[2025-11-21 17:12:38] total 1332904
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-21 17:12:38] -rwx------ 1 boinc boinc     36292 Nov 20 11:24 runpilot2-wrapper.sh
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:25 queuedata.json
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 17:12:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:18 run_atlas
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:18 job.xml
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc 410435925 Nov 20 23:29 EVNT.47493127._000249.pool.root.1
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc      6634 Nov 20 23:29 init_data.xml
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:29 start_atlas.sh
[2025-11-21 17:12:38] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:29 shared
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc    590100 Nov 20 23:29 input.tar.gz
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:29 boinc_lockfile
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc      2786 Nov 20 23:29 pandaJob.out
[2025-11-21 17:12:38] -rw------- 1 boinc boinc    989825 Nov 20 23:29 agis_schedconf.cvmfs.json
[2025-11-21 17:12:38] drwx------ 5 boinc boinc      4096 Nov 20 23:29 pilot3
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc       531 Nov 21 16:37 boinc_task_state.xml
[2025-11-21 17:12:38] -rw------- 1 boinc boinc 929580620 Nov 21 16:45 HITS.47523449._002487.pool.root.1
[2025-11-21 17:12:38] -rw------- 1 boinc boinc      1043 Nov 21 16:46 memory_monitor_summary.json
[2025-11-21 17:12:38] -rw------- 1 boinc boinc        95 Nov 21 16:46 pilot_heartbeat.json
[2025-11-21 17:12:38] -rw------- 1 boinc boinc   1526164 Nov 21 16:46 agis_ddmendpoints.agis.ALL.json
[2025-11-21 17:12:38] -rw------- 1 boinc boinc   1745393 Nov 21 16:46 log.47523449._002487.job.log.tgz.1
[2025-11-21 17:12:38] -rw------- 1 boinc boinc      8642 Nov 21 16:46 heartbeat.json
[2025-11-21 17:12:38] -rw------- 1 boinc boinc      4905 Nov 21 16:47 pilotlog.txt
[2025-11-21 17:12:38] -rw------- 1 boinc boinc   8726592 Nov 21 16:47 log.47523449._002487.job.log.1
[2025-11-21 17:12:38] -rw------- 1 boinc boinc       353 Nov 21 16:47 output.list
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc       620 Nov 21 16:47 runtime_log
[2025-11-21 17:12:38] -rw------- 1 boinc boinc  10496000 Nov 21 16:47 result.tar.gz
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc      9206 Nov 21 16:47 runtime_log.err
[2025-11-21 17:12:38] -rw------- 1 boinc boinc       672 Nov 21 16:47 qnGLDmp0Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJSHKDmx6B8em.diag
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc        28 Nov 21 17:12 wrapper_checkpoint.txt
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc      8192 Nov 21 17:12 boinc_mmap_file
[2025-11-21 17:12:38] -rw-r--r-- 1 boinc boinc     21082 Nov 21 17:12 stderr.txt
[2025-11-21 17:12:38] HITS file was successfully produced:
[2025-11-21 17:12:38] -rw------- 1 boinc boinc 929580620 Nov 21 16:45 shared/HITS.pool.root.1
[2025-11-21 17:12:38]  *** Contents of shared directory: ***
[2025-11-21 17:12:38] total 1319472
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc 410435925 Nov 20 23:29 ATLAS.root_0
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:29 start_atlas.sh
[2025-11-21 17:12:38] -rw-r--r-- 2 boinc boinc    590100 Nov 20 23:29 input.tar.gz
[2025-11-21 17:12:38] -rw------- 1 boinc boinc 929580620 Nov 21 16:45 HITS.pool.root.1
[2025-11-21 17:12:38] -rw------- 1 boinc boinc  10496000 Nov 21 16:47 result.tar.gz
17:12:40 (1787442): run_atlas exited; CPU time 247669.975993
17:12:40 (1787442): called boinc_finish(0)

</stderr_txt>
]]>

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