Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:29:55 (1365947): wrapper (7.7.26015): starting
23:29:55 (1365947): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 23:29:55] Arguments: --nthreads 4
[2025-11-20 23:29:55] Threads: 4
[2025-11-20 23:29:55] Checking for CVMFS
[2025-11-20 23:29:55] No cvmfs_config command found, will try listing directly
[2025-11-20 23:29:55] CVMFS is ok
[2025-11-20 23:29:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:29:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:29:55] Further information can be found at the LHC@home message board.
[2025-11-20 23:29:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:29:55] Checking for apptainer binary...
[2025-11-20 23:29:55] which: no apptainer in ((null))
[2025-11-20 23:29:55] apptainer is not installed, using version from CVMFS
[2025-11-20 23:29:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:29:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2025-11-20 23:29:56] apptainer works
[2025-11-20 23:29:56] Set ATHENA_PROC_NUMBER=4
[2025-11-20 23:29:56] Set ATHENA_CORE_NUMBER=4
[2025-11-20 23:29:57] Starting ATLAS job with PandaID=6893855478
[2025-11-20 23:29:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:54:20]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:54:20] 2025-11-21 21:34:49,479 | INFO     | time since job start (83078s) is within the limit (172800.0s)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,480 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 22:54:20] 2025-11-21 21:34:49,488 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2593.987725
[2025-11-21 22:54:20] 2025-11-21 21:34:49,496 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6893855478/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,497 | INFO     | extracted standard info from prmon json
[2025-11-21 22:54:20] 2025-11-21 21:34:49,497 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:54:20] 2025-11-21 21:34:49,498 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:54:20] 2025-11-21 21:34:49,523 | INFO     | fitting pss+swap vs Time
[2025-11-21 22:54:20] 2025-11-21 21:34:49,525 | INFO     | sum of square deviations: 783449411392.4803
[2025-11-21 22:54:20] 2025-11-21 21:34:49,577 | INFO     | sum of deviations: 2000057930946.331
[2025-11-21 22:54:20] 2025-11-21 21:34:49,577 | INFO     | mean x: 1763719349.5543318
[2025-11-21 22:54:20] 2025-11-21 21:34:49,577 | INFO     | mean y: 2308582.1306901616
[2025-11-21 22:54:20] 2025-11-21 21:34:49,578 | INFO     | intersect: -4500267872.384601
[2025-11-21 22:54:20] 2025-11-21 21:34:49,580 | INFO     | chi2: 5.150021015033899
[2025-11-21 22:54:20] 2025-11-21 21:34:49,582 | INFO     | sum of square deviations: 774852798359.9658
[2025-11-21 22:54:20] 2025-11-21 21:34:49,633 | INFO     | sum of deviations: 2358482158016.18
[2025-11-21 22:54:20] 2025-11-21 21:34:49,633 | INFO     | mean x: 1763719197.054532
[2025-11-21 22:54:20] 2025-11-21 21:34:49,634 | INFO     | mean y: 2314940.8489314667
[2025-11-21 22:54:20] 2025-11-21 21:34:49,634 | INFO     | intersect: -5366059886.999733
[2025-11-21 22:54:20] 2025-11-21 21:34:49,636 | INFO     | chi2: 2.1556142592606857
[2025-11-21 22:54:20] 2025-11-21 21:34:49,636 | INFO     | current chi2=2.1556142592606857 (change=58.14358324037836 %)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,638 | INFO     | sum of square deviations: 766319302789.9492
[2025-11-21 22:54:20] 2025-11-21 21:34:49,689 | INFO     | sum of deviations: 2420876066150.8696
[2025-11-21 22:54:20] 2025-11-21 21:34:49,689 | INFO     | mean x: 1763719044.5547338
[2025-11-21 22:54:20] 2025-11-21 21:34:49,689 | INFO     | mean y: 2316054.4881656803
[2025-11-21 22:54:20] 2025-11-21 21:34:49,689 | INFO     | intersect: -5569441314.5773325
[2025-11-21 22:54:20] 2025-11-21 21:34:49,691 | INFO     | chi2: 1.9741456362654608
[2025-11-21 22:54:20] 2025-11-21 21:34:49,691 | INFO     | current chi2=1.9741456362654608 (change=8.418418194054047 %)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,692 | INFO     | right removable region: 1351
[2025-11-21 22:54:20] 2025-11-21 21:34:49,694 | INFO     | sum of square deviations: 774852753219.9657
[2025-11-21 22:54:20] 2025-11-21 21:34:49,745 | INFO     | sum of deviations: 1742992226981.1577
[2025-11-21 22:54:20] 2025-11-21 21:34:49,745 | INFO     | mean x: 1763719502.054532
[2025-11-21 22:54:20] 2025-11-21 21:34:49,745 | INFO     | mean y: 2313136.7546057478
[2025-11-21 22:54:20] 2025-11-21 21:34:49,745 | INFO     | intersect: -3965085017.1284924
[2025-11-21 22:54:20] 2025-11-21 21:34:49,747 | INFO     | chi2: 3.2804225635867086
[2025-11-21 22:54:20] 2025-11-21 21:34:49,747 | INFO     | current chi2=3.2804225635867086 (change=36.30273441583004 %)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,749 | INFO     | sum of square deviations: 766319212509.9496
[2025-11-21 22:54:20] 2025-11-21 21:34:49,800 | INFO     | sum of deviations: 1724382541595.377
[2025-11-21 22:54:20] 2025-11-21 21:34:49,800 | INFO     | mean x: 1763719654.5547338
[2025-11-21 22:54:20] 2025-11-21 21:34:49,801 | INFO     | mean y: 2313469.042159763
[2025-11-21 22:54:20] 2025-11-21 21:34:49,801 | INFO     | intersect: -3966433928.8228316
[2025-11-21 22:54:20] 2025-11-21 21:34:49,803 | INFO     | chi2: 3.2789629148196466
[2025-11-21 22:54:20] 2025-11-21 21:34:49,803 | INFO     | current chi2=3.2789629148196466 (change=0.04449575439653167 %)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,803 | INFO     | left removable region: 20
[2025-11-21 22:54:20] 2025-11-21 21:34:49,805 | INFO     | sum of square deviations: 731162435055.8867
[2025-11-21 22:54:20] 2025-11-21 21:34:49,854 | INFO     | sum of deviations: 2123936621418.3997
[2025-11-21 22:54:20] 2025-11-21 21:34:49,854 | INFO     | mean x: 1763719624.0555973
[2025-11-21 22:54:20] 2025-11-21 21:34:49,854 | INFO     | mean y: 2321550.845980466
[2025-11-21 22:54:20] 2025-11-21 21:34:49,855 | INFO     | intersect: -5121066248.965761
[2025-11-21 22:54:20] 2025-11-21 21:34:49,856 | INFO     | chi2: 0.07021401987521049
[2025-11-21 22:54:20] 2025-11-21 21:34:49,857 | INFO     | current memory leak: 2.90 B/s (using 1331 data points, chi2=0.07)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,858 | INFO     | could have reported an average CPU frequency of 2585 MHz (49 samples)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,858 | INFO     | ..............................
[2025-11-21 22:54:20] 2025-11-21 21:34:49,858 | INFO     | . Timing measurements:
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . get job = 0 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . initial setup = 1 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . payload setup = 7 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . stage-in = 0 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . payload execution = 83039 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . stage-out = 2 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | . log creation = 0 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,859 | INFO     | ..............................
[2025-11-21 22:54:20] 2025-11-21 21:34:49,973 | INFO     | 
[2025-11-21 22:54:20] 2025-11-21 21:34:49,974 | INFO     | job summary report
[2025-11-21 22:54:20] 2025-11-21 21:34:49,974 | INFO     | --------------------------------------------------
[2025-11-21 22:54:20] 2025-11-21 21:34:49,974 | INFO     | PanDA job id: 6893855478
[2025-11-21 22:54:20] 2025-11-21 21:34:49,974 | INFO     | task id: 47523449
[2025-11-21 22:54:20] 2025-11-21 21:34:49,974 | INFO     | errors: (none)
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | pilot state: finished 
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | transexitcode: 0
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | exeerrorcode: 0
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | exeerrordiag: 
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | exitcode: 0
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | exitmsg: OK
[2025-11-21 22:54:20] 2025-11-21 21:34:49,975 | INFO     | cpuconsumptiontime: 312631 s
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | nevents: 1000
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | neventsw: 0
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | pid: 1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | pgrp: 1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | corecount: 4
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | event service: False
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | sizes: {0: 2298647, 1: 2298846, 4: 2299108, 11: 2299136, 83051: 2363434, 83054: 2372450, 83055: 2372634, 83063: 2372880}
[2025-11-21 22:54:20] 2025-11-21 21:34:49,976 | INFO     | --------------------------------------------------
[2025-11-21 22:54:20] 2025-11-21 21:34:49,977 | INFO     | 
[2025-11-21 22:54:20] 2025-11-21 21:34:49,977 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-11-21 22:54:20] 2025-11-21 21:34:49,998 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,998 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,998 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,998 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:49,999 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,000 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:54:20] 2025-11-21 21:34:50,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,001 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:54:20] 2025-11-21 21:34:50,001 | INFO     | job 6893855478 has completed (purged errors)
[2025-11-21 22:54:20] 2025-11-21 21:34:50,001 | INFO     | overall cleanup function is called
[2025-11-21 22:54:20] 2025-11-21 21:34:51,015 | INFO     | --- collectZombieJob: --- 10, [1377754]
[2025-11-21 22:54:20] 2025-11-21 21:34:51,015 | INFO     | zombie collector waiting for pid 1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:51,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:54:20] 2025-11-21 21:34:51,015 | INFO     | collected zombie processes
[2025-11-21 22:54:20] 2025-11-21 21:34:51,015 | INFO     | will attempt to kill all subprocesses of pid=1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:51,374 | INFO     | process IDs to be killed: [1377754] (in reverse order)
[2025-11-21 22:54:20] 2025-11-21 21:34:51,460 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:54:20] 2025-11-21 21:34:51,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:54:20] 2025-11-21 21:34:51,470 | INFO     | did not find any defunct processes belonging to 1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:51,480 | INFO     | did not find any defunct processes belonging to 1377754
[2025-11-21 22:54:20] 2025-11-21 21:34:51,482 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:54:20] 2025-11-21 21:34:51,482 | INFO     | ready for new job
[2025-11-21 22:54:20] 2025-11-21 21:34:51,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:54:20] 2025-11-21 21:34:51,489 | INFO     | ***************************************
[2025-11-21 22:54:20] 2025-11-21 21:34:51,489 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:54:20] 2025-11-21 21:34:51,490 | INFO     | ***************************************
[2025-11-21 22:54:20] 2025-11-21 21:34:51,490 | INFO     | 
[2025-11-21 22:54:20] 2025-11-21 21:34:51,492 | INFO     | architecture information:
[2025-11-21 22:54:20] 2025-11-21 21:34:51,493 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:54:20] 2025-11-21 21:34:51,508 | INFO     | cat /etc/os-release:
[2025-11-21 22:54:20] NAME="CentOS Linux"
[2025-11-21 22:54:20] VERSION="7 (Core)"
[2025-11-21 22:54:20] ID="centos"
[2025-11-21 22:54:20] ID_LIKE="rhel fedora"
[2025-11-21 22:54:20] VERSION_ID="7"
[2025-11-21 22:54:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:54:20] ANSI_COLOR="0;31"
[2025-11-21 22:54:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:54:20] HOME_URL="https://www.centos.org/"
[2025-11-21 22:54:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:54:20] 
[2025-11-21 22:54:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:54:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:54:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:54:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:54:20] 
[2025-11-21 22:54:20] 2025-11-21 21:34:51,508 | INFO     | ***************************************
[2025-11-21 22:54:20] 2025-11-21 21:34:52,011 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | INFO     | sufficient remaining disk space (1668181655552 B)
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | INFO     | update_server=False
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:54:20] 2025-11-21 21:34:52,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:54:20] 2025-11-21 21:34:52,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:54:20] 2025-11-21 21:34:52,304 | INFO     | all payload control threads have been joined
[2025-11-21 22:54:20] 2025-11-21 21:34:52,349 | INFO     | all data control threads have been joined
[2025-11-21 22:54:20] 2025-11-21 21:34:52,358 | INFO     | all job control threads have been joined
[2025-11-21 22:54:20] 2025-11-21 21:34:52,426 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 22:54:20] 2025-11-21 21:34:52,426 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 22:54:20] 2025-11-21 21:34:52,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:54:20] 2025-11-21 21:34:52,427 | INFO     | will abort loop
[2025-11-21 22:54:20] 2025-11-21 21:34:53,027 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,114 | INFO     | [job] validate thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,309 | INFO     | [payload] control thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,355 | INFO     | [data] control thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,363 | INFO     | [job] control thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,431 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,505 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:53,642 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,027 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,057 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,162 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,340 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,381 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:54,981 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:54:20] 2025-11-21 21:34:55,986 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:34:56,225 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:54:20] 2025-11-21 21:35:23,010 | INFO     | PID=1370988 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 22:54:20] 2025-11-21 21:35:23,010 | INFO     | .. there are 3 such processes running
[2025-11-21 22:54:20] 2025-11-21 21:35:23,011 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:54:20] 2025-11-21 21:35:23,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:54:20] 2025-11-21 21:35:23,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:54:20] 2025-11-21 21:35:31,039 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:54:20] 2025-11-21 21:35:31,994 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23327001278272)>', '<ExcThread(monitor, started 23326695073536)>']
[2025-11-21 22:54:20] 2025-11-21 21:35:32,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:54:20] 2025-11-21 21:35:32,057 | INFO     | [monitor] control thread has ended
[2025-11-21 22:54:20] 2025-11-21 21:35:37,019 | INFO     | all workflow threads have been joined
[2025-11-21 22:54:20] 2025-11-21 21:35:37,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:54:20] 2025-11-21 21:35:37,020 | INFO     | traces error code: 0
[2025-11-21 22:54:20] 2025-11-21 21:35:37,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:54:20] 2025-11-21 21:35:37,158 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:54:20] 2025-11-21 21:35:37,160 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:54:20] 2025-11-21 21:35:37,162 [wrapper] pilotpid: 1370988
[2025-11-21 22:54:20] 2025-11-21 21:35:37,164 [wrapper] Pilot exit status: 0
[2025-11-21 22:54:20] 2025-11-21 21:35:37,174 [wrapper] pandaids: 6893855478
[2025-11-21 22:54:20] 2025-11-21 21:35:37,232 [wrapper] cleanup supervisor_pilot 2348858 1370989
[2025-11-21 22:54:20] 2025-11-21 21:35:37,234 [wrapper] Test setup, not cleaning
[2025-11-21 22:54:20] 2025-11-21 21:35:37,236 [wrapper] apfmon messages muted
[2025-11-21 22:54:20] 2025-11-21 21:35:37,239 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:54:20] 2025-11-21 21:35:37,241 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:54:20]  *** Error codes and diagnostics ***
[2025-11-21 22:54:20]     "exeErrorCode": 0,
[2025-11-21 22:54:20]     "exeErrorDiag": "",
[2025-11-21 22:54:20]     "pilotErrorCode": 0,
[2025-11-21 22:54:20]     "pilotErrorDiag": "",
[2025-11-21 22:54:20]  *** Listing of results directory ***
[2025-11-21 22:54:20] total 1319236
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:36 queuedata.json
[2025-11-21 22:54:20] -rwx------ 1 boinc boinc     36292 Nov 20 13:37 runpilot2-wrapper.sh
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc       100 Nov 20 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:54:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 21:54 run_atlas
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc       105 Nov 20 21:54 job.xml
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc 408705388 Nov 20 23:29 EVNT.47493127._000446.pool.root.1
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc      6419 Nov 20 23:29 init_data.xml
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:29 start_atlas.sh
[2025-11-21 22:54:20] drwxrwx--x 2 boinc boinc      4096 Nov 20 23:29 shared
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc    590103 Nov 20 23:29 input.tar.gz
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc         0 Nov 20 23:29 boinc_lockfile
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc      2786 Nov 20 23:29 pandaJob.out
[2025-11-21 22:54:20] -rw------- 1 boinc boinc    989825 Nov 20 23:30 agis_schedconf.cvmfs.json
[2025-11-21 22:54:20] drwx------ 5 boinc boinc      4096 Nov 20 23:30 pilot3
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc       530 Nov 21 22:23 boinc_task_state.xml
[2025-11-21 22:54:20] -rw------- 1 boinc boinc 911122564 Nov 21 22:33 HITS.47523449._004459.pool.root.1
[2025-11-21 22:54:20] -rw------- 1 boinc boinc      1044 Nov 21 22:34 memory_monitor_summary.json
[2025-11-21 22:54:20] -rw------- 1 boinc boinc   1526164 Nov 21 22:34 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:54:20] -rw------- 1 boinc boinc   1996016 Nov 21 22:34 log.47523449._004459.job.log.tgz.1
[2025-11-21 22:54:20] -rw------- 1 boinc boinc      8645 Nov 21 22:34 heartbeat.json
[2025-11-21 22:54:20] -rw------- 1 boinc boinc        95 Nov 21 22:35 pilot_heartbeat.json
[2025-11-21 22:54:20] -rw------- 1 boinc boinc      5020 Nov 21 22:35 pilotlog.txt
[2025-11-21 22:54:20] -rw------- 1 boinc boinc  11577117 Nov 21 22:35 log.47523449._004459.job.log.1
[2025-11-21 22:54:20] -rw------- 1 boinc boinc       353 Nov 21 22:35 output.list
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc       620 Nov 21 22:35 runtime_log
[2025-11-21 22:54:20] -rw------- 1 boinc boinc  13588480 Nov 21 22:35 result.tar.gz
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc      9206 Nov 21 22:35 runtime_log.err
[2025-11-21 22:54:20] -rw------- 1 boinc boinc       671 Nov 21 22:35 3avMDmU5Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIdGKDm5xXVXm.diag
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc        27 Nov 21 22:54 wrapper_checkpoint.txt
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc      8192 Nov 21 22:54 boinc_mmap_file
[2025-11-21 22:54:20] -rw-r--r-- 1 boinc boinc     21094 Nov 21 22:54 stderr.txt
[2025-11-21 22:54:20] HITS file was successfully produced:
[2025-11-21 22:54:20] -rw------- 1 boinc boinc 911122564 Nov 21 22:33 shared/HITS.pool.root.1
[2025-11-21 22:54:20]  *** Contents of shared directory: ***
[2025-11-21 22:54:20] total 1302776
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc 408705388 Nov 20 23:29 ATLAS.root_0
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc     15847 Nov 20 23:29 start_atlas.sh
[2025-11-21 22:54:20] -rw-r--r-- 2 boinc boinc    590103 Nov 20 23:29 input.tar.gz
[2025-11-21 22:54:20] -rw------- 1 boinc boinc 911122564 Nov 21 22:33 HITS.pool.root.1
[2025-11-21 22:54:20] -rw------- 1 boinc boinc  13588480 Nov 21 22:35 result.tar.gz
22:54:22 (1365947): run_atlas exited; CPU time 315717.130972
22:54:22 (1365947): called boinc_finish(0)

</stderr_txt>
]]>

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