Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:14:19 (2769205): wrapper (7.7.26015): starting
17:14:19 (2769205): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 17:14:19] Arguments: --nthreads 4
[2025-11-21 17:14:19] Threads: 4
[2025-11-21 17:14:19] Checking for CVMFS
[2025-11-21 17:14:19] No cvmfs_config command found, will try listing directly
[2025-11-21 17:14:19] CVMFS is ok
[2025-11-21 17:14:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 17:14:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 17:14:19] Further information can be found at the LHC@home message board.
[2025-11-21 17:14:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:14:19] Checking for apptainer binary...
[2025-11-21 17:14:19] which: no apptainer in ((null))
[2025-11-21 17:14:19] apptainer is not installed, using version from CVMFS
[2025-11-21 17:14:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:14:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-21 17:14:19] apptainer works
[2025-11-21 17:14:19] Set ATHENA_PROC_NUMBER=4
[2025-11-21 17:14:19] Set ATHENA_CORE_NUMBER=4
[2025-11-21 17:14:19] Starting ATLAS job with PandaID=6893855179
[2025-11-21 17:14:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 10:06:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 10:06:25] 2025-11-22 09:04:28,801 | INFO     | time since job start (60595s) is within the limit (172800.0s)
[2025-11-22 10:06:25] 2025-11-22 09:04:29,115 | INFO     | monitor loop #4329: job 0:6893855179 is in state 'finished'
[2025-11-22 10:06:25] 2025-11-22 09:04:29,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 10:06:25] 2025-11-22 09:04:29,962 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 10:06:25] 2025-11-22 09:04:29,972 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2751.364640625
[2025-11-22 10:06:25] 2025-11-22 09:04:29,983 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6893855179/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 10:06:25] 2025-11-22 09:04:29,984 | INFO     | extracted standard info from prmon json
[2025-11-22 10:06:25] 2025-11-22 09:04:29,984 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 10:06:25] 2025-11-22 09:04:29,985 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 10:06:25] 2025-11-22 09:04:30,001 | INFO     | fitting pss+swap vs Time
[2025-11-22 10:06:25] 2025-11-22 09:04:30,002 | INFO     | sum of square deviations: 303614401512.96075
[2025-11-22 10:06:25] 2025-11-22 09:04:30,022 | INFO     | sum of deviations: 861956236960.4175
[2025-11-22 10:06:25] 2025-11-22 09:04:30,022 | INFO     | mean x: 1763771965.0453172
[2025-11-22 10:06:25] 2025-11-22 09:04:30,022 | INFO     | mean y: 2308573.4128902317
[2025-11-22 10:06:25] 2025-11-22 09:04:30,022 | INFO     | intersect: -5005010704.825774
[2025-11-22 10:06:25] 2025-11-22 09:04:30,023 | INFO     | chi2: 3.9023590178895775
[2025-11-22 10:06:25] 2025-11-22 09:04:30,025 | INFO     | sum of square deviations: 299051111072.9511
[2025-11-22 10:06:25] 2025-11-22 09:04:30,050 | INFO     | sum of deviations: 1053004385993.7429
[2025-11-22 10:06:25] 2025-11-22 09:04:30,050 | INFO     | mean x: 1763771812.5455465
[2025-11-22 10:06:25] 2025-11-22 09:04:30,051 | INFO     | mean y: 2314954.8279352225
[2025-11-22 10:06:25] 2025-11-22 09:04:30,051 | INFO     | intersect: -6208193502.535832
[2025-11-22 10:06:25] 2025-11-22 09:04:30,052 | INFO     | chi2: 2.1859458496871635
[2025-11-22 10:06:25] 2025-11-22 09:04:30,052 | INFO     | current chi2=2.1859458496871635 (change=43.983989180233394 %)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,053 | INFO     | sum of square deviations: 294533774982.94037
[2025-11-22 10:06:25] 2025-11-22 09:04:30,072 | INFO     | sum of deviations: 1063856634053.4186
[2025-11-22 10:06:25] 2025-11-22 09:04:30,072 | INFO     | mean x: 1763771660.0457783
[2025-11-22 10:06:25] 2025-11-22 09:04:30,072 | INFO     | mean y: 2315318.2573753814
[2025-11-22 10:06:25] 2025-11-22 09:04:30,073 | INFO     | intersect: -6368431743.276721
[2025-11-22 10:06:25] 2025-11-22 09:04:30,074 | INFO     | chi2: 2.1129291148542597
[2025-11-22 10:06:25] 2025-11-22 09:04:30,074 | INFO     | current chi2=2.1129291148542597 (change=3.3402810432542713 %)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,074 | INFO     | right removable region: 982
[2025-11-22 10:06:25] 2025-11-22 09:04:30,075 | INFO     | sum of square deviations: 299051083622.9511
[2025-11-22 10:06:25] 2025-11-22 09:04:30,094 | INFO     | sum of deviations: 669991084638.2104
[2025-11-22 10:06:25] 2025-11-22 09:04:30,094 | INFO     | mean x: 1763772117.5455465
[2025-11-22 10:06:25] 2025-11-22 09:04:30,094 | INFO     | mean y: 2314978.6842105263
[2025-11-22 10:06:25] 2025-11-22 09:04:30,095 | INFO     | intersect: -3949222597.3471036
[2025-11-22 10:06:25] 2025-11-22 09:04:30,096 | INFO     | chi2: 1.98693730692675
[2025-11-22 10:06:25] 2025-11-22 09:04:30,096 | INFO     | current chi2=1.98693730692675 (change=49.08368764078249 %)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,097 | INFO     | sum of square deviations: 294533840617.1191
[2025-11-22 10:06:25] 2025-11-22 09:04:30,116 | INFO     | sum of deviations: 645701621151.1696
[2025-11-22 10:06:25] 2025-11-22 09:04:30,116 | INFO     | mean x: 1763772270.0437436
[2025-11-22 10:06:25] 2025-11-22 09:04:30,116 | INFO     | mean y: 2315798.1820956254
[2025-11-22 10:06:25] 2025-11-22 09:04:30,117 | INFO     | intersect: -3864372700.9136834
[2025-11-22 10:06:25] 2025-11-22 09:04:30,118 | INFO     | chi2: 1.9781495146615782
[2025-11-22 10:06:25] 2025-11-22 09:04:30,118 | INFO     | current chi2=1.9781495146615782 (change=0.44227828601014635 %)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,118 | INFO     | left removable region: 20
[2025-11-22 10:06:25] 2025-11-22 09:04:30,119 | INFO     | sum of square deviations: 276057844052.9989
[2025-11-22 10:06:25] 2025-11-22 09:04:30,137 | INFO     | sum of deviations: 823959268110.1332
[2025-11-22 10:06:25] 2025-11-22 09:04:30,138 | INFO     | mean x: 1763772239.539501
[2025-11-22 10:06:25] 2025-11-22 09:04:30,138 | INFO     | mean y: 2323355.943866944
[2025-11-22 10:06:25] 2025-11-22 09:04:30,138 | INFO     | intersect: -5262067839.275823
[2025-11-22 10:06:25] 2025-11-22 09:04:30,139 | INFO     | chi2: 0.17799205398133336
[2025-11-22 10:06:25] 2025-11-22 09:04:30,139 | INFO     | current memory leak: 2.98 B/s (using 962 data points, chi2=0.18)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,140 | INFO     | could have reported an average CPU frequency of 2709 MHz (37 samples)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | ..............................
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . Timing measurements:
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . get job = 0 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . initial setup = 1 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . payload setup = 8 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . stage-in = 0 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . payload execution = 60557 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . stage-out = 2 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | . log creation = 0 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,141 | INFO     | ..............................
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | 
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | job summary report
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | --------------------------------------------------
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | PanDA job id: 6893855179
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | task id: 47523449
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | errors: (none)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | pilot state: finished 
[2025-11-22 10:06:25] 2025-11-22 09:04:30,233 | INFO     | transexitcode: 0
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | exeerrorcode: 0
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | exeerrordiag: 
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | exitcode: 0
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | exitmsg: OK
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | cpuconsumptiontime: 237688 s
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | nevents: 1000
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | neventsw: 0
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | pid: 2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | pgrp: 2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:30,234 | INFO     | corecount: 4
[2025-11-22 10:06:25] 2025-11-22 09:04:30,236 | INFO     | event service: False
[2025-11-22 10:06:25] 2025-11-22 09:04:30,236 | INFO     | sizes: {0: 2297978, 1: 2298845, 8: 2299107, 12: 2299135, 60569: 2351812, 60572: 2361012, 60579: 2361202}
[2025-11-22 10:06:25] 2025-11-22 09:04:30,236 | INFO     | --------------------------------------------------
[2025-11-22 10:06:25] 2025-11-22 09:04:30,236 | INFO     | 
[2025-11-22 10:06:25] 2025-11-22 09:04:30,236 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,258 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 10:06:25] 2025-11-22 09:04:30,259 | INFO     | job 6893855179 has completed (purged errors)
[2025-11-22 10:06:25] 2025-11-22 09:04:30,259 | INFO     | overall cleanup function is called
[2025-11-22 10:06:25] 2025-11-22 09:04:31,271 | INFO     | --- collectZombieJob: --- 10, [2780599]
[2025-11-22 10:06:25] 2025-11-22 09:04:31,272 | INFO     | zombie collector waiting for pid 2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:31,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 10:06:25] 2025-11-22 09:04:31,272 | INFO     | collected zombie processes
[2025-11-22 10:06:25] 2025-11-22 09:04:31,272 | INFO     | will attempt to kill all subprocesses of pid=2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:31,640 | INFO     | process IDs to be killed: [2780599] (in reverse order)
[2025-11-22 10:06:25] 2025-11-22 09:04:31,747 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 10:06:25] 2025-11-22 09:04:31,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 10:06:25] 2025-11-22 09:04:31,760 | INFO     | did not find any defunct processes belonging to 2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:31,772 | INFO     | did not find any defunct processes belonging to 2780599
[2025-11-22 10:06:25] 2025-11-22 09:04:31,774 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 10:06:25] 2025-11-22 09:04:31,774 | INFO     | ready for new job
[2025-11-22 10:06:25] 2025-11-22 09:04:31,774 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 10:06:25] 2025-11-22 09:04:31,779 | INFO     | ***************************************
[2025-11-22 10:06:25] 2025-11-22 09:04:31,779 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 10:06:25] 2025-11-22 09:04:31,780 | INFO     | ***************************************
[2025-11-22 10:06:25] 2025-11-22 09:04:31,780 | INFO     | 
[2025-11-22 10:06:25] 2025-11-22 09:04:31,784 | INFO     | architecture information:
[2025-11-22 10:06:25] 2025-11-22 09:04:31,784 | INFO     | executing command: cat /etc/os-release
[2025-11-22 10:06:25] 2025-11-22 09:04:31,799 | INFO     | cat /etc/os-release:
[2025-11-22 10:06:25] NAME="CentOS Linux"
[2025-11-22 10:06:25] VERSION="7 (Core)"
[2025-11-22 10:06:25] ID="centos"
[2025-11-22 10:06:25] ID_LIKE="rhel fedora"
[2025-11-22 10:06:25] VERSION_ID="7"
[2025-11-22 10:06:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 10:06:25] ANSI_COLOR="0;31"
[2025-11-22 10:06:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 10:06:25] HOME_URL="https://www.centos.org/"
[2025-11-22 10:06:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 10:06:25] 
[2025-11-22 10:06:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 10:06:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 10:06:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 10:06:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 10:06:25] 
[2025-11-22 10:06:25] 2025-11-22 09:04:31,800 | INFO     | ***************************************
[2025-11-22 10:06:25] 2025-11-22 09:04:32,302 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-22 10:06:25] 2025-11-22 09:04:32,319 | INFO     | sufficient remaining disk space (655953494016 B)
[2025-11-22 10:06:25] 2025-11-22 09:04:32,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 10:06:25] 2025-11-22 09:04:32,320 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 10:06:25] 2025-11-22 09:04:32,320 | INFO     | update_server=False
[2025-11-22 10:06:25] 2025-11-22 09:04:32,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 10:06:25] 2025-11-22 09:04:32,433 | INFO     | all job control threads have been joined
[2025-11-22 10:06:25] 2025-11-22 09:04:32,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:06:25] 2025-11-22 09:04:32,623 | INFO     | aborting loop
[2025-11-22 10:06:25] 2025-11-22 09:04:33,325 | INFO     | [job] retrieve thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:33,400 | INFO     | [data] copytool_in thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:33,419 | INFO     | all data control threads have been joined
[2025-11-22 10:06:25] 2025-11-22 09:04:33,434 | INFO     | [job] control thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:33,442 | INFO     | all payload control threads have been joined
[2025-11-22 10:06:25] 2025-11-22 09:04:33,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 10:06:25] 2025-11-22 09:04:33,628 | INFO     | [job] job monitor thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:33,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 10:06:25] 2025-11-22 09:04:33,969 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,116 | INFO     | [payload] validate_post thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,340 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,384 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,424 | INFO     | [data] control thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,447 | INFO     | [payload] control thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,599 | INFO     | [payload] failed_post thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:34,816 | INFO     | [job] validate thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:35,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 10:06:25] 2025-11-22 09:04:35,524 | INFO     | [data] copytool_out thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:36,249 | INFO     | [job] queue monitor thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:04:37,638 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 10:06:25] 2025-11-22 09:05:02,412 | INFO     | PID=2773270 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 10:06:25] 2025-11-22 09:05:02,412 | INFO     | .. there are 4 such processes running
[2025-11-22 10:06:25] 2025-11-22 09:05:02,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 10:06:25] 2025-11-22 09:05:02,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 10:06:25] 2025-11-22 09:05:02,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 10:06:25] 2025-11-22 09:05:11,856 | INFO     | [monitor] cgroup control has ended
[2025-11-22 10:06:25] 2025-11-22 09:05:12,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22861742151488)>', '<ExcThread(monitor, started 22861299304192)>']
[2025-11-22 10:06:25] 2025-11-22 09:05:13,463 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 10:06:25] 2025-11-22 09:05:13,463 | INFO     | [monitor] control thread has ended
[2025-11-22 10:06:25] 2025-11-22 09:05:18,010 | INFO     | all workflow threads have been joined
[2025-11-22 10:06:25] 2025-11-22 09:05:18,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 10:06:25] 2025-11-22 09:05:18,010 | INFO     | traces error code: 0
[2025-11-22 10:06:25] 2025-11-22 09:05:18,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 10:06:25] 2025-11-22 09:05:18,195 [wrapper] ==== pilot stdout END ====
[2025-11-22 10:06:25] 2025-11-22 09:05:18,199 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 10:06:25] 2025-11-22 09:05:18,202 [wrapper] pilotpid: 2773270
[2025-11-22 10:06:25] 2025-11-22 09:05:18,205 [wrapper] Pilot exit status: 0
[2025-11-22 10:06:25] 2025-11-22 09:05:18,216 [wrapper] pandaids: 6893855179
[2025-11-22 10:06:25] 2025-11-22 09:05:18,299 [wrapper] cleanup supervisor_pilot 3674686 2773271
[2025-11-22 10:06:25] 2025-11-22 09:05:18,302 [wrapper] Test setup, not cleaning
[2025-11-22 10:06:25] 2025-11-22 09:05:18,305 [wrapper] apfmon messages muted
[2025-11-22 10:06:25] 2025-11-22 09:05:18,308 [wrapper] ==== wrapper stdout END ====
[2025-11-22 10:06:25] 2025-11-22 09:05:18,311 [wrapper] ==== wrapper stderr END ====
[2025-11-22 10:06:25]  *** Error codes and diagnostics ***
[2025-11-22 10:06:25]     "exeErrorCode": 0,
[2025-11-22 10:06:25]     "exeErrorDiag": "",
[2025-11-22 10:06:25]     "pilotErrorCode": 0,
[2025-11-22 10:06:25]     "pilotErrorDiag": "",
[2025-11-22 10:06:25]  *** Listing of results directory ***
[2025-11-22 10:06:25] total 1321632
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:29 queuedata.json
[2025-11-22 10:06:25] -rwx------ 1 boinc boinc     36292 Nov 20 13:31 runpilot2-wrapper.sh
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc       100 Nov 21 17:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 10:06:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 17:14 run_atlas
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc       105 Nov 21 17:14 job.xml
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc      6635 Nov 21 17:14 init_data.xml
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc 409761289 Nov 21 17:14 EVNT.47493127._000437.pool.root.1
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc     15847 Nov 21 17:14 start_atlas.sh
[2025-11-22 10:06:25] drwxrwx--x 2 boinc boinc      4096 Nov 21 17:14 shared
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc    590099 Nov 21 17:14 input.tar.gz
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc         0 Nov 21 17:14 boinc_lockfile
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc      2785 Nov 21 17:14 pandaJob.out
[2025-11-22 10:06:25] -rw------- 1 boinc boinc    989817 Nov 21 17:14 agis_schedconf.cvmfs.json
[2025-11-22 10:06:25] drwx------ 5 boinc boinc      4096 Nov 21 17:14 pilot3
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc       531 Nov 22 09:57 boinc_task_state.xml
[2025-11-22 10:06:25] -rw------- 1 boinc boinc 919237768 Nov 22 10:03 HITS.47523449._004362.pool.root.1
[2025-11-22 10:06:25] -rw------- 1 boinc boinc        95 Nov 22 10:04 pilot_heartbeat.json
[2025-11-22 10:06:25] -rw------- 1 boinc boinc      1052 Nov 22 10:04 memory_monitor_summary.json
[2025-11-22 10:06:25] -rw------- 1 boinc boinc   1526164 Nov 22 10:04 agis_ddmendpoints.agis.ALL.json
[2025-11-22 10:06:25] -rw------- 1 boinc boinc   1732951 Nov 22 10:04 log.47523449._004362.job.log.tgz.1
[2025-11-22 10:06:25] -rw------- 1 boinc boinc      8638 Nov 22 10:04 heartbeat.json
[2025-11-22 10:06:25] -rw------- 1 boinc boinc      4833 Nov 22 10:05 pilotlog.txt
[2025-11-22 10:06:25] -rw------- 1 boinc boinc   8480289 Nov 22 10:05 log.47523449._004362.job.log.1
[2025-11-22 10:06:25] -rw------- 1 boinc boinc       353 Nov 22 10:05 output.list
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc       620 Nov 22 10:05 runtime_log
[2025-11-22 10:06:25] -rw------- 1 boinc boinc  10229760 Nov 22 10:05 result.tar.gz
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc      9206 Nov 22 10:05 runtime_log.err
[2025-11-22 10:06:25] -rw------- 1 boinc boinc       673 Nov 22 10:05 fXsKDmU0Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmunHKDmJHisQo.diag
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc        28 Nov 22 10:06 wrapper_checkpoint.txt
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc      8192 Nov 22 10:06 boinc_mmap_file
[2025-11-22 10:06:25] -rw-r--r-- 1 boinc boinc     21108 Nov 22 10:06 stderr.txt
[2025-11-22 10:06:25] HITS file was successfully produced:
[2025-11-22 10:06:25] -rw------- 1 boinc boinc 919237768 Nov 22 10:03 shared/HITS.pool.root.1
[2025-11-22 10:06:25]  *** Contents of shared directory: ***
[2025-11-22 10:06:25] total 1308452
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc 409761289 Nov 21 17:14 ATLAS.root_0
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc     15847 Nov 21 17:14 start_atlas.sh
[2025-11-22 10:06:25] -rw-r--r-- 2 boinc boinc    590099 Nov 21 17:14 input.tar.gz
[2025-11-22 10:06:25] -rw------- 1 boinc boinc 919237768 Nov 22 10:03 HITS.pool.root.1
[2025-11-22 10:06:25] -rw------- 1 boinc boinc  10229760 Nov 22 10:05 result.tar.gz
10:06:26 (2769205): run_atlas exited; CPU time 240001.602363
10:06:26 (2769205): called boinc_finish(0)

</stderr_txt>
]]>

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