Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:57:24 (3487643): wrapper (7.7.26015): starting
23:57:24 (3487643): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 23:57:24] Arguments: --nthreads 4
[2025-11-20 23:57:24] Threads: 4
[2025-11-20 23:57:24] Checking for CVMFS
[2025-11-20 23:57:24] No cvmfs_config command found, will try listing directly
[2025-11-20 23:57:24] CVMFS is ok
[2025-11-20 23:57:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:57:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:57:24] Further information can be found at the LHC@home message board.
[2025-11-20 23:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:57:24] Checking for apptainer binary...
[2025-11-20 23:57:24] which: no apptainer in ((null))
[2025-11-20 23:57:24] apptainer is not installed, using version from CVMFS
[2025-11-20 23:57:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:57:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-11-20 23:57:25] apptainer works
[2025-11-20 23:57:25] Set ATHENA_PROC_NUMBER=4
[2025-11-20 23:57:25] Set ATHENA_CORE_NUMBER=4
[2025-11-20 23:57:25] Starting ATLAS job with PandaID=6893857280
[2025-11-20 23:57:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:53:02]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:53:02] 2025-11-21 15:39:31,713 | INFO     | time since job start (60112s) is within the limit (172800.0s)
[2025-11-21 16:53:02] 2025-11-21 15:39:31,903 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 16:53:02] 2025-11-21 15:39:31,922 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2697.179820312499
[2025-11-21 16:53:02] 2025-11-21 15:39:31,945 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893857280/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:53:02] 2025-11-21 15:39:31,946 | INFO     | extracted standard info from prmon json
[2025-11-21 16:53:02] 2025-11-21 15:39:31,946 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:53:02] 2025-11-21 15:39:31,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:53:02] 2025-11-21 15:39:31,960 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:53:02] 2025-11-21 15:39:31,961 | INFO     | sum of square deviations: 296337607075.4557
[2025-11-21 16:53:02] 2025-11-21 15:39:31,983 | INFO     | sum of deviations: 839146140947.741
[2025-11-21 16:53:02] 2025-11-21 15:39:31,983 | INFO     | mean x: 1763709506.039594
[2025-11-21 16:53:02] 2025-11-21 15:39:31,986 | INFO     | mean y: 2267436.8527918784
[2025-11-21 16:53:02] 2025-11-21 15:39:31,986 | INFO     | intersect: -4992070070.128293
[2025-11-21 16:53:02] 2025-11-21 15:39:31,987 | INFO     | chi2: 4.5640785845320595
[2025-11-21 16:53:02] 2025-11-21 15:39:31,988 | INFO     | sum of square deviations: 291847730135.44745
[2025-11-21 16:53:02] 2025-11-21 15:39:32,008 | INFO     | sum of deviations: 1057507949834.1332
[2025-11-21 16:53:02] 2025-11-21 15:39:32,009 | INFO     | mean x: 1763709353.5397959
[2025-11-21 16:53:02] 2025-11-21 15:39:32,009 | INFO     | mean y: 2274850.663265306
[2025-11-21 16:53:02] 2025-11-21 15:39:32,009 | INFO     | intersect: -6388512090.525341
[2025-11-21 16:53:02] 2025-11-21 15:39:32,010 | INFO     | chi2: 2.1628214113646735
[2025-11-21 16:53:02] 2025-11-21 15:39:32,010 | INFO     | current chi2=2.1628214113646735 (change=52.61209088961336 %)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,011 | INFO     | sum of square deviations: 287403435445.4394
[2025-11-21 16:53:02] 2025-11-21 15:39:32,031 | INFO     | sum of deviations: 1064620236860.2401
[2025-11-21 16:53:02] 2025-11-21 15:39:32,031 | INFO     | mean x: 1763709201.04
[2025-11-21 16:53:02] 2025-11-21 15:39:32,032 | INFO     | mean y: 2275092.6605128204
[2025-11-21 16:53:02] 2025-11-21 15:39:32,032 | INFO     | intersect: -6530981910.526034
[2025-11-21 16:53:02] 2025-11-21 15:39:32,033 | INFO     | chi2: 2.121419625870711
[2025-11-21 16:53:02] 2025-11-21 15:39:32,033 | INFO     | current chi2=2.121419625870711 (change=1.914248919324277 %)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,033 | INFO     | right removable region: 974
[2025-11-21 16:53:02] 2025-11-21 15:39:32,034 | INFO     | sum of square deviations: 291847706345.44745
[2025-11-21 16:53:02] 2025-11-21 15:39:32,055 | INFO     | sum of deviations: 649067862613.6777
[2025-11-21 16:53:02] 2025-11-21 15:39:32,056 | INFO     | mean x: 1763709658.5397959
[2025-11-21 16:53:02] 2025-11-21 15:39:32,056 | INFO     | mean y: 2273882.8928571427
[2025-11-21 16:53:02] 2025-11-21 15:39:32,056 | INFO     | intersect: -3920207717.7831936
[2025-11-21 16:53:02] 2025-11-21 15:39:32,057 | INFO     | chi2: 2.6042758172473066
[2025-11-21 16:53:02] 2025-11-21 15:39:32,057 | INFO     | current chi2=2.6042758172473066 (change=42.93972443696837 %)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,058 | INFO     | sum of square deviations: 287403387865.4395
[2025-11-21 16:53:02] 2025-11-21 15:39:32,079 | INFO     | sum of deviations: 612636757374.6797
[2025-11-21 16:53:02] 2025-11-21 15:39:32,079 | INFO     | mean x: 1763709811.04
[2025-11-21 16:53:02] 2025-11-21 15:39:32,079 | INFO     | mean y: 2275132.4953846154
[2025-11-21 16:53:02] 2025-11-21 15:39:32,079 | INFO     | intersect: -3757295927.5762677
[2025-11-21 16:53:02] 2025-11-21 15:39:32,080 | INFO     | chi2: 2.5742274028849073
[2025-11-21 16:53:02] 2025-11-21 15:39:32,080 | INFO     | current chi2=2.5742274028849073 (change=1.1538107508965862 %)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,080 | INFO     | left removable region: 20
[2025-11-21 16:53:02] 2025-11-21 15:39:32,081 | INFO     | sum of square deviations: 269229812286.90582
[2025-11-21 16:53:02] 2025-11-21 15:39:32,101 | INFO     | sum of deviations: 782580414820.7479
[2025-11-21 16:53:02] 2025-11-21 15:39:32,101 | INFO     | mean x: 1763709780.5408804
[2025-11-21 16:53:02] 2025-11-21 15:39:32,101 | INFO     | mean y: 2284794.7756813415
[2025-11-21 16:53:02] 2025-11-21 15:39:32,101 | INFO     | intersect: -5124356716.262588
[2025-11-21 16:53:02] 2025-11-21 15:39:32,102 | INFO     | chi2: 0.10061190130987825
[2025-11-21 16:53:02] 2025-11-21 15:39:32,102 | INFO     | current memory leak: 2.91 B/s (using 954 data points, chi2=0.10)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,103 | INFO     | could have reported an average CPU frequency of 2668 MHz (37 samples)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,103 | INFO     | ..............................
[2025-11-21 16:53:02] 2025-11-21 15:39:32,103 | INFO     | . Timing measurements:
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . get job = 0 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . initial setup = 1 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . payload setup = 9 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . stage-in = 0 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . payload execution = 60070 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . stage-out = 2 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | . log creation = 0 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,104 | INFO     | ..............................
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | 
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | job summary report
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | --------------------------------------------------
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | PanDA job id: 6893857280
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | task id: 47523449
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | errors: (none)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | pilot state: finished 
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | transexitcode: 0
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | exeerrorcode: 0
[2025-11-21 16:53:02] 2025-11-21 15:39:32,186 | INFO     | exeerrordiag: 
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | exitcode: 0
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | exitmsg: OK
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | cpuconsumptiontime: 235744 s
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | nevents: 1000
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | neventsw: 0
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | pid: 3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | pgrp: 3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | corecount: 4
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | event service: False
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | sizes: {0: 2298642, 1: 2298841, 7: 2299103, 12: 2299131, 60083: 2352904, 60086: 2362106, 60094: 2362296}
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | --------------------------------------------------
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | 
[2025-11-21 16:53:02] 2025-11-21 15:39:32,187 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,220 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,222 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:53:02] 2025-11-21 15:39:32,222 | INFO     | job 6893857280 has completed (purged errors)
[2025-11-21 16:53:02] 2025-11-21 15:39:32,222 | INFO     | overall cleanup function is called
[2025-11-21 16:53:02] 2025-11-21 15:39:33,239 | INFO     | --- collectZombieJob: --- 10, [3501577]
[2025-11-21 16:53:02] 2025-11-21 15:39:33,239 | INFO     | zombie collector waiting for pid 3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:33,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:53:02] 2025-11-21 15:39:33,239 | INFO     | collected zombie processes
[2025-11-21 16:53:02] 2025-11-21 15:39:33,239 | INFO     | will attempt to kill all subprocesses of pid=3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:34,283 | INFO     | PID=3493916 has CPU usage=26.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 16:53:02] 2025-11-21 15:39:34,283 | INFO     | .. there are 8 such processes running
[2025-11-21 16:53:02] 2025-11-21 15:39:34,672 | INFO     | process IDs to be killed: [3501577] (in reverse order)
[2025-11-21 16:53:02] 2025-11-21 15:39:34,939 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:53:02] 2025-11-21 15:39:34,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:53:02] 2025-11-21 15:39:34,972 | INFO     | did not find any defunct processes belonging to 3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:35,003 | INFO     | did not find any defunct processes belonging to 3501577
[2025-11-21 16:53:02] 2025-11-21 15:39:35,004 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:53:02] 2025-11-21 15:39:35,005 | INFO     | ready for new job
[2025-11-21 16:53:02] 2025-11-21 15:39:35,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:53:02] 2025-11-21 15:39:35,011 | INFO     | ***************************************
[2025-11-21 16:53:02] 2025-11-21 15:39:35,011 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:53:02] 2025-11-21 15:39:35,011 | INFO     | ***************************************
[2025-11-21 16:53:02] 2025-11-21 15:39:35,011 | INFO     | 
[2025-11-21 16:53:02] 2025-11-21 15:39:35,019 | INFO     | architecture information:
[2025-11-21 16:53:02] 2025-11-21 15:39:35,020 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:53:02] 2025-11-21 15:39:35,044 | INFO     | cat /etc/os-release:
[2025-11-21 16:53:02] NAME="CentOS Linux"
[2025-11-21 16:53:02] VERSION="7 (Core)"
[2025-11-21 16:53:02] ID="centos"
[2025-11-21 16:53:02] ID_LIKE="rhel fedora"
[2025-11-21 16:53:02] VERSION_ID="7"
[2025-11-21 16:53:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:53:02] ANSI_COLOR="0;31"
[2025-11-21 16:53:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:53:02] HOME_URL="https://www.centos.org/"
[2025-11-21 16:53:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:53:02] 
[2025-11-21 16:53:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:53:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:53:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:53:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:53:02] 
[2025-11-21 16:53:02] 2025-11-21 15:39:35,044 | INFO     | ***************************************
[2025-11-21 16:53:02] 2025-11-21 15:39:35,547 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-21 16:53:02] 2025-11-21 15:39:35,570 | INFO     | sufficient remaining disk space (3303787200512 B)
[2025-11-21 16:53:02] 2025-11-21 15:39:35,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:53:02] 2025-11-21 15:39:35,571 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:53:02] 2025-11-21 15:39:35,571 | INFO     | update_server=False
[2025-11-21 16:53:02] 2025-11-21 15:39:35,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:53:02] 2025-11-21 15:39:35,622 | INFO     | all data control threads have been joined
[2025-11-21 16:53:02] 2025-11-21 15:39:36,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:53:02] 2025-11-21 15:39:36,120 | INFO     | aborting loop
[2025-11-21 16:53:02] 2025-11-21 15:39:36,246 | INFO     | all job control threads have been joined
[2025-11-21 16:53:02] 2025-11-21 15:39:36,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:53:02] 2025-11-21 15:39:36,576 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:36,595 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:36,627 | INFO     | [data] control thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:36,799 | INFO     | [job] validate thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:36,859 | INFO     | all payload control threads have been joined
[2025-11-21 16:53:02] 2025-11-21 15:39:36,985 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,126 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:53:02] 2025-11-21 15:39:37,252 | INFO     | [job] control thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,290 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,469 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,864 | INFO     | [payload] control thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:37,880 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:38,204 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:38,498 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:39:39,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:53:02] 2025-11-21 15:39:43,033 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:53:02] 2025-11-21 15:40:07,263 | INFO     | PID=3493916 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:53:02] 2025-11-21 15:40:07,263 | INFO     | .. there are 8 such processes running
[2025-11-21 16:53:02] 2025-11-21 15:40:07,264 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:53:02] 2025-11-21 15:40:07,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:53:02] 2025-11-21 15:40:07,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:53:02] 2025-11-21 15:40:20,573 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:53:02] 2025-11-21 15:40:20,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23190153267008)>', '<ExcThread(monitor, started 23189914613504)>']
[2025-11-21 16:53:02] 2025-11-21 15:40:21,334 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:53:02] 2025-11-21 15:40:21,334 | INFO     | [monitor] control thread has ended
[2025-11-21 16:53:02] 2025-11-21 15:40:25,647 | INFO     | all workflow threads have been joined
[2025-11-21 16:53:02] 2025-11-21 15:40:25,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:53:02] 2025-11-21 15:40:25,648 | INFO     | traces error code: 0
[2025-11-21 16:53:02] 2025-11-21 15:40:25,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:53:02] 2025-11-21 15:40:25,789 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:53:02] 2025-11-21 15:40:25,793 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:53:02] 2025-11-21 15:40:25,797 [wrapper] pilotpid: 3493916
[2025-11-21 16:53:02] 2025-11-21 15:40:25,800 [wrapper] Pilot exit status: 0
[2025-11-21 16:53:02] 2025-11-21 15:40:25,815 [wrapper] pandaids: 6893857280
[2025-11-21 16:53:02] 2025-11-21 15:40:25,991 [wrapper] cleanup supervisor_pilot  972928 3493917
[2025-11-21 16:53:02] 2025-11-21 15:40:25,995 [wrapper] Test setup, not cleaning
[2025-11-21 16:53:02] 2025-11-21 15:40:25,999 [wrapper] apfmon messages muted
[2025-11-21 16:53:02] 2025-11-21 15:40:26,002 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:53:02] 2025-11-21 15:40:26,005 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:53:02]  *** Error codes and diagnostics ***
[2025-11-21 16:53:02]     "exeErrorCode": 0,
[2025-11-21 16:53:02]     "exeErrorDiag": "",
[2025-11-21 16:53:02]     "pilotErrorCode": 0,
[2025-11-21 16:53:02]     "pilotErrorDiag": "",
[2025-11-21 16:53:02]  *** Listing of results directory ***
[2025-11-21 16:53:02] total 1329264
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:56 pilot3.tar.gz
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:57 queuedata.json
[2025-11-21 16:53:02] -rwx------ 1 boinc boinc     36292 Nov 20 13:57 runpilot2-wrapper.sh
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc       100 Nov 20 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:53:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 22:17 run_atlas
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc       105 Nov 20 22:17 job.xml
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc 410508911 Nov 20 23:57 EVNT.47493127._000481.pool.root.1
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc      6687 Nov 20 23:57 init_data.xml
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:57 start_atlas.sh
[2025-11-21 16:53:02] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:57 shared
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc    590100 Nov 20 23:57 input.tar.gz
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:57 boinc_lockfile
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc      2783 Nov 20 23:57 pandaJob.out
[2025-11-21 16:53:02] -rw------- 1 boinc boinc    989825 Nov 20 23:57 agis_schedconf.cvmfs.json
[2025-11-21 16:53:02] drwx------ 5 boinc boinc      4096 Nov 20 23:57 pilot3
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc       532 Nov 21 16:31 boinc_task_state.xml
[2025-11-21 16:53:02] -rw------- 1 boinc boinc 926890213 Nov 21 16:38 HITS.47523449._004801.pool.root.1
[2025-11-21 16:53:02] -rw------- 1 boinc boinc      1039 Nov 21 16:39 memory_monitor_summary.json
[2025-11-21 16:53:02] -rw------- 1 boinc boinc   1526164 Nov 21 16:39 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:53:02] -rw------- 1 boinc boinc   1708370 Nov 21 16:39 log.47523449._004801.job.log.tgz.1
[2025-11-21 16:53:02] -rw------- 1 boinc boinc        95 Nov 21 16:39 pilot_heartbeat.json
[2025-11-21 16:53:02] -rw------- 1 boinc boinc      7921 Nov 21 16:39 heartbeat.json
[2025-11-21 16:53:02] -rw------- 1 boinc boinc      4835 Nov 21 16:40 pilotlog.txt
[2025-11-21 16:53:02] -rw------- 1 boinc boinc   8215258 Nov 21 16:40 log.47523449._004801.job.log.1
[2025-11-21 16:53:02] -rw------- 1 boinc boinc       353 Nov 21 16:40 output.list
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc       620 Nov 21 16:40 runtime_log
[2025-11-21 16:53:02] -rw------- 1 boinc boinc   9943040 Nov 21 16:40 result.tar.gz
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc      9223 Nov 21 16:40 runtime_log.err
[2025-11-21 16:53:02] -rw------- 1 boinc boinc       671 Nov 21 16:40 7vpNDmTPJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWfGKDm3KyJUo.diag
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc        28 Nov 21 16:52 wrapper_checkpoint.txt
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc      8192 Nov 21 16:53 boinc_mmap_file
[2025-11-21 16:53:02] -rw-r--r-- 1 boinc boinc     21168 Nov 21 16:53 stderr.txt
[2025-11-21 16:53:02] HITS file was successfully produced:
[2025-11-21 16:53:02] -rw------- 1 boinc boinc 926890213 Nov 21 16:38 shared/HITS.pool.root.1
[2025-11-21 16:53:02]  *** Contents of shared directory: ***
[2025-11-21 16:53:02] total 1316372
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc 410508911 Nov 20 23:57 ATLAS.root_0
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:57 start_atlas.sh
[2025-11-21 16:53:02] -rw-r--r-- 2 boinc boinc    590100 Nov 20 23:57 input.tar.gz
[2025-11-21 16:53:02] -rw------- 1 boinc boinc 926890213 Nov 21 16:38 HITS.pool.root.1
[2025-11-21 16:53:02] -rw------- 1 boinc boinc   9943040 Nov 21 16:40 result.tar.gz
16:53:03 (3487643): run_atlas exited; CPU time 238743.838840
16:53:03 (3487643): called boinc_finish(0)

</stderr_txt>
]]>

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