Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:08:32 (2372189): wrapper (7.7.26015): starting
22:08:32 (2372189): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 22:08:32] Arguments: --nthreads 3
[2025-11-20 22:08:32] Threads: 3
[2025-11-20 22:08:32] Checking for CVMFS
[2025-11-20 22:08:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:08:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:08:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:08:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:08:32] 2.9.2.0 16720 495 68388 153088 1 88 34405804 36864000 0 130560 0 7078662 99.999 9613 6755 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 22:08:32] CVMFS is ok
[2025-11-20 22:08:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:08:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:08:32] Further information can be found at the LHC@home message board.
[2025-11-20 22:08:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:08:32] Checking for apptainer binary...
[2025-11-20 22:08:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:08:32] Running /usr/bin/apptainer --version
[2025-11-20 22:08:32] apptainer version 1.4.1-1.1
[2025-11-20 22:08:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:08:32] thA335
[2025-11-20 22:08:32] apptainer works
[2025-11-20 22:08:33] Set ATHENA_PROC_NUMBER=3
[2025-11-20 22:08:33] Set ATHENA_CORE_NUMBER=3
[2025-11-20 22:08:33] Starting ATLAS job with PandaID=6893855441
[2025-11-20 22:08:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:12:49]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:12:49] ID="centos"
[2025-11-20 22:12:49] ID_LIKE="rhel fedora"
[2025-11-20 22:12:49] VERSION_ID="7"
[2025-11-20 22:12:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:12:49] ANSI_COLOR="0;31"
[2025-11-20 22:12:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:12:49] HOME_URL="https://www.centos.org/"
[2025-11-20 22:12:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:12:49] 
[2025-11-20 22:12:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:12:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:12:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:12:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:12:49] 
[2025-11-20 22:12:49] 2025-11-20 21:11:57,919 | INFO     | ***************************************
[2025-11-20 22:12:49] 2025-11-20 21:11:58,422 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | INFO     | sufficient remaining disk space (827238383616 B)
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | INFO     | update_server=False
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:12:49] 2025-11-20 21:11:58,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:12:49] 2025-11-20 21:11:58,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:12:49] 2025-11-20 21:11:58,908 | INFO     | aborting loop
[2025-11-20 22:12:49] 2025-11-20 21:11:58,931 | INFO     | all job control threads have been joined
[2025-11-20 22:12:49] 2025-11-20 21:11:59,188 | INFO     | all data control threads have been joined
[2025-11-20 22:12:49] 2025-11-20 21:11:59,439 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,442 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,492 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,716 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,819 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,892 | INFO     | all payload control threads have been joined
[2025-11-20 22:12:49] 2025-11-20 21:11:59,914 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:11:59,937 | INFO     | [job] control thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:12:49] 2025-11-20 21:12:00,194 | INFO     | [data] control thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,396 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,443 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,610 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,846 | INFO     | [job] validate thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,898 | INFO     | [payload] control thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:00,937 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:04,067 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:12:49] 2025-11-20 21:12:29,450 | INFO     | PID=2375913 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 22:12:49] 2025-11-20 21:12:29,450 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:12:49] 2025-11-20 21:12:29,450 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:12:49] 2025-11-20 21:12:29,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:12:49] 2025-11-20 21:12:42,609 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:12:49] 2025-11-20 21:12:44,023 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327679973184)>', '<ExcThread(monitor, started 140327398639360)>']
[2025-11-20 22:12:49] 2025-11-20 21:12:44,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:12:49] 2025-11-20 21:12:44,530 | INFO     | [monitor] control thread has ended
[2025-11-20 22:12:49] 2025-11-20 21:12:49,030 | INFO     | all workflow threads have been joined
[2025-11-20 22:12:49] 2025-11-20 21:12:49,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:12:49] 2025-11-20 21:12:49,031 | INFO     | traces error code: 0
[2025-11-20 22:12:49] 2025-11-20 21:12:49,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:12:49] 2025-11-20 21:12:49,075 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:12:49] 2025-11-20 21:12:49,078 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:12:49] 2025-11-20 21:12:49,081 [wrapper] pilotpid: 2375913
[2025-11-20 22:12:49] 2025-11-20 21:12:49,084 [wrapper] Pilot exit status: 0
[2025-11-20 22:12:49] 2025-11-20 21:12:49,091 [wrapper] pandaids: 6893855441
[2025-11-20 22:12:49] 2025-11-20 21:12:49,108 [wrapper] cleanup supervisor_pilot 2375919 2375914
[2025-11-20 22:12:49] 2025-11-20 21:12:49,111 [wrapper] Test setup, not cleaning
[2025-11-20 22:12:49] 2025-11-20 21:12:49,114 [wrapper] apfmon messages muted
[2025-11-20 22:12:49] 2025-11-20 21:12:49,116 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:12:49] 2025-11-20 21:12:49,118 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:12:49]  *** Error codes and diagnostics ***
[2025-11-20 22:12:49]     "exeErrorCode": 65,
[2025-11-20 22:12:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 22:12:49]     "pilotErrorCode": 1305,
[2025-11-20 22:12:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 22:12:49]  *** Listing of results directory ***
[2025-11-20 22:12:49] total 403812
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-20 22:12:49] -rwx------ 1 boinc boinc     36292 Nov 20 13:35 runpilot2-wrapper.sh
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:35 queuedata.json
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:12:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:08 run_atlas
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:08 job.xml
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc 409308430 Nov 20 22:08 EVNT.47493127._000443.pool.root.1
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc    590094 Nov 20 22:08 input.tar.gz
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc     15847 Nov 20 22:08 start_atlas.sh
[2025-11-20 22:12:49] drwxrwx--x 2 boinc boinc      4096 Nov 20 22:08 shared
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc         0 Nov 20 22:08 boinc_setup_complete
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      6194 Nov 20 22:08 init_data.xml
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc         0 Nov 20 22:08 boinc_lockfile
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      2786 Nov 20 22:08 pandaJob.out
[2025-11-20 22:12:49] -rw------- 1 boinc boinc    989440 Nov 20 22:08 agis_schedconf.cvmfs.json
[2025-11-20 22:12:49] -rw------- 1 boinc boinc   1526164 Nov 20 22:08 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:12:49] drwx------ 5 boinc boinc      4096 Nov 20 22:08 pilot3
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc       523 Nov 20 22:09 boinc_task_state.xml
[2025-11-20 22:12:49] -rw------- 1 boinc boinc       981 Nov 20 22:09 memory_monitor_summary.json
[2025-11-20 22:12:49] -rw------- 1 boinc boinc     55892 Nov 20 22:09 log.47523449._004422.job.log.tgz.1
[2025-11-20 22:12:49] -rw------- 1 boinc boinc        95 Nov 20 22:11 pilot_heartbeat.json
[2025-11-20 22:12:49] -rw------- 1 boinc boinc      8398 Nov 20 22:11 heartbeat.json
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      8192 Nov 20 22:12 boinc_mmap_file
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc        23 Nov 20 22:12 wrapper_checkpoint.txt
[2025-11-20 22:12:49] -rw------- 1 boinc boinc      4752 Nov 20 22:12 pilotlog.txt
[2025-11-20 22:12:49] -rw------- 1 boinc boinc     92301 Nov 20 22:12 log.47523449._004422.job.log.1
[2025-11-20 22:12:49] -rw------- 1 boinc boinc       186 Nov 20 22:12 output.list
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc       620 Nov 20 22:12 runtime_log
[2025-11-20 22:12:49] -rw------- 1 boinc boinc    163840 Nov 20 22:12 result.tar.gz
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      8744 Nov 20 22:12 runtime_log.err
[2025-11-20 22:12:49] -rw------- 1 boinc boinc       649 Nov 20 22:12 09zNDmT3Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0cGKDmN5bmUn.diag
[2025-11-20 22:12:49] -rw-r--r-- 1 boinc boinc      8995 Nov 20 22:12 stderr.txt
[2025-11-20 22:12:49] No HITS result produced
[2025-11-20 22:12:49]  *** Contents of shared directory: ***
[2025-11-20 22:12:49] total 400476
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc 409308430 Nov 20 22:08 ATLAS.root_0
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc    590094 Nov 20 22:08 input.tar.gz
[2025-11-20 22:12:49] -rw-r--r-- 2 boinc boinc     15847 Nov 20 22:08 start_atlas.sh
[2025-11-20 22:12:49] -rw------- 1 boinc boinc    163840 Nov 20 22:12 result.tar.gz
22:12:51 (2372189): run_atlas exited; CPU time 30.573690
22:12:51 (2372189): called boinc_finish(0)

</stderr_txt>
]]>

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