Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:28:15 (452): wrapper (7.7.26015): starting
23:28:15 (452): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 23:28:15] Arguments: --nthreads 8
[2025-11-23 23:28:15] Threads: 8
[2025-11-23 23:28:15] Checking for CVMFS
[2025-11-23 23:28:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 23:28:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 23:28:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 23:28:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 23:28:18] 2.11.2.0 21240 281484 144948 153223 1 84 22360292 25165824 4632 130560 105 131278936 99.877 80211210 3098 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 23:28:18] CVMFS is ok
[2025-11-23 23:28:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 23:28:18] Checking for apptainer binary...
[2025-11-23 23:28:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 23:28:18] Running /usr/bin/apptainer --version
[2025-11-23 23:28:18] apptainer version 1.3.2-1.el7
[2025-11-23 23:28:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 23:28:34] cg-vwn384.simple-grid.lan
[2025-11-23 23:28:34] apptainer works
[2025-11-23 23:28:34] Set ATHENA_PROC_NUMBER=8
[2025-11-23 23:28:34] Set ATHENA_CORE_NUMBER=8
[2025-11-23 23:28:34] Starting ATLAS job with PandaID=6893852518
[2025-11-23 23:28:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 21:01:40]  *** The last 200 lines of the pilot log: ***
[2025-11-24 21:01:40] 2025-11-24 20:00:47,496 | INFO     | time since job start (77312s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:49,503 | INFO     | time since job start (77314s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:49,548 | INFO     | monitor loop #5199: job 0:6893852518 is in state 'finished'
[2025-11-24 21:01:40] 2025-11-24 20:00:49,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:01:40] 2025-11-24 20:00:50,663 | INFO     | PID=4309 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:01:40] 2025-11-24 20:00:50,663 | INFO     | .. there are 2 such processes running
[2025-11-24 21:01:40] 2025-11-24 20:00:51,664 | INFO     | time since job start (77316s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:52,057 | INFO     | monitor loop #5200: job 0:6893852518 is in state 'finished'
[2025-11-24 21:01:40] 2025-11-24 20:00:52,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:01:40] 2025-11-24 20:00:53,671 | INFO     | time since job start (77318s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:54,573 | INFO     | monitor loop #5201: job 0:6893852518 is in state 'finished'
[2025-11-24 21:01:40] 2025-11-24 20:00:54,573 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:01:40] 2025-11-24 20:00:55,678 | INFO     | time since job start (77320s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,077 | INFO     | monitor loop #5202: job 0:6893852518 is in state 'finished'
[2025-11-24 21:01:40] 2025-11-24 20:00:57,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,253 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 21:01:40] 2025-11-24 20:00:57,254 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 21:01:40] 2025-11-24 20:00:57,262 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6893852518/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,263 | INFO     | extracted standard info from prmon json
[2025-11-24 21:01:40] 2025-11-24 20:00:57,263 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 21:01:40] 2025-11-24 20:00:57,263 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 21:01:40] 2025-11-24 20:00:57,304 | INFO     | fitting pss+swap vs Time
[2025-11-24 21:01:40] 2025-11-24 20:00:57,306 | INFO     | sum of square deviations: 617328503798.0282
[2025-11-24 21:01:40] 2025-11-24 20:00:57,384 | INFO     | sum of deviations: 2324094598570.3237
[2025-11-24 21:01:40] 2025-11-24 20:00:57,384 | INFO     | mean x: 1763975991.5596185
[2025-11-24 21:01:40] 2025-11-24 20:00:57,384 | INFO     | mean y: 2794085.5890302067
[2025-11-24 21:01:40] 2025-11-24 20:00:57,385 | INFO     | intersect: -6638154856.131511
[2025-11-24 21:01:40] 2025-11-24 20:00:57,386 | INFO     | chi2: 35.424749876690015
[2025-11-24 21:01:40] 2025-11-24 20:00:57,388 | INFO     | sum of square deviations: 609997228704.8922
[2025-11-24 21:01:40] 2025-11-24 20:00:57,449 | INFO     | sum of deviations: 2756083372683.457
[2025-11-24 21:01:40] 2025-11-24 20:00:57,450 | INFO     | mean x: 1763975839.0638468
[2025-11-24 21:01:40] 2025-11-24 20:00:57,450 | INFO     | mean y: 2803069.1691939346
[2025-11-24 21:01:40] 2025-11-24 20:00:57,450 | INFO     | intersect: -7967174909.552445
[2025-11-24 21:01:40] 2025-11-24 20:00:57,452 | INFO     | chi2: 31.701009893113905
[2025-11-24 21:01:40] 2025-11-24 20:00:57,452 | INFO     | current chi2=31.701009893113905 (change=10.511690263270943 %)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,452 | INFO     | right removable region: 1252
[2025-11-24 21:01:40] 2025-11-24 20:00:57,454 | INFO     | sum of square deviations: 609996415574.8915
[2025-11-24 21:01:40] 2025-11-24 20:00:57,501 | INFO     | sum of deviations: 1795163618528.7354
[2025-11-24 21:01:40] 2025-11-24 20:00:57,501 | INFO     | mean x: 1763976144.0638468
[2025-11-24 21:01:40] 2025-11-24 20:00:57,501 | INFO     | mean y: 2805086.7909018355
[2025-11-24 21:01:40] 2025-11-24 20:00:57,501 | INFO     | intersect: -5188415249.793589
[2025-11-24 21:01:40] 2025-11-24 20:00:57,503 | INFO     | chi2: 30.513804171124264
[2025-11-24 21:01:40] 2025-11-24 20:00:57,503 | INFO     | current chi2=30.513804171124264 (change=13.86303565349158 %)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,503 | INFO     | left removable region: 10
[2025-11-24 21:01:40] 2025-11-24 20:00:57,505 | INFO     | sum of square deviations: 594071615963.8354
[2025-11-24 21:01:40] 2025-11-24 20:00:57,550 | INFO     | sum of deviations: 1836766563491.6987
[2025-11-24 21:01:40] 2025-11-24 20:00:57,551 | INFO     | mean x: 1763976113.573269
[2025-11-24 21:01:40] 2025-11-24 20:00:57,551 | INFO     | mean y: 2826153.1296296297
[2025-11-24 21:01:40] 2025-11-24 20:00:57,551 | INFO     | intersect: -5451082529.164078
[2025-11-24 21:01:40] 2025-11-24 20:00:57,553 | INFO     | chi2: 22.04623409845117
[2025-11-24 21:01:40] 2025-11-24 20:00:57,553 | INFO     | current memory leak: 3.09 B/s (using 1242 data points, chi2=22.05)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,554 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | ..............................
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . Timing measurements:
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . get job = 0 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . initial setup = 6 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . payload setup = 155 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . stage-in = 0 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,555 | INFO     | . payload execution = 76842 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,556 | INFO     | . stage-out = 5 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,556 | INFO     | . log creation = 2 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,556 | INFO     | ..............................
[2025-11-24 21:01:40] 2025-11-24 20:00:57,693 | INFO     | time since job start (77322s) is within the limit (172800.0s)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,907 | INFO     | 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,907 | INFO     | job summary report
[2025-11-24 21:01:40] 2025-11-24 20:00:57,907 | INFO     | --------------------------------------------------
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | PanDA job id: 6893852518
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | task id: 47523449
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | errors: (none)
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | pilot state: finished 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | transexitcode: 0
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | exeerrorcode: 0
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | exeerrordiag: 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,908 | INFO     | exitcode: 0
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | exitmsg: OK
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | cpuconsumptiontime: 344293 s
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | nevents: 1000
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | neventsw: 0
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | pid: 10855
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | pgrp: 10855
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | corecount: 8
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | event service: False
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 44: 2298919, 55: 2299075, 66: 2299103, 77: 2299131, 88: 2299187, 98: 2299215, 104: 2299785, 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,909 | INFO     | --------------------------------------------------
[2025-11-24 21:01:40] 2025-11-24 20:00:57,910 | INFO     | 
[2025-11-24 21:01:40] 2025-11-24 20:00:57,910 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-24 21:01:40] 2025-11-24 20:00:58,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 21:01:40] 2025-11-24 20:00:58,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 21:01:40] 2025-11-24 20:00:58,337 | INFO     | job 6893852518 has completed (purged errors)
[2025-11-24 21:01:40] 2025-11-24 20:00:58,337 | INFO     | overall cleanup function is called
[2025-11-24 21:01:40] 2025-11-24 20:00:59,355 | INFO     | --- collectZombieJob: --- 10, [10855]
[2025-11-24 21:01:40] 2025-11-24 20:00:59,355 | INFO     | zombie collector waiting for pid 10855
[2025-11-24 21:01:40] 2025-11-24 20:00:59,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 21:01:40] 2025-11-24 20:00:59,356 | INFO     | collected zombie processes
[2025-11-24 21:01:40] 2025-11-24 20:00:59,356 | INFO     | will attempt to kill all subprocesses of pid=10855
[2025-11-24 21:01:40] 2025-11-24 20:00:59,456 | INFO     | process IDs to be killed: [10855] (in reverse order)
[2025-11-24 21:01:40] 2025-11-24 20:01:00,364 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 21:01:40] 2025-11-24 20:01:00,364 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 21:01:40] 2025-11-24 20:01:00,366 | INFO     | did not find any defunct processes belonging to 10855
[2025-11-24 21:01:40] 2025-11-24 20:01:00,368 | INFO     | did not find any defunct processes belonging to 10855
[2025-11-24 21:01:40] 2025-11-24 20:01:00,425 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 21:01:40] 2025-11-24 20:01:00,426 | INFO     | ready for new job
[2025-11-24 21:01:40] 2025-11-24 20:01:00,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 21:01:40] 2025-11-24 20:01:00,431 | INFO     | ***************************************
[2025-11-24 21:01:40] 2025-11-24 20:01:00,431 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 21:01:40] 2025-11-24 20:01:00,431 | INFO     | ***************************************
[2025-11-24 21:01:40] 2025-11-24 20:01:00,431 | INFO     | 
[2025-11-24 21:01:40] 2025-11-24 20:01:00,432 | INFO     | pilot is running in a VM
[2025-11-24 21:01:40] 2025-11-24 20:01:00,432 | INFO     | architecture information:
[2025-11-24 21:01:40] 2025-11-24 20:01:00,461 | INFO     | executing command: cat /etc/os-release
[2025-11-24 21:01:40] 2025-11-24 20:01:00,692 | INFO     | cat /etc/os-release:
[2025-11-24 21:01:40] NAME="CentOS Linux"
[2025-11-24 21:01:40] VERSION="7 (Core)"
[2025-11-24 21:01:40] ID="centos"
[2025-11-24 21:01:40] ID_LIKE="rhel fedora"
[2025-11-24 21:01:40] VERSION_ID="7"
[2025-11-24 21:01:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 21:01:40] ANSI_COLOR="0;31"
[2025-11-24 21:01:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 21:01:40] HOME_URL="https://www.centos.org/"
[2025-11-24 21:01:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 21:01:40] 
[2025-11-24 21:01:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 21:01:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 21:01:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 21:01:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 21:01:40] 
[2025-11-24 21:01:40] 2025-11-24 20:01:00,693 | INFO     | ***************************************
[2025-11-24 21:01:40] 2025-11-24 20:01:01,196 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-24 21:01:40] 2025-11-24 20:01:01,452 | INFO     | sufficient remaining disk space (493676920832 B)
[2025-11-24 21:01:40] 2025-11-24 20:01:01,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 21:01:40] 2025-11-24 20:01:01,452 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 21:01:40] 2025-11-24 20:01:01,452 | INFO     | update_server=False
[2025-11-24 21:01:40] 2025-11-24 20:01:01,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 21:01:40] 2025-11-24 20:01:01,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 21:01:40] 2025-11-24 20:01:01,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:01:40] 2025-11-24 20:01:01,459 | INFO     | aborting loop
[2025-11-24 21:01:40] 2025-11-24 20:01:01,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 21:01:40] 2025-11-24 20:01:02,165 | INFO     | all payload control threads have been joined
[2025-11-24 21:01:40] 2025-11-24 20:01:02,239 | INFO     | all job control threads have been joined
[2025-11-24 21:01:40] 2025-11-24 20:01:02,440 | INFO     | all data control threads have been joined
[2025-11-24 21:01:40] 2025-11-24 20:01:02,458 | INFO     | [job] retrieve thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,465 | INFO     | [job] job monitor thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,548 | INFO     | [payload] failed_post thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,586 | INFO     | [job] validate thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 21:01:40] 2025-11-24 20:01:02,740 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,883 | INFO     | [data] copytool_in thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:02,973 | INFO     | [payload] validate_post thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,171 | INFO     | [payload] control thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,245 | INFO     | [job] control thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,404 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,446 | INFO     | [data] control thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,705 | INFO     | [data] copytool_out thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,738 | INFO     | [job] queue monitor thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,780 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:03,861 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:05,462 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 21:01:40] 2025-11-24 20:01:28,973 | INFO     | [monitor] cgroup control has ended
[2025-11-24 21:01:40] 2025-11-24 20:01:30,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827703076672)>', '<ExcThread(monitor, started 139827257259776)>']
[2025-11-24 21:01:40] 2025-11-24 20:01:30,911 | INFO     | PID=4309 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | INFO     | .. there are 2 such processes running
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 21:01:40] 2025-11-24 20:01:30,912 | INFO     | [monitor] control thread has ended
[2025-11-24 21:01:40] 2025-11-24 20:01:35,877 | INFO     | all workflow threads have been joined
[2025-11-24 21:01:40] 2025-11-24 20:01:35,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 21:01:40] 2025-11-24 20:01:35,878 | INFO     | traces error code: 0
[2025-11-24 21:01:40] 2025-11-24 20:01:35,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 21:01:40] 2025-11-24 20:01:36,246 [wrapper] ==== pilot stdout END ====
[2025-11-24 21:01:40] 2025-11-24 20:01:36,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 21:01:40] 2025-11-24 20:01:36,458 [wrapper] pilotpid: 4309
[2025-11-24 21:01:40] 2025-11-24 20:01:36,551 [wrapper] Pilot exit status: 0
[2025-11-24 21:01:40] 2025-11-24 20:01:36,885 [wrapper] pandaids: 6893852518
[2025-11-24 21:01:40] 2025-11-24 20:01:37,621 [wrapper] cleanup supervisor_pilot 17018 4310
[2025-11-24 21:01:40] 2025-11-24 20:01:37,710 [wrapper] Test setup, not cleaning
[2025-11-24 21:01:40] 2025-11-24 20:01:37,761 [wrapper] apfmon messages muted
[2025-11-24 21:01:40] 2025-11-24 20:01:37,844 [wrapper] ==== wrapper stdout END ====
[2025-11-24 21:01:40] 2025-11-24 20:01:37,920 [wrapper] ==== wrapper stderr END ====
[2025-11-24 21:01:40]  *** Error codes and diagnostics ***
[2025-11-24 21:01:40]     "exeErrorCode": 0,
[2025-11-24 21:01:40]     "exeErrorDiag": "",
[2025-11-24 21:01:40]     "pilotErrorCode": 0,
[2025-11-24 21:01:40]     "pilotErrorDiag": "",
[2025-11-24 21:01:40]  *** Listing of results directory ***
[2025-11-24 21:01:40] total 1317000
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:58 queuedata.json
[2025-11-24 21:01:40] -rwx------. 1 boinc boinc     36292 Nov 20 12:58 runpilot2-wrapper.sh
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc       100 Nov 23 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 21:01:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 23:28 run_atlas
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc       105 Nov 23 23:28 job.xml
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc      6393 Nov 23 23:28 init_data.xml
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc 407349938 Nov 23 23:28 EVNT.47493127._000388.pool.root.1
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc     15847 Nov 23 23:28 start_atlas.sh
[2025-11-24 21:01:40] drwxrwx--x. 2 boinc boinc        68 Nov 23 23:28 shared
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc    590100 Nov 23 23:28 input.tar.gz
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc         0 Nov 23 23:28 boinc_lockfile
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc      2785 Nov 23 23:28 pandaJob.out
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc    989786 Nov 23 23:32 agis_schedconf.cvmfs.json
[2025-11-24 21:01:40] drwx------. 5 boinc boinc      4096 Nov 23 23:32 pilot3
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc       533 Nov 24 20:24 boinc_task_state.xml
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc 911956385 Nov 24 20:57 HITS.47523449._003877.pool.root.1
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc      1032 Nov 24 20:58 memory_monitor_summary.json
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc   1516227 Nov 24 20:59 agis_ddmendpoints.agis.ALL.json
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc   2391527 Nov 24 20:59 log.47523449._003877.job.log.tgz.1
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc        95 Nov 24 21:00 pilot_heartbeat.json
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc      8636 Nov 24 21:00 heartbeat.json
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc      8192 Nov 24 21:01 boinc_mmap_file
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc        29 Nov 24 21:01 wrapper_checkpoint.txt
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc      4884 Nov 24 21:01 pilotlog.txt
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc  10310204 Nov 24 21:01 log.47523449._003877.job.log.1
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc       353 Nov 24 21:01 output.list
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc       620 Nov 24 21:01 runtime_log
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc  12718080 Nov 24 21:01 result.tar.gz
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc      8833 Nov 24 21:01 runtime_log.err
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc       662 Nov 24 21:01 rC4LDmqTIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2gHKDmvss3Qn.diag
[2025-11-24 21:01:40] -rw-r--r--. 1 boinc boinc     21507 Nov 24 21:01 stderr.txt
[2025-11-24 21:01:40] HITS file was successfully produced:
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc 911956385 Nov 24 20:57 shared/HITS.pool.root.1
[2025-11-24 21:01:40]  *** Contents of shared directory: ***
[2025-11-24 21:01:40] total 1301404
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc 407349938 Nov 23 23:28 ATLAS.root_0
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc     15847 Nov 23 23:28 start_atlas.sh
[2025-11-24 21:01:40] -rw-r--r--. 2 boinc boinc    590100 Nov 23 23:28 input.tar.gz
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc 911956385 Nov 24 20:57 HITS.pool.root.1
[2025-11-24 21:01:40] -rw-------. 1 boinc boinc  12718080 Nov 24 21:01 result.tar.gz
21:01:41 (452): run_atlas exited; CPU time 344557.128979
21:01:41 (452): called boinc_finish(0)

</stderr_txt>
]]>

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