Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:52:51 (1853714): wrapper (7.7.26015): starting
12:52:51 (1853714): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 12:52:51] Arguments: --nthreads 8
[2025-11-20 12:52:51] Threads: 8
[2025-11-20 12:52:51] Checking for CVMFS
[2025-11-20 12:52:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:52:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:52:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:52:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:52:52] 2.11.3.0 3082052 20249 229012 153095 3 450 41419219 45568001 9456 130560 0 147119732 99.817 80690915 21304 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 12:52:52] CVMFS is ok
[2025-11-20 12:52:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:52:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:52:52] Further information can be found at the LHC@home message board.
[2025-11-20 12:52:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:52:52] Checking for apptainer binary...
[2025-11-20 12:52:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:52:52] Running /usr/bin/apptainer --version
[2025-11-20 12:52:52] apptainer version 1.4.1-1.el9
[2025-11-20 12:52:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:52:53] wns0019.triumf.lcg
[2025-11-20 12:52:53] apptainer works
[2025-11-20 12:52:53] Set ATHENA_PROC_NUMBER=8
[2025-11-20 12:52:53] Set ATHENA_CORE_NUMBER=8
[2025-11-20 12:52:53] Starting ATLAS job with PandaID=6893874142
[2025-11-20 12:52:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 13:01:24]  *** The last 200 lines of the pilot log: ***
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | WARNING  | wrong length of table data, x=[1763672038.0, 1763672099.0, 1763672160.0, 1763672221.0, 1763672282.0], y=[1607.0, 566100.0, 876305.0, 415796.0, 733848.0] (must be s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | . Timing measurements:
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . get job = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . initial setup = 4 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload setup = 7 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-in = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload execution = 267 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-out = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . log creation = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893874142/pilotlog.txt
[2025-11-20 13:01:24] 2025-11-20 21:00:31,096 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 13:01:24] - Log from pilotlog.txt -
[2025-11-20 13:01:24] 2025-11-20 21:00:31,078 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893874142/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | INFO     | extracted standard info from prmon json
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | WARNING  | wrong length of table data, x=[1763672038.0, 1763672099.0, 1763672160.0, 1763672221.0, 1763672282.0], y=[1607.0, 566100.0, 876305.0, 415796.0, 733848.0] (must be s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | . Timing measurements:
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . get job = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . initial setup = 4 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload setup = 7 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-in = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload execution = 267 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-out = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . log creation = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893874142/pilotlog.txt
[2025-11-20 13:01:24] 2025-11-20 21:00:31,096 | WARNING  | 
[2025-11-20 13:01:24] [begin log extracts]
[2025-11-20 13:01:24] - Log from pilotlog.txt -
[2025-11-20 13:01:24] 2025-11-20 21:00:31,078 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893874142/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | INFO     | extracted standard info from prmon json
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 13:01:24] 2025-11-20 21:00:31,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | WARNING  | wrong length of table data, x=[1763672038.0, 1763672099.0, 1763672160.0, 1763672221.0, 1763672282.0], y=[1607.0, 566100.0, 876305.0, 415796.0, 733848.0] (must be s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,080 | INFO     | . Timing measurements:
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . get job = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . initial setup = 4 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload setup = 7 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-in = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . payload execution = 267 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . stage-out = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | . log creation = 0 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | ..............................
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 13:01:24] 2025-11-20 21:00:31,081 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893874142/pilotlog.txt
[2025-11-20 13:01:24] [end log extracts]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,096 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,097 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 13:01:24] 2025-11-20 21:00:31,162 | INFO     | 
[2025-11-20 13:01:24] 2025-11-20 21:00:31,162 | INFO     | job summary report
[2025-11-20 13:01:24] 2025-11-20 21:00:31,162 | INFO     | --------------------------------------------------
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | PanDA job id: 6893874142
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | task id: 47523449
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 12:58:11,982 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | pilot state: failed 
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | transexitcode: 65
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | exeerrorcode: 65
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | exitcode: 65
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | cpuconsumptiontime: 50 s
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | nevents: 0
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | neventsw: 0
[2025-11-20 13:01:24] 2025-11-20 21:00:31,163 | INFO     | pid: 1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | pgrp: 1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | corecount: 8
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | event service: False
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | sizes: {0: 2298631, 1: 2298830, 8: 2299092, 12: 2299120, 279: 2324704, 280: 2328994, 282: 2329178, 410: 2329372}
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | --------------------------------------------------
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | 
[2025-11-20 13:01:24] 2025-11-20 21:00:31,164 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 13:01:24] 2025-11-20 21:00:31,275 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,275 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,275 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,275 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,277 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,281 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 13:01:24] 2025-11-20 21:00:31,281 | INFO     | job 6893874142 has completed (purged errors)
[2025-11-20 13:01:24] 2025-11-20 21:00:31,281 | INFO     | overall cleanup function is called
[2025-11-20 13:01:24] 2025-11-20 21:00:32,301 | INFO     | --- collectZombieJob: --- 10, [1866622]
[2025-11-20 13:01:24] 2025-11-20 21:00:32,301 | INFO     | zombie collector waiting for pid 1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:32,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 13:01:24] 2025-11-20 21:00:32,301 | INFO     | collected zombie processes
[2025-11-20 13:01:24] 2025-11-20 21:00:32,301 | INFO     | will attempt to kill all subprocesses of pid=1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:32,573 | INFO     | process IDs to be killed: [1866622] (in reverse order)
[2025-11-20 13:01:24] 2025-11-20 21:00:32,623 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 13:01:24] 2025-11-20 21:00:32,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 13:01:24] 2025-11-20 21:00:32,628 | INFO     | did not find any defunct processes belonging to 1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:32,631 | INFO     | did not find any defunct processes belonging to 1866622
[2025-11-20 13:01:24] 2025-11-20 21:00:32,632 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 13:01:24] 2025-11-20 21:00:32,632 | INFO     | ready for new job
[2025-11-20 13:01:24] 2025-11-20 21:00:32,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 13:01:24] 2025-11-20 21:00:32,633 | INFO     | ***************************************
[2025-11-20 13:01:24] 2025-11-20 21:00:32,635 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 13:01:24] 2025-11-20 21:00:32,635 | INFO     | ***************************************
[2025-11-20 13:01:24] 2025-11-20 21:00:32,635 | INFO     | 
[2025-11-20 13:01:24] 2025-11-20 21:00:32,636 | INFO     | architecture information:
[2025-11-20 13:01:24] 2025-11-20 21:00:32,636 | INFO     | executing command: cat /etc/os-release
[2025-11-20 13:01:24] 2025-11-20 21:00:32,646 | INFO     | cat /etc/os-release:
[2025-11-20 13:01:24] NAME="CentOS Linux"
[2025-11-20 13:01:24] VERSION="7 (Core)"
[2025-11-20 13:01:24] ID="centos"
[2025-11-20 13:01:24] ID_LIKE="rhel fedora"
[2025-11-20 13:01:24] VERSION_ID="7"
[2025-11-20 13:01:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 13:01:24] ANSI_COLOR="0;31"
[2025-11-20 13:01:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 13:01:24] HOME_URL="https://www.centos.org/"
[2025-11-20 13:01:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 13:01:24] 
[2025-11-20 13:01:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 13:01:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 13:01:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 13:01:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 13:01:24] 
[2025-11-20 13:01:24] 2025-11-20 21:00:32,646 | INFO     | ***************************************
[2025-11-20 13:01:24] 2025-11-20 21:00:33,149 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 13:01:24] 2025-11-20 21:00:33,234 | INFO     | sufficient remaining disk space (1341723246592 B)
[2025-11-20 13:01:24] 2025-11-20 21:00:33,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 13:01:24] 2025-11-20 21:00:33,235 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 13:01:24] 2025-11-20 21:00:33,235 | INFO     | update_server=False
[2025-11-20 13:01:24] 2025-11-20 21:00:33,235 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 13:01:24] 2025-11-20 21:00:33,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 13:01:24] 2025-11-20 21:00:33,795 | INFO     | all payload control threads have been joined
[2025-11-20 13:01:24] 2025-11-20 21:00:34,031 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:01:24] 2025-11-20 21:00:34,031 | INFO     | aborting loop
[2025-11-20 13:01:24] 2025-11-20 21:00:34,241 | INFO     | [job] retrieve thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:34,282 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:34,324 | INFO     | all data control threads have been joined
[2025-11-20 13:01:24] 2025-11-20 21:00:34,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:34,459 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:34,754 | INFO     | all job control threads have been joined
[2025-11-20 13:01:24] 2025-11-20 21:00:34,800 | INFO     | [payload] control thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,037 | INFO     | [job] job monitor thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,101 | INFO     | [payload] failed_post thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,257 | INFO     | [data] copytool_out thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,330 | INFO     | [data] control thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,455 | INFO     | [payload] validate_post thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 13:01:24] 2025-11-20 21:00:35,679 | INFO     | [job] validate thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,695 | INFO     | [data] copytool_in thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,697 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:35,761 | INFO     | [job] control thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:36,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:01:24] 2025-11-20 21:00:37,185 | INFO     | [job] queue monitor thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:00:39,534 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 13:01:24] 2025-11-20 21:01:05,591 | INFO     | PID=1857389 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 13:01:24] 2025-11-20 21:01:05,592 | INFO     | .. there are 19 such processes running
[2025-11-20 13:01:24] 2025-11-20 21:01:05,662 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 13:01:24] 2025-11-20 21:01:05,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 13:01:24] 2025-11-20 21:01:05,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 13:01:24] 2025-11-20 21:01:18,592 | INFO     | [monitor] cgroup control has ended
[2025-11-20 13:01:24] 2025-11-20 21:01:18,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883485030208)>', '<ExcThread(monitor, started 139882554963712)>']
[2025-11-20 13:01:24] 2025-11-20 21:01:19,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 13:01:24] 2025-11-20 21:01:19,747 | INFO     | [monitor] control thread has ended
[2025-11-20 13:01:24] 2025-11-20 21:01:23,996 | INFO     | all workflow threads have been joined
[2025-11-20 13:01:24] 2025-11-20 21:01:23,996 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 13:01:24] 2025-11-20 21:01:23,996 | INFO     | traces error code: 0
[2025-11-20 13:01:24] 2025-11-20 21:01:23,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 13:01:24] 2025-11-20 21:01:24,126 [wrapper] ==== pilot stdout END ====
[2025-11-20 13:01:24] 2025-11-20 21:01:24,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 13:01:24] 2025-11-20 21:01:24,130 [wrapper] pilotpid: 1857389
[2025-11-20 13:01:24] 2025-11-20 21:01:24,131 [wrapper] Pilot exit status: 0
[2025-11-20 13:01:24] 2025-11-20 21:01:24,187 [wrapper] pandaids: 6893874142
[2025-11-20 13:01:24] 2025-11-20 21:01:24,253 [wrapper] cleanup supervisor_pilot 1857395 1857390
[2025-11-20 13:01:24] 2025-11-20 21:01:24,261 [wrapper] Test setup, not cleaning
[2025-11-20 13:01:24] 2025-11-20 21:01:24,310 [wrapper] apfmon messages muted
[2025-11-20 13:01:24] 2025-11-20 21:01:24,333 [wrapper] ==== wrapper stdout END ====
[2025-11-20 13:01:24] 2025-11-20 21:01:24,372 [wrapper] ==== wrapper stderr END ====
[2025-11-20 13:01:24]  *** Error codes and diagnostics ***
[2025-11-20 13:01:24]     "exeErrorCode": 65,
[2025-11-20 13:01:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 13:01:24]     "pilotErrorCode": 1305,
[2025-11-20 13:01:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 13:01:24]  *** Listing of results directory ***
[2025-11-20 13:01:24] total 403368
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-20 13:01:24] -rwx------. 1 boinc boinc     36292 Nov 20 07:36 runpilot2-wrapper.sh
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc      5112 Nov 20 07:36 queuedata.json
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc       100 Nov 20 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 13:01:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 12:52 run_atlas
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc       105 Nov 20 12:52 job.xml
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc      6445 Nov 20 12:52 init_data.xml
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc 408782734 Nov 20 12:52 EVNT.47493127._000702.pool.root.1
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc     15847 Nov 20 12:52 start_atlas.sh
[2025-11-20 13:01:24] drwxrwx--x. 2 boinc boinc      4096 Nov 20 12:52 shared
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc    590096 Nov 20 12:52 input.tar.gz
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc         0 Nov 20 12:52 boinc_lockfile
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc      2784 Nov 20 12:52 pandaJob.out
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc    989464 Nov 20 12:53 agis_schedconf.cvmfs.json
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc   1526164 Nov 20 12:53 agis_ddmendpoints.agis.ALL.json
[2025-11-20 13:01:24] drwx------. 5 boinc boinc      4096 Nov 20 12:53 pilot3
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc       525 Nov 20 12:58 boinc_task_state.xml
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc       997 Nov 20 12:58 memory_monitor_summary.json
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc     51552 Nov 20 12:58 log.47523449._007017.job.log.tgz.1
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc        95 Nov 20 13:00 pilot_heartbeat.json
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc     10330 Nov 20 13:00 heartbeat.json
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc      4823 Nov 20 13:01 pilotlog.txt
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc      8192 Nov 20 13:01 boinc_mmap_file
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc    120288 Nov 20 13:01 log.47523449._007017.job.log.1
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc        23 Nov 20 13:01 wrapper_checkpoint.txt
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc       186 Nov 20 13:01 output.list
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc       620 Nov 20 13:01 runtime_log
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc    194560 Nov 20 13:01 result.tar.gz
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc      8634 Nov 20 13:01 runtime_log.err
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc       644 Nov 20 13:01 BpdMDmtsLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9rGKDmw9J3jm.diag
[2025-11-20 13:01:24] -rw-r--r--. 1 boinc boinc     22638 Nov 20 13:01 stderr.txt
[2025-11-20 13:01:24] No HITS result produced
[2025-11-20 13:01:24]  *** Contents of shared directory: ***
[2025-11-20 13:01:24] total 399996
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc 408782734 Nov 20 12:52 ATLAS.root_0
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc     15847 Nov 20 12:52 start_atlas.sh
[2025-11-20 13:01:24] -rw-r--r--. 2 boinc boinc    590096 Nov 20 12:52 input.tar.gz
[2025-11-20 13:01:24] -rw-------. 1 boinc boinc    194560 Nov 20 13:01 result.tar.gz
13:01:26 (1853714): run_atlas exited; CPU time 55.287874
13:01:26 (1853714): called boinc_finish(0)

</stderr_txt>
]]>

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