Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:18:38 (2758590): wrapper (7.7.26015): starting
07:18:38 (2758590): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 07:18:38] Arguments: --nthreads 4
[2025-11-26 07:18:38] Threads: 4
[2025-11-26 07:18:38] Checking for CVMFS
[2025-11-26 07:18:38] No cvmfs_config command found, will try listing directly
[2025-11-26 07:18:38] CVMFS is ok
[2025-11-26 07:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 07:18:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 07:18:38] Further information can be found at the LHC@home message board.
[2025-11-26 07:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 07:18:38] Checking for apptainer binary...
[2025-11-26 07:18:38] which: no apptainer in ((null))
[2025-11-26 07:18:38] apptainer is not installed, using version from CVMFS
[2025-11-26 07:18:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 07:18:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-11-26 07:18:39] apptainer works
[2025-11-26 07:18:39] Set ATHENA_PROC_NUMBER=4
[2025-11-26 07:18:39] Set ATHENA_CORE_NUMBER=4
[2025-11-26 07:18:39] Starting ATLAS job with PandaID=6893857023
[2025-11-26 07:18:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:11:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:11:05] 2025-11-26 22:05:44,671 | INFO     | time since job start (56811s) is within the limit (172800.0s)
[2025-11-26 23:11:05] 2025-11-26 22:05:45,786 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:11:05] 2025-11-26 22:05:45,847 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2701.116171874999
[2025-11-26 23:11:05] 2025-11-26 22:05:45,878 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6893857023/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:11:05] 2025-11-26 22:05:45,879 | INFO     | extracted standard info from prmon json
[2025-11-26 23:11:05] 2025-11-26 22:05:45,879 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:11:05] 2025-11-26 22:05:45,879 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:11:05] 2025-11-26 22:05:45,895 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:11:05] 2025-11-26 22:05:45,896 | INFO     | sum of square deviations: 250222849730.0
[2025-11-26 23:11:05] 2025-11-26 22:05:45,915 | INFO     | sum of deviations: 548903613655.99994
[2025-11-26 23:11:05] 2025-11-26 22:05:45,916 | INFO     | mean x: 1764166333.0
[2025-11-26 23:11:05] 2025-11-26 22:05:45,916 | INFO     | mean y: 2278425.073039742
[2025-11-26 23:11:05] 2025-11-26 22:05:45,916 | INFO     | intersect: -3867700980.560173
[2025-11-26 23:11:05] 2025-11-26 22:05:45,917 | INFO     | chi2: 4.00031942751453
[2025-11-26 23:11:05] 2025-11-26 22:05:45,918 | INFO     | sum of square deviations: 246212941987.5
[2025-11-26 23:11:05] 2025-11-26 22:05:45,939 | INFO     | sum of deviations: 741305432788.501
[2025-11-26 23:11:05] 2025-11-26 22:05:45,939 | INFO     | mean x: 1764166180.5
[2025-11-26 23:11:05] 2025-11-26 22:05:45,939 | INFO     | mean y: 2285739.5388768897
[2025-11-26 23:11:05] 2025-11-26 22:05:45,939 | INFO     | intersect: -5309319586.280204
[2025-11-26 23:11:05] 2025-11-26 22:05:45,940 | INFO     | chi2: 1.9517839260117362
[2025-11-26 23:11:05] 2025-11-26 22:05:45,940 | INFO     | current chi2=1.9517839260117362 (change=51.20929812286478 %)
[2025-11-26 23:11:05] 2025-11-26 22:05:45,942 | INFO     | sum of square deviations: 242246104820.0
[2025-11-26 23:11:05] 2025-11-26 22:05:45,961 | INFO     | sum of deviations: 748891302172.9999
[2025-11-26 23:11:05] 2025-11-26 22:05:45,962 | INFO     | mean x: 1764166028.0
[2025-11-26 23:11:05] 2025-11-26 22:05:45,962 | INFO     | mean y: 2286028.9467969597
[2025-11-26 23:11:05] 2025-11-26 22:05:45,962 | INFO     | intersect: -5451541990.042313
[2025-11-26 23:11:05] 2025-11-26 22:05:45,963 | INFO     | chi2: 1.9159349846999212
[2025-11-26 23:11:05] 2025-11-26 22:05:45,963 | INFO     | current chi2=1.9159349846999212 (change=1.8367269467716416 %)
[2025-11-26 23:11:05] 2025-11-26 22:05:45,963 | INFO     | right removable region: 920
[2025-11-26 23:11:05] 2025-11-26 22:05:45,964 | INFO     | sum of square deviations: 246212941987.5
[2025-11-26 23:11:05] 2025-11-26 22:05:45,984 | INFO     | sum of deviations: 382958784917.5001
[2025-11-26 23:11:05] 2025-11-26 22:05:45,984 | INFO     | mean x: 1764166485.5
[2025-11-26 23:11:05] 2025-11-26 22:05:45,984 | INFO     | mean y: 2284723.936285097
[2025-11-26 23:11:05] 2025-11-26 22:05:45,984 | INFO     | intersect: -2741693915.958105
[2025-11-26 23:11:05] 2025-11-26 22:05:45,985 | INFO     | chi2: 2.177845739993655
[2025-11-26 23:11:05] 2025-11-26 22:05:45,986 | INFO     | current chi2=2.177845739993655 (change=45.55820405205018 %)
[2025-11-26 23:11:05] 2025-11-26 22:05:45,987 | INFO     | sum of square deviations: 242246104820.0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,006 | INFO     | sum of deviations: 371991803263.0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,006 | INFO     | mean x: 1764166638.0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,006 | INFO     | mean y: 2285144.9695982626
[2025-11-26 23:11:05] 2025-11-26 22:05:46,006 | INFO     | intersect: -2706759565.630278
[2025-11-26 23:11:05] 2025-11-26 22:05:46,007 | INFO     | chi2: 2.176112449988245
[2025-11-26 23:11:05] 2025-11-26 22:05:46,007 | INFO     | current chi2=2.176112449988245 (change=0.07958736349318851 %)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,007 | INFO     | left removable region: 20
[2025-11-26 23:11:05] 2025-11-26 22:05:46,008 | INFO     | sum of square deviations: 226050470925.0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,026 | INFO     | sum of deviations: 562938059702.0001
[2025-11-26 23:11:05] 2025-11-26 22:05:46,027 | INFO     | mean x: 1764166607.5
[2025-11-26 23:11:05] 2025-11-26 22:05:46,027 | INFO     | mean y: 2293142.9377777777
[2025-11-26 23:11:05] 2025-11-26 22:05:46,027 | INFO     | intersect: -4391046640.665728
[2025-11-26 23:11:05] 2025-11-26 22:05:46,028 | INFO     | chi2: 0.07510061538729415
[2025-11-26 23:11:05] 2025-11-26 22:05:46,028 | INFO     | current memory leak: 2.49 B/s (using 900 data points, chi2=0.08)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,029 | INFO     | could have reported an average CPU frequency of 2673 MHz (35 samples)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,029 | INFO     | ..............................
[2025-11-26 23:11:05] 2025-11-26 22:05:46,029 | INFO     | . Timing measurements:
[2025-11-26 23:11:05] 2025-11-26 22:05:46,029 | INFO     | . get job = 0 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,032 | INFO     | . initial setup = 1 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | . payload setup = 9 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | . stage-in = 0 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | . payload execution = 56770 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | . stage-out = 2 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | . log creation = 0 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,033 | INFO     | ..............................
[2025-11-26 23:11:05] 2025-11-26 22:05:46,130 | INFO     | 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,130 | INFO     | job summary report
[2025-11-26 23:11:05] 2025-11-26 22:05:46,130 | INFO     | --------------------------------------------------
[2025-11-26 23:11:05] 2025-11-26 22:05:46,130 | INFO     | PanDA job id: 6893857023
[2025-11-26 23:11:05] 2025-11-26 22:05:46,130 | INFO     | task id: 47523449
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | errors: (none)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | pilot state: finished 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | transexitcode: 0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | exeerrorcode: 0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | exeerrordiag: 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | exitcode: 0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | exitmsg: OK
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | cpuconsumptiontime: 225093 s
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | nevents: 1000
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | neventsw: 0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,131 | INFO     | pid: 2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | pgrp: 2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | corecount: 4
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | event service: False
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | sizes: {0: 2284156, 1: 2284355, 7: 2284617, 11: 2284645, 56784: 2338681, 56787: 2347727, 56788: 2347911, 56794: 2348157}
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | --------------------------------------------------
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,132 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,166 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,167 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | job 6893857023 has completed (purged errors)
[2025-11-26 23:11:05] 2025-11-26 22:05:46,168 | INFO     | overall cleanup function is called
[2025-11-26 23:11:05] 2025-11-26 22:05:46,959 | INFO     | PID=2762612 has CPU usage=28.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 23:11:05] 2025-11-26 22:05:46,959 | INFO     | .. there are 6 such processes running
[2025-11-26 23:11:05] 2025-11-26 22:05:47,190 | INFO     | --- collectZombieJob: --- 10, [2770013]
[2025-11-26 23:11:05] 2025-11-26 22:05:47,190 | INFO     | zombie collector waiting for pid 2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:47,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:11:05] 2025-11-26 22:05:47,191 | INFO     | collected zombie processes
[2025-11-26 23:11:05] 2025-11-26 22:05:47,191 | INFO     | will attempt to kill all subprocesses of pid=2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:47,998 | INFO     | process IDs to be killed: [2770013] (in reverse order)
[2025-11-26 23:11:05] 2025-11-26 22:05:48,242 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:11:05] 2025-11-26 22:05:48,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:11:05] 2025-11-26 22:05:48,272 | INFO     | did not find any defunct processes belonging to 2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:48,302 | INFO     | did not find any defunct processes belonging to 2770013
[2025-11-26 23:11:05] 2025-11-26 22:05:48,303 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:11:05] 2025-11-26 22:05:48,303 | INFO     | ready for new job
[2025-11-26 23:11:05] 2025-11-26 22:05:48,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:11:05] 2025-11-26 22:05:48,309 | INFO     | ***************************************
[2025-11-26 23:11:05] 2025-11-26 22:05:48,309 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:11:05] 2025-11-26 22:05:48,309 | INFO     | ***************************************
[2025-11-26 23:11:05] 2025-11-26 22:05:48,309 | INFO     | 
[2025-11-26 23:11:05] 2025-11-26 22:05:48,317 | INFO     | architecture information:
[2025-11-26 23:11:05] 2025-11-26 22:05:48,318 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:11:05] 2025-11-26 22:05:48,339 | INFO     | cat /etc/os-release:
[2025-11-26 23:11:05] NAME="CentOS Linux"
[2025-11-26 23:11:05] VERSION="7 (Core)"
[2025-11-26 23:11:05] ID="centos"
[2025-11-26 23:11:05] ID_LIKE="rhel fedora"
[2025-11-26 23:11:05] VERSION_ID="7"
[2025-11-26 23:11:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:11:05] ANSI_COLOR="0;31"
[2025-11-26 23:11:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:11:05] HOME_URL="https://www.centos.org/"
[2025-11-26 23:11:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:11:05] 
[2025-11-26 23:11:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:11:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:11:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:11:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:11:05] 
[2025-11-26 23:11:05] 2025-11-26 22:05:48,339 | INFO     | ***************************************
[2025-11-26 23:11:05] 2025-11-26 22:05:48,841 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2025-11-26 23:11:05] 2025-11-26 22:05:48,865 | INFO     | sufficient remaining disk space (3296559366144 B)
[2025-11-26 23:11:05] 2025-11-26 22:05:48,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:11:05] 2025-11-26 22:05:48,865 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:11:05] 2025-11-26 22:05:48,865 | INFO     | update_server=False
[2025-11-26 23:11:05] 2025-11-26 22:05:48,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:11:05] 2025-11-26 22:05:48,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:11:05] 2025-11-26 22:05:48,950 | INFO     | all data control threads have been joined
[2025-11-26 23:11:05] 2025-11-26 22:05:49,691 | INFO     | all payload control threads have been joined
[2025-11-26 23:11:05] 2025-11-26 22:05:49,788 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:11:05] 2025-11-26 22:05:49,788 | INFO     | aborting loop
[2025-11-26 23:11:05] 2025-11-26 22:05:49,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:11:05] 2025-11-26 22:05:49,871 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:49,956 | INFO     | [data] control thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,132 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,135 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,476 | INFO     | all job control threads have been joined
[2025-11-26 23:11:05] 2025-11-26 22:05:50,697 | INFO     | [payload] control thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,793 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,816 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,854 | INFO     | [job] validate thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,923 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:50,957 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:51,059 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:51,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:11:05] 2025-11-26 22:05:51,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:51,161 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:51,481 | INFO     | [job] control thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:52,139 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:05:53,861 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:11:05] 2025-11-26 22:06:20,079 | INFO     | PID=2762612 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:11:05] 2025-11-26 22:06:20,079 | INFO     | .. there are 6 such processes running
[2025-11-26 23:11:05] 2025-11-26 22:06:20,079 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:11:05] 2025-11-26 22:06:20,079 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:11:05] 2025-11-26 22:06:20,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:11:05] 2025-11-26 22:06:26,719 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:11:05] 2025-11-26 22:06:27,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23075162801984)>', '<ExcThread(monitor, started 23074923575040)>']
[2025-11-26 23:11:05] 2025-11-26 22:06:28,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:11:05] 2025-11-26 22:06:28,107 | INFO     | [monitor] control thread has ended
[2025-11-26 23:11:05] 2025-11-26 22:06:32,437 | INFO     | all workflow threads have been joined
[2025-11-26 23:11:05] 2025-11-26 22:06:32,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:11:05] 2025-11-26 22:06:32,438 | INFO     | traces error code: 0
[2025-11-26 23:11:05] 2025-11-26 22:06:32,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:11:05] 2025-11-26 22:06:32,593 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:11:05] 2025-11-26 22:06:32,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:11:05] 2025-11-26 22:06:32,601 [wrapper] pilotpid: 2762612
[2025-11-26 23:11:05] 2025-11-26 22:06:32,605 [wrapper] Pilot exit status: 0
[2025-11-26 23:11:05] 2025-11-26 22:06:32,620 [wrapper] pandaids: 6893857023
[2025-11-26 23:11:05] 2025-11-26 22:06:32,785 [wrapper] cleanup supervisor_pilot 4058733 2762613
[2025-11-26 23:11:05] 2025-11-26 22:06:32,789 [wrapper] Test setup, not cleaning
[2025-11-26 23:11:05] 2025-11-26 22:06:32,793 [wrapper] apfmon messages muted
[2025-11-26 23:11:05] 2025-11-26 22:06:32,797 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:11:05] 2025-11-26 22:06:32,801 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:11:05]  *** Error codes and diagnostics ***
[2025-11-26 23:11:05]     "exeErrorCode": 0,
[2025-11-26 23:11:05]     "exeErrorDiag": "",
[2025-11-26 23:11:05]     "pilotErrorCode": 0,
[2025-11-26 23:11:05]     "pilotErrorDiag": "",
[2025-11-26 23:11:05]  *** Listing of results directory ***
[2025-11-26 23:11:05] total 1319100
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-26 23:11:05] -rwx------ 1 boinc boinc     36292 Nov 20 13:55 runpilot2-wrapper.sh
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:55 queuedata.json
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc       100 Nov 26 07:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:11:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 07:18 run_atlas
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc       105 Nov 26 07:18 job.xml
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc 410026856 Nov 26 07:18 EVNT.47493127._000472.pool.root.1
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc      6688 Nov 26 07:18 init_data.xml
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:18 start_atlas.sh
[2025-11-26 23:11:05] drwxrwx--x 2 boinc boinc      4096 Nov 26 07:18 shared
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc    590101 Nov 26 07:18 input.tar.gz
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc         0 Nov 26 07:18 boinc_lockfile
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc      2786 Nov 26 07:18 pandaJob.out
[2025-11-26 23:11:05] -rw------- 1 boinc boinc    991877 Nov 26 07:18 agis_schedconf.cvmfs.json
[2025-11-26 23:11:05] drwx------ 5 boinc boinc      4096 Nov 26 07:18 pilot3
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc       532 Nov 26 22:58 boinc_task_state.xml
[2025-11-26 23:11:05] -rw------- 1 boinc boinc 917802536 Nov 26 23:05 HITS.47523449._004720.pool.root.1
[2025-11-26 23:11:05] -rw------- 1 boinc boinc        95 Nov 26 23:05 pilot_heartbeat.json
[2025-11-26 23:11:05] -rw------- 1 boinc boinc      1041 Nov 26 23:05 memory_monitor_summary.json
[2025-11-26 23:11:05] -rw------- 1 boinc boinc   1516240 Nov 26 23:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:11:05] -rw------- 1 boinc boinc   1684570 Nov 26 23:05 log.47523449._004720.job.log.tgz.1
[2025-11-26 23:11:05] -rw------- 1 boinc boinc      8591 Nov 26 23:05 heartbeat.json
[2025-11-26 23:11:05] -rw------- 1 boinc boinc      4835 Nov 26 23:06 pilotlog.txt
[2025-11-26 23:11:05] -rw------- 1 boinc boinc   7822001 Nov 26 23:06 log.47523449._004720.job.log.1
[2025-11-26 23:11:05] -rw------- 1 boinc boinc       353 Nov 26 23:06 output.list
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc       620 Nov 26 23:06 runtime_log
[2025-11-26 23:11:05] -rw------- 1 boinc boinc   9523200 Nov 26 23:06 result.tar.gz
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc      9223 Nov 26 23:06 runtime_log.err
[2025-11-26 23:11:05] -rw------- 1 boinc boinc       670 Nov 26 23:06 6LtMDmcNJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOfGKDmBFzSkn.diag
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc        28 Nov 26 23:11 wrapper_checkpoint.txt
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc      8192 Nov 26 23:11 boinc_mmap_file
[2025-11-26 23:11:05] -rw-r--r-- 1 boinc boinc     21129 Nov 26 23:11 stderr.txt
[2025-11-26 23:11:05] HITS file was successfully produced:
[2025-11-26 23:11:05] -rw------- 1 boinc boinc 917802536 Nov 26 23:05 shared/HITS.pool.root.1
[2025-11-26 23:11:05]  *** Contents of shared directory: ***
[2025-11-26 23:11:05] total 1306616
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc 410026856 Nov 26 07:18 ATLAS.root_0
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 07:18 start_atlas.sh
[2025-11-26 23:11:05] -rw-r--r-- 2 boinc boinc    590101 Nov 26 07:18 input.tar.gz
[2025-11-26 23:11:05] -rw------- 1 boinc boinc 917802536 Nov 26 23:05 HITS.pool.root.1
[2025-11-26 23:11:05] -rw------- 1 boinc boinc   9523200 Nov 26 23:06 result.tar.gz
23:11:06 (2758590): run_atlas exited; CPU time 228130.810971
23:11:06 (2758590): called boinc_finish(0)

</stderr_txt>
]]>

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