Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:04:59 (6430): wrapper (7.7.26015): starting
02:04:59 (6430): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:04:59] Arguments: --nthreads 8
[2025-11-24 02:04:59] Threads: 8
[2025-11-24 02:04:59] Checking for CVMFS
[2025-11-24 02:04:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:05:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:05:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:05:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:05:01] 2.11.2.0 19422 281786 142488 153227 2 230 19772953 25165824 4573 130560 2 137189711 99.874 81171234 3194 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-24 02:05:01] CVMFS is ok
[2025-11-24 02:05:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:05:01] Checking for apptainer binary...
[2025-11-24 02:05:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:05:01] Running /usr/bin/apptainer --version
[2025-11-24 02:05:01] apptainer version 1.3.2-1.el7
[2025-11-24 02:05:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:05:03] cg-vwn320.simple-grid.lan
[2025-11-24 02:05:03] apptainer works
[2025-11-24 02:05:03] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:05:03] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:05:04] Starting ATLAS job with PandaID=6893856265
[2025-11-24 02:05:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:10:14]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:10:14] 2025-11-25 00:09:28,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:10:14] 2025-11-25 00:09:29,761 | INFO     | time since job start (82859s) is within the limit (172800.0s)
[2025-11-25 01:10:14] 2025-11-25 00:09:30,891 | INFO     | PID=10212 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:10:14] 2025-11-25 00:09:30,891 | INFO     | .. there are 2 such processes running
[2025-11-25 01:10:14] 2025-11-25 00:09:30,951 | INFO     | monitor loop #5550: job 0:6893856265 is in state 'finished'
[2025-11-25 01:10:14] 2025-11-25 00:09:30,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:10:14] 2025-11-25 00:09:31,892 | INFO     | time since job start (82861s) is within the limit (172800.0s)
[2025-11-25 01:10:14] 2025-11-25 00:09:32,503 [wrapper] supervise_pilot (15 min periods counter: 93)
[2025-11-25 01:10:14] 2025-11-25 00:09:33,457 | INFO     | monitor loop #5551: job 0:6893856265 is in state 'finished'
[2025-11-25 01:10:14] 2025-11-25 00:09:33,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:10:14] 2025-11-25 00:09:33,899 | INFO     | time since job start (82863s) is within the limit (172800.0s)
[2025-11-25 01:10:14] 2025-11-25 00:09:35,906 | INFO     | time since job start (82865s) is within the limit (172800.0s)
[2025-11-25 01:10:14] 2025-11-25 00:09:35,963 | INFO     | monitor loop #5552: job 0:6893856265 is in state 'finished'
[2025-11-25 01:10:14] 2025-11-25 00:09:35,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,441 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:10:14] 2025-11-25 00:09:36,443 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-25 01:10:14] 2025-11-25 00:09:36,446 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893856265/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,447 | INFO     | extracted standard info from prmon json
[2025-11-25 01:10:14] 2025-11-25 00:09:36,447 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:10:14] 2025-11-25 00:09:36,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:10:14] 2025-11-25 00:09:36,486 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:10:14] 2025-11-25 00:09:36,489 | INFO     | sum of square deviations: 759533391063.7183
[2025-11-25 01:10:14] 2025-11-25 00:09:36,562 | INFO     | sum of deviations: 3458731831508.341
[2025-11-25 01:10:14] 2025-11-25 00:09:36,562 | INFO     | mean x: 1763988120.698813
[2025-11-25 01:10:14] 2025-11-25 00:09:36,562 | INFO     | mean y: 2819147.8382789316
[2025-11-25 01:10:14] 2025-11-25 00:09:36,562 | INFO     | intersect: -8029957205.705508
[2025-11-25 01:10:14] 2025-11-25 00:09:36,564 | INFO     | chi2: 30.499975416972966
[2025-11-25 01:10:14] 2025-11-25 00:09:36,566 | INFO     | sum of square deviations: 751113391171.5063
[2025-11-25 01:10:14] 2025-11-25 00:09:36,615 | INFO     | sum of deviations: 3898609139893.588
[2025-11-25 01:10:14] 2025-11-25 00:09:36,616 | INFO     | mean x: 1763987968.2032762
[2025-11-25 01:10:14] 2025-11-25 00:09:36,616 | INFO     | mean y: 2827113.730454207
[2025-11-25 01:10:14] 2025-11-25 00:09:36,616 | INFO     | intersect: -9153046947.805645
[2025-11-25 01:10:14] 2025-11-25 00:09:36,618 | INFO     | chi2: 27.315991730349626
[2025-11-25 01:10:14] 2025-11-25 00:09:36,618 | INFO     | current chi2=27.315991730349626 (change=10.439299189898627 %)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,618 | INFO     | right removable region: 1342
[2025-11-25 01:10:14] 2025-11-25 00:09:36,620 | INFO     | sum of square deviations: 751112405411.5055
[2025-11-25 01:10:14] 2025-11-25 00:09:36,708 | INFO     | sum of deviations: 2884500350203.711
[2025-11-25 01:10:14] 2025-11-25 00:09:36,709 | INFO     | mean x: 1763988273.2032762
[2025-11-25 01:10:14] 2025-11-25 00:09:36,709 | INFO     | mean y: 2829547.0193596426
[2025-11-25 01:10:14] 2025-11-25 00:09:36,709 | INFO     | intersect: -6771422555.796659
[2025-11-25 01:10:14] 2025-11-25 00:09:36,711 | INFO     | chi2: 25.44179378275532
[2025-11-25 01:10:14] 2025-11-25 00:09:36,711 | INFO     | current chi2=25.44179378275532 (change=16.584215446294472 %)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,711 | INFO     | left removable region: 10
[2025-11-25 01:10:14] 2025-11-25 00:09:36,714 | INFO     | sum of square deviations: 732806973772.4486
[2025-11-25 01:10:14] 2025-11-25 00:09:36,795 | INFO     | sum of deviations: 2904668793920.054
[2025-11-25 01:10:14] 2025-11-25 00:09:36,796 | INFO     | mean x: 1763988242.7132132
[2025-11-25 01:10:14] 2025-11-25 00:09:36,796 | INFO     | mean y: 2849152.7304804805
[2025-11-25 01:10:14] 2025-11-25 00:09:36,796 | INFO     | intersect: -6989171645.1529045
[2025-11-25 01:10:14] 2025-11-25 00:09:36,798 | INFO     | chi2: 17.231183308415183
[2025-11-25 01:10:14] 2025-11-25 00:09:36,798 | INFO     | current memory leak: 3.96 B/s (using 1332 data points, chi2=17.23)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,800 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-25 01:10:14] 2025-11-25 00:09:36,800 | INFO     | ..............................
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . Timing measurements:
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . get job = 0 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . initial setup = 4 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . payload setup = 155 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . stage-in = 0 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . payload execution = 82378 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . stage-out = 9 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | . log creation = 2 s
[2025-11-25 01:10:14] 2025-11-25 00:09:36,801 | INFO     | ..............................
[2025-11-25 01:10:14] 2025-11-25 00:09:37,047 | INFO     | 
[2025-11-25 01:10:14] 2025-11-25 00:09:37,047 | INFO     | job summary report
[2025-11-25 01:10:14] 2025-11-25 00:09:37,047 | INFO     | --------------------------------------------------
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | PanDA job id: 6893856265
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | task id: 47523449
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | errors: (none)
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | pilot state: finished 
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | transexitcode: 0
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | exeerrorcode: 0
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | exeerrordiag: 
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | exitcode: 0
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | exitmsg: OK
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | cpuconsumptiontime: 329076 s
[2025-11-25 01:10:14] 2025-11-25 00:09:37,048 | INFO     | nevents: 1000
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | neventsw: 0
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | pid: 16775
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | pgrp: 16775
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | corecount: 8
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | event service: False
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298863, 13: 2298863, 23: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 66: 2299159, 77: 2299187, 88: 2299243, 99: 2299551, 10
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | --------------------------------------------------
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | 
[2025-11-25 01:10:14] 2025-11-25 00:09:37,049 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-25 01:10:14] 2025-11-25 00:09:37,650 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,652 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:10:14] 2025-11-25 00:09:37,653 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,653 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:10:14] 2025-11-25 00:09:37,653 | INFO     | job 6893856265 has completed (purged errors)
[2025-11-25 01:10:14] 2025-11-25 00:09:37,653 | INFO     | overall cleanup function is called
[2025-11-25 01:10:14] 2025-11-25 00:09:38,674 | INFO     | --- collectZombieJob: --- 10, [16775]
[2025-11-25 01:10:14] 2025-11-25 00:09:38,674 | INFO     | zombie collector waiting for pid 16775
[2025-11-25 01:10:14] 2025-11-25 00:09:38,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:10:14] 2025-11-25 00:09:38,674 | INFO     | collected zombie processes
[2025-11-25 01:10:14] 2025-11-25 00:09:38,675 | INFO     | will attempt to kill all subprocesses of pid=16775
[2025-11-25 01:10:14] 2025-11-25 00:09:38,746 | INFO     | process IDs to be killed: [16775] (in reverse order)
[2025-11-25 01:10:14] 2025-11-25 00:09:39,922 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:10:14] 2025-11-25 00:09:39,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:10:14] 2025-11-25 00:09:39,924 | INFO     | did not find any defunct processes belonging to 16775
[2025-11-25 01:10:14] 2025-11-25 00:09:39,930 | INFO     | did not find any defunct processes belonging to 16775
[2025-11-25 01:10:14] 2025-11-25 00:09:39,933 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:10:14] 2025-11-25 00:09:39,933 | INFO     | ready for new job
[2025-11-25 01:10:14] 2025-11-25 00:09:39,933 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:10:14] 2025-11-25 00:09:39,940 | INFO     | ***************************************
[2025-11-25 01:10:14] 2025-11-25 00:09:39,940 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:10:14] 2025-11-25 00:09:39,940 | INFO     | ***************************************
[2025-11-25 01:10:14] 2025-11-25 00:09:39,940 | INFO     | 
[2025-11-25 01:10:14] 2025-11-25 00:09:39,941 | INFO     | pilot is running in a VM
[2025-11-25 01:10:14] 2025-11-25 00:09:39,941 | INFO     | architecture information:
[2025-11-25 01:10:14] 2025-11-25 00:09:39,942 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:10:14] 2025-11-25 00:09:40,149 | INFO     | cat /etc/os-release:
[2025-11-25 01:10:14] NAME="CentOS Linux"
[2025-11-25 01:10:14] VERSION="7 (Core)"
[2025-11-25 01:10:14] ID="centos"
[2025-11-25 01:10:14] ID_LIKE="rhel fedora"
[2025-11-25 01:10:14] VERSION_ID="7"
[2025-11-25 01:10:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:10:14] ANSI_COLOR="0;31"
[2025-11-25 01:10:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:10:14] HOME_URL="https://www.centos.org/"
[2025-11-25 01:10:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:10:14] 
[2025-11-25 01:10:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:10:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:10:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:10:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:10:14] 
[2025-11-25 01:10:14] 2025-11-25 00:09:40,150 | INFO     | ***************************************
[2025-11-25 01:10:14] 2025-11-25 00:09:40,653 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-25 01:10:14] 2025-11-25 00:09:40,852 | INFO     | sufficient remaining disk space (492115591168 B)
[2025-11-25 01:10:14] 2025-11-25 00:09:40,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:10:14] 2025-11-25 00:09:40,852 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:10:14] 2025-11-25 00:09:40,852 | INFO     | update_server=False
[2025-11-25 01:10:14] 2025-11-25 00:09:40,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:10:14] 2025-11-25 00:09:40,978 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 01:10:14] 2025-11-25 00:09:40,978 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 01:10:14] 2025-11-25 00:09:40,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:10:14] 2025-11-25 00:09:40,979 | INFO     | will abort loop
[2025-11-25 01:10:14] 2025-11-25 00:09:41,271 | INFO     | all data control threads have been joined
[2025-11-25 01:10:14] 2025-11-25 00:09:41,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:10:14] 2025-11-25 00:09:41,859 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:41,918 | INFO     | all job control threads have been joined
[2025-11-25 01:10:14] 2025-11-25 00:09:41,948 | INFO     | all payload control threads have been joined
[2025-11-25 01:10:14] 2025-11-25 00:09:41,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:10:14] 2025-11-25 00:09:41,984 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,034 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,164 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,277 | INFO     | [data] control thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,475 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:10:14] 2025-11-25 00:09:42,802 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,814 | INFO     | [job] validate thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,895 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,924 | INFO     | [job] control thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,954 | INFO     | [payload] control thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:42,977 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:43,040 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:43,442 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:46,682 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:10:14] 2025-11-25 00:09:54,204 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:10:14] 2025-11-25 00:09:55,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139898469852992)>', '<ExcThread(monitor, started 139897956464384)>']
[2025-11-25 01:10:14] 2025-11-25 00:10:00,352 | INFO     | all workflow threads have been joined
[2025-11-25 01:10:14] 2025-11-25 00:10:00,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:10:14] 2025-11-25 00:10:00,353 | INFO     | traces error code: 0
[2025-11-25 01:10:14] 2025-11-25 00:10:00,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:10:14] 2025-11-25 00:10:09,061 | INFO     | PID=10212 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 01:10:14] 2025-11-25 00:10:09,061 | INFO     | .. there are 2 such processes running
[2025-11-25 01:10:14] 2025-11-25 00:10:09,062 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:10:14] 2025-11-25 00:10:09,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:10:14] 2025-11-25 00:10:09,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:10:14] 2025-11-25 00:10:09,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:10:14] 2025-11-25 00:10:09,063 | INFO     | [monitor] control thread has ended
[2025-11-25 01:10:14] 2025-11-25 00:10:09,489 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:10:14] 2025-11-25 00:10:09,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:10:14] 2025-11-25 00:10:09,662 [wrapper] pilotpid: 10212
[2025-11-25 01:10:14] 2025-11-25 00:10:09,733 [wrapper] Pilot exit status: 0
[2025-11-25 01:10:14] 2025-11-25 00:10:10,055 [wrapper] pandaids: 6893856265
[2025-11-25 01:10:14] 2025-11-25 00:10:10,762 [wrapper] cleanup supervisor_pilot 21318 10213
[2025-11-25 01:10:14] 2025-11-25 00:10:10,857 [wrapper] Test setup, not cleaning
[2025-11-25 01:10:14] 2025-11-25 00:10:10,970 [wrapper] apfmon messages muted
[2025-11-25 01:10:14] 2025-11-25 00:10:11,063 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:10:14] 2025-11-25 00:10:11,187 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:10:14]  *** Error codes and diagnostics ***
[2025-11-25 01:10:14]     "exeErrorCode": 0,
[2025-11-25 01:10:14]     "exeErrorDiag": "",
[2025-11-25 01:10:14]     "pilotErrorCode": 0,
[2025-11-25 01:10:14]     "pilotErrorDiag": "",
[2025-11-25 01:10:14]  *** Listing of results directory ***
[2025-11-25 01:10:14] total 1308988
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-25 01:10:14] -rwx------. 1 boinc boinc     36292 Nov 20 13:49 runpilot2-wrapper.sh
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:49 queuedata.json
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc       100 Nov 24 02:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:10:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 02:04 run_atlas
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc       105 Nov 24 02:04 job.xml
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc 408292867 Nov 24 02:04 EVNT.47493127._000461.pool.root.1
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc      6391 Nov 24 02:04 init_data.xml
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:04 start_atlas.sh
[2025-11-25 01:10:14] drwxrwx--x. 2 boinc boinc        68 Nov 24 02:04 shared
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc    590093 Nov 24 02:04 input.tar.gz
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc         0 Nov 24 02:04 boinc_lockfile
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc      2786 Nov 24 02:05 pandaJob.out
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc    989786 Nov 24 02:08 agis_schedconf.cvmfs.json
[2025-11-25 01:10:14] drwx------. 5 boinc boinc      4096 Nov 24 02:08 pilot3
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc       533 Nov 25 00:40 boinc_task_state.xml
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc 901219235 Nov 25 01:06 HITS.47523449._004604.pool.root.1
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc      1031 Nov 25 01:07 memory_monitor_summary.json
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc   1516227 Nov 25 01:07 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc   2459204 Nov 25 01:07 log.47523449._004604.job.log.tgz.1
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc      8626 Nov 25 01:09 heartbeat.json
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc      8192 Nov 25 01:09 boinc_mmap_file
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc        29 Nov 25 01:09 wrapper_checkpoint.txt
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc        95 Nov 25 01:10 pilot_heartbeat.json
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc       820 Nov 25 01:10 pilotlog.txt
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc  11036978 Nov 25 01:10 log.47523449._004604.job.log.1
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc       353 Nov 25 01:10 output.list
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc       620 Nov 25 01:10 runtime_log
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc  13516800 Nov 25 01:10 result.tar.gz
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc       662 Nov 25 01:10 STIMDmcHJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVeGKDm8BDTTn.diag
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc      8817 Nov 25 01:10 runtime_log.err
[2025-11-25 01:10:14] -rw-r--r--. 1 boinc boinc     21473 Nov 25 01:10 stderr.txt
[2025-11-25 01:10:14] HITS file was successfully produced:
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc 901219235 Nov 25 01:06 shared/HITS.pool.root.1
[2025-11-25 01:10:14]  *** Contents of shared directory: ***
[2025-11-25 01:10:14] total 1292620
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc 408292867 Nov 24 02:04 ATLAS.root_0
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc     15847 Nov 24 02:04 start_atlas.sh
[2025-11-25 01:10:14] -rw-r--r--. 2 boinc boinc    590093 Nov 24 02:04 input.tar.gz
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc 901219235 Nov 25 01:06 HITS.pool.root.1
[2025-11-25 01:10:14] -rw-------. 1 boinc boinc  13516800 Nov 25 01:10 result.tar.gz
01:10:15 (6430): run_atlas exited; CPU time 329339.647275
01:10:15 (6430): called boinc_finish(0)

</stderr_txt>
]]>

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