Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:09 (3602134): wrapper (7.7.26015): starting
00:20:09 (3602134): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 00:20:09] Arguments: --nthreads 4
[2025-11-21 00:20:09] Threads: 4
[2025-11-21 00:20:09] Checking for CVMFS
[2025-11-21 00:20:09] No cvmfs_config command found, will try listing directly
[2025-11-21 00:20:09] CVMFS is ok
[2025-11-21 00:20:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:20:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:20:09] Further information can be found at the LHC@home message board.
[2025-11-21 00:20:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:20:09] Checking for apptainer binary...
[2025-11-21 00:20:09] which: no apptainer in ((null))
[2025-11-21 00:20:09] apptainer is not installed, using version from CVMFS
[2025-11-21 00:20:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:20:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-21 00:20:10] apptainer works
[2025-11-21 00:20:10] Set ATHENA_PROC_NUMBER=4
[2025-11-21 00:20:10] Set ATHENA_CORE_NUMBER=4
[2025-11-21 00:20:10] Starting ATLAS job with PandaID=6893836465
[2025-11-21 00:20:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 17:33:33]  *** The last 200 lines of the pilot log: ***
[2025-11-21 17:33:33] 2025-11-21 16:21:43,312 | INFO     | extracted standard info from prmon json
[2025-11-21 17:33:33] 2025-11-21 16:21:43,312 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 17:33:33] 2025-11-21 16:21:43,312 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 17:33:33] 2025-11-21 16:21:43,334 | INFO     | fitting pss+swap vs Time
[2025-11-21 17:33:33] 2025-11-21 16:21:43,336 | INFO     | sum of square deviations: 312886006705.1603
[2025-11-21 17:33:33] 2025-11-21 16:21:43,377 | INFO     | sum of deviations: 735054646177.8994
[2025-11-21 17:33:33] 2025-11-21 16:21:43,377 | INFO     | mean x: 1763711490.1724825
[2025-11-21 17:33:33] 2025-11-21 16:21:43,377 | INFO     | mean y: 2275876.960119641
[2025-11-21 17:33:33] 2025-11-21 16:21:43,377 | INFO     | intersect: -4141163898.505072
[2025-11-21 17:33:33] 2025-11-21 16:21:43,378 | INFO     | chi2: 4.935864194304632
[2025-11-21 17:33:33] 2025-11-21 16:21:43,379 | INFO     | sum of square deviations: 308230148917.5111
[2025-11-21 17:33:33] 2025-11-21 16:21:43,416 | INFO     | sum of deviations: 969061348921.112
[2025-11-21 17:33:33] 2025-11-21 16:21:43,416 | INFO     | mean x: 1763711337.6733468
[2025-11-21 17:33:33] 2025-11-21 16:21:43,416 | INFO     | mean y: 2283536.5831663324
[2025-11-21 17:33:33] 2025-11-21 16:21:43,416 | INFO     | intersect: -5542743431.075976
[2025-11-21 17:33:33] 2025-11-21 16:21:43,417 | INFO     | chi2: 2.329315324823215
[2025-11-21 17:33:33] 2025-11-21 16:21:43,418 | INFO     | current chi2=2.329315324823215 (change=52.80835871637327 %)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,419 | INFO     | sum of square deviations: 303620649604.20734
[2025-11-21 17:33:33] 2025-11-21 16:21:43,471 | INFO     | sum of deviations: 983174981442.8376
[2025-11-21 17:33:33] 2025-11-21 16:21:43,471 | INFO     | mean x: 1763711185.1732125
[2025-11-21 17:33:33] 2025-11-21 16:21:43,471 | INFO     | mean y: 2284000.768378651
[2025-11-21 17:33:33] 2025-11-21 16:21:43,471 | INFO     | intersect: -5708910919.648423
[2025-11-21 17:33:33] 2025-11-21 16:21:43,472 | INFO     | chi2: 2.2544008705208474
[2025-11-21 17:33:33] 2025-11-21 16:21:43,473 | INFO     | current chi2=2.2544008705208474 (change=3.21615770540011 %)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,473 | INFO     | right removable region: 992
[2025-11-21 17:33:33] 2025-11-21 16:21:43,474 | INFO     | sum of square deviations: 308230043387.51105
[2025-11-21 17:33:33] 2025-11-21 16:21:43,527 | INFO     | sum of deviations: 532127097099.8874
[2025-11-21 17:33:33] 2025-11-21 16:21:43,527 | INFO     | mean x: 1763711642.6733468
[2025-11-21 17:33:33] 2025-11-21 16:21:43,527 | INFO     | mean y: 2282513.4168336676
[2025-11-21 17:33:33] 2025-11-21 16:21:43,528 | INFO     | intersect: -3042582115.0357637
[2025-11-21 17:33:33] 2025-11-21 16:21:43,529 | INFO     | chi2: 2.7686203980567843
[2025-11-21 17:33:33] 2025-11-21 16:21:43,529 | INFO     | current chi2=2.7686203980567843 (change=43.908092097602186 %)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,530 | INFO     | sum of square deviations: 303620499544.85944
[2025-11-21 17:33:33] 2025-11-21 16:21:43,568 | INFO     | sum of deviations: 505829254111.6588
[2025-11-21 17:33:33] 2025-11-21 16:21:43,568 | INFO     | mean x: 1763711795.1742196
[2025-11-21 17:33:33] 2025-11-21 16:21:43,568 | INFO     | mean y: 2283382.9788519638
[2025-11-21 17:33:33] 2025-11-21 16:21:43,569 | INFO     | intersect: -2936045956.305759
[2025-11-21 17:33:33] 2025-11-21 16:21:43,570 | INFO     | chi2: 2.755578277443099
[2025-11-21 17:33:33] 2025-11-21 16:21:43,570 | INFO     | current chi2=2.755578277443099 (change=0.4710692958427653 %)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,570 | INFO     | left removable region: 20
[2025-11-21 17:33:33] 2025-11-21 16:21:43,571 | INFO     | sum of square deviations: 284762239926.5638
[2025-11-21 17:33:33] 2025-11-21 16:21:43,606 | INFO     | sum of deviations: 720426552776.3944
[2025-11-21 17:33:33] 2025-11-21 16:21:43,609 | INFO     | mean x: 1763711764.6769547
[2025-11-21 17:33:33] 2025-11-21 16:21:43,609 | INFO     | mean y: 2292699.160493827
[2025-11-21 17:33:33] 2025-11-21 16:21:43,610 | INFO     | intersect: -4459762336.805884
[2025-11-21 17:33:33] 2025-11-21 16:21:43,611 | INFO     | chi2: 0.05470929072916196
[2025-11-21 17:33:33] 2025-11-21 16:21:43,611 | INFO     | current memory leak: 2.53 B/s (using 972 data points, chi2=0.05)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | could have reported an average CPU frequency of 2683 MHz (37 samples)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | ..............................
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | . Timing measurements:
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | . get job = 0 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | . initial setup = 1 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | . payload setup = 20 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,612 | INFO     | . stage-in = 0 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,613 | INFO     | . payload execution = 61162 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,613 | INFO     | . stage-out = 2 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,613 | INFO     | . log creation = 0 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,613 | INFO     | ..............................
[2025-11-21 17:33:33] 2025-11-21 16:21:43,754 | INFO     | 
[2025-11-21 17:33:33] 2025-11-21 16:21:43,754 | INFO     | job summary report
[2025-11-21 17:33:33] 2025-11-21 16:21:43,754 | INFO     | --------------------------------------------------
[2025-11-21 17:33:33] 2025-11-21 16:21:43,762 | INFO     | PanDA job id: 6893836465
[2025-11-21 17:33:33] 2025-11-21 16:21:43,762 | INFO     | task id: 47523449
[2025-11-21 17:33:33] 2025-11-21 16:21:43,762 | INFO     | errors: (none)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | pilot state: finished 
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | transexitcode: 0
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | exeerrorcode: 0
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | exeerrordiag: 
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | exitcode: 0
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | exitmsg: OK
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | cpuconsumptiontime: 228364 s
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | nevents: 1000
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | neventsw: 0
[2025-11-21 17:33:33] 2025-11-21 16:21:43,763 | INFO     | pid: 3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | pgrp: 3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | corecount: 4
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | event service: False
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | sizes: {0: 2298648, 1: 2298847, 12: 2298847, 18: 2299137, 23: 2299165, 61186: 2353726, 61187: 2353853, 61189: 2362927, 61193: 2362983, 61214: 2363229}
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | --------------------------------------------------
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | 
[2025-11-21 17:33:33] 2025-11-21 16:21:43,764 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/1
[2025-11-21 17:33:33] 2025-11-21 16:21:43,858 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,860 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 17:33:33] 2025-11-21 16:21:43,860 | INFO     | job 6893836465 has completed (purged errors)
[2025-11-21 17:33:33] 2025-11-21 16:21:43,860 | INFO     | overall cleanup function is called
[2025-11-21 17:33:33] 2025-11-21 16:21:44,329 | INFO     | PID=3606738 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 17:33:33] 2025-11-21 16:21:44,329 | INFO     | .. there are 11 such processes running
[2025-11-21 17:33:33] 2025-11-21 16:21:44,894 | INFO     | --- collectZombieJob: --- 10, [3614562]
[2025-11-21 17:33:33] 2025-11-21 16:21:44,895 | INFO     | zombie collector waiting for pid 3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:44,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 17:33:33] 2025-11-21 16:21:44,895 | INFO     | collected zombie processes
[2025-11-21 17:33:33] 2025-11-21 16:21:44,895 | INFO     | will attempt to kill all subprocesses of pid=3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:45,824 | INFO     | process IDs to be killed: [3614562] (in reverse order)
[2025-11-21 17:33:33] 2025-11-21 16:21:46,338 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 17:33:33] 2025-11-21 16:21:46,338 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 17:33:33] 2025-11-21 16:21:46,375 | INFO     | did not find any defunct processes belonging to 3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:46,413 | INFO     | did not find any defunct processes belonging to 3614562
[2025-11-21 17:33:33] 2025-11-21 16:21:46,414 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 17:33:33] 2025-11-21 16:21:46,414 | INFO     | ready for new job
[2025-11-21 17:33:33] 2025-11-21 16:21:46,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 17:33:33] 2025-11-21 16:21:46,420 | INFO     | ***************************************
[2025-11-21 17:33:33] 2025-11-21 16:21:46,420 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 17:33:33] 2025-11-21 16:21:46,420 | INFO     | ***************************************
[2025-11-21 17:33:33] 2025-11-21 16:21:46,420 | INFO     | 
[2025-11-21 17:33:33] 2025-11-21 16:21:46,432 | INFO     | architecture information:
[2025-11-21 17:33:33] 2025-11-21 16:21:46,433 | INFO     | executing command: cat /etc/os-release
[2025-11-21 17:33:33] 2025-11-21 16:21:46,457 | INFO     | cat /etc/os-release:
[2025-11-21 17:33:33] NAME="CentOS Linux"
[2025-11-21 17:33:33] VERSION="7 (Core)"
[2025-11-21 17:33:33] ID="centos"
[2025-11-21 17:33:33] ID_LIKE="rhel fedora"
[2025-11-21 17:33:33] VERSION_ID="7"
[2025-11-21 17:33:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 17:33:33] ANSI_COLOR="0;31"
[2025-11-21 17:33:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 17:33:33] HOME_URL="https://www.centos.org/"
[2025-11-21 17:33:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 17:33:33] 
[2025-11-21 17:33:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 17:33:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 17:33:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 17:33:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 17:33:33] 
[2025-11-21 17:33:33] 2025-11-21 16:21:46,457 | INFO     | ***************************************
[2025-11-21 17:33:33] 2025-11-21 16:21:46,959 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/1
[2025-11-21 17:33:33] 2025-11-21 16:21:46,982 | INFO     | sufficient remaining disk space (3291202191360 B)
[2025-11-21 17:33:33] 2025-11-21 16:21:46,982 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 17:33:33] 2025-11-21 16:21:46,982 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 17:33:33] 2025-11-21 16:21:46,982 | INFO     | update_server=False
[2025-11-21 17:33:33] 2025-11-21 16:21:46,982 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 17:33:33] 2025-11-21 16:21:46,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 17:33:33] 2025-11-21 16:21:47,073 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 17:33:33] 2025-11-21 16:21:47,291 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 17:33:33] 2025-11-21 16:21:47,292 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 17:33:33] 2025-11-21 16:21:47,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:33:33] 2025-11-21 16:21:47,292 | INFO     | will abort loop
[2025-11-21 17:33:33] 2025-11-21 16:21:47,879 | INFO     | all data control threads have been joined
[2025-11-21 17:33:33] 2025-11-21 16:21:47,904 | INFO     | all payload control threads have been joined
[2025-11-21 17:33:33] 2025-11-21 16:21:47,984 | INFO     | all job control threads have been joined
[2025-11-21 17:33:33] 2025-11-21 16:21:47,987 | INFO     | [job] retrieve thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,036 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,102 | INFO     | [job] validate thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,296 | INFO     | [job] job monitor thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,454 | INFO     | [payload] failed_post thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,564 | INFO     | [data] copytool_in thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:33:33] 2025-11-21 16:21:48,775 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,825 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,886 | INFO     | [data] control thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,910 | INFO     | [payload] control thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:48,990 | INFO     | [job] control thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:49,079 | INFO     | [data] copytool_out thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:49,501 | INFO     | [payload] validate_post thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:49,768 | INFO     | [job] queue monitor thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:51,012 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:21:58,035 | INFO     | job.realtimelogging is not enabled
[2025-11-21 17:33:33] 2025-11-21 16:21:59,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 17:33:33] 2025-11-21 16:22:15,417 | INFO     | 61259s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 17:33:33] 2025-11-21 16:22:17,628 | INFO     | PID=3606738 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 17:33:33] 2025-11-21 16:22:17,628 | INFO     | .. there are 11 such processes running
[2025-11-21 17:33:33] 2025-11-21 16:22:17,628 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 17:33:33] 2025-11-21 16:22:17,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 17:33:33] 2025-11-21 16:22:17,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 17:33:33] 2025-11-21 16:22:31,828 | INFO     | [monitor] cgroup control has ended
[2025-11-21 17:33:33] 2025-11-21 16:22:32,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23023837304640)>', '<ExcThread(monitor, started 23023597876992)>']
[2025-11-21 17:33:33] 2025-11-21 16:22:32,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 17:33:33] 2025-11-21 16:22:32,708 | INFO     | [monitor] control thread has ended
[2025-11-21 17:33:33] 2025-11-21 16:22:37,639 | INFO     | all workflow threads have been joined
[2025-11-21 17:33:33] 2025-11-21 16:22:37,640 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 17:33:33] 2025-11-21 16:22:37,640 | INFO     | traces error code: 0
[2025-11-21 17:33:33] 2025-11-21 16:22:37,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 17:33:33] 2025-11-21 16:22:37,786 [wrapper] ==== pilot stdout END ====
[2025-11-21 17:33:33] 2025-11-21 16:22:37,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 17:33:33] 2025-11-21 16:22:37,811 [wrapper] pilotpid: 3606738
[2025-11-21 17:33:33] 2025-11-21 16:22:37,819 [wrapper] Pilot exit status: 0
[2025-11-21 17:33:33] 2025-11-21 16:22:37,907 [wrapper] pandaids: 6893836465
[2025-11-21 17:33:33] 2025-11-21 16:22:38,126 [wrapper] cleanup supervisor_pilot 1011821 3606739
[2025-11-21 17:33:33] 2025-11-21 16:22:38,130 [wrapper] Test setup, not cleaning
[2025-11-21 17:33:33] 2025-11-21 16:22:38,144 [wrapper] apfmon messages muted
[2025-11-21 17:33:33] 2025-11-21 16:22:38,164 [wrapper] ==== wrapper stdout END ====
[2025-11-21 17:33:33] 2025-11-21 16:22:38,184 [wrapper] ==== wrapper stderr END ====
[2025-11-21 17:33:33]  *** Error codes and diagnostics ***
[2025-11-21 17:33:33]     "exeErrorCode": 0,
[2025-11-21 17:33:33]     "exeErrorDiag": "",
[2025-11-21 17:33:33]     "pilotErrorCode": 0,
[2025-11-21 17:33:33]     "pilotErrorDiag": "",
[2025-11-21 17:33:33]  *** Listing of results directory ***
[2025-11-21 17:33:33] total 1328988
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-21 17:33:33] -rwx------ 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 17:33:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:06 run_atlas
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:06 job.xml
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc 411091787 Nov 21 00:20 EVNT.47493127._000105.pool.root.1
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc      6687 Nov 21 00:20 init_data.xml
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:20 start_atlas.sh
[2025-11-21 17:33:33] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:20 shared
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc    590100 Nov 21 00:20 input.tar.gz
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:20 boinc_lockfile
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc      2786 Nov 21 00:20 pandaJob.out
[2025-11-21 17:33:33] -rw------- 1 boinc boinc    989817 Nov 21 00:20 agis_schedconf.cvmfs.json
[2025-11-21 17:33:33] drwx------ 5 boinc boinc      4096 Nov 21 00:20 pilot3
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc       532 Nov 21 17:14 boinc_task_state.xml
[2025-11-21 17:33:33] -rw------- 1 boinc boinc 926219165 Nov 21 17:20 HITS.47523449._001044.pool.root.1
[2025-11-21 17:33:33] -rw------- 1 boinc boinc      1038 Nov 21 17:21 memory_monitor_summary.json
[2025-11-21 17:33:33] -rw------- 1 boinc boinc   1526164 Nov 21 17:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 17:33:33] -rw------- 1 boinc boinc   1708806 Nov 21 17:21 log.47523449._001044.job.log.tgz.1
[2025-11-21 17:33:33] -rw------- 1 boinc boinc      8594 Nov 21 17:21 heartbeat.json
[2025-11-21 17:33:33] -rw------- 1 boinc boinc        95 Nov 21 17:21 pilot_heartbeat.json
[2025-11-21 17:33:33] -rw------- 1 boinc boinc      5210 Nov 21 17:22 pilotlog.txt
[2025-11-21 17:33:33] -rw------- 1 boinc boinc   8114908 Nov 21 17:22 log.47523449._001044.job.log.1
[2025-11-21 17:33:33] -rw------- 1 boinc boinc       353 Nov 21 17:22 output.list
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc       620 Nov 21 17:22 runtime_log
[2025-11-21 17:33:33] -rw------- 1 boinc boinc   9840640 Nov 21 17:22 result.tar.gz
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc      9223 Nov 21 17:22 runtime_log.err
[2025-11-21 17:33:33] -rw------- 1 boinc boinc       669 Nov 21 17:22 JsYNDm2uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGIHKDmaZnwUm.diag
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc        28 Nov 21 17:33 wrapper_checkpoint.txt
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc      8192 Nov 21 17:33 boinc_mmap_file
[2025-11-21 17:33:33] -rw-r--r-- 1 boinc boinc     21154 Nov 21 17:33 stderr.txt
[2025-11-21 17:33:33] HITS file was successfully produced:
[2025-11-21 17:33:33] -rw------- 1 boinc boinc 926219165 Nov 21 17:20 shared/HITS.pool.root.1
[2025-11-21 17:33:33]  *** Contents of shared directory: ***
[2025-11-21 17:33:33] total 1316188
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc 411091787 Nov 21 00:20 ATLAS.root_0
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc     15847 Nov 21 00:20 start_atlas.sh
[2025-11-21 17:33:33] -rw-r--r-- 2 boinc boinc    590100 Nov 21 00:20 input.tar.gz
[2025-11-21 17:33:33] -rw------- 1 boinc boinc 926219165 Nov 21 17:20 HITS.pool.root.1
[2025-11-21 17:33:33] -rw------- 1 boinc boinc   9840640 Nov 21 17:22 result.tar.gz
17:33:35 (3602134): run_atlas exited; CPU time 231380.286302
17:33:35 (3602134): called boinc_finish(0)

</stderr_txt>
]]>

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