Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:53:37 (3668209): wrapper (7.7.26015): starting
19:53:37 (3668209): wrapper: running run_atlas (--nthreads 4)
[2025-11-25 19:53:37] Arguments: --nthreads 4
[2025-11-25 19:53:37] Threads: 4
[2025-11-25 19:53:37] Checking for CVMFS
[2025-11-25 19:53:37] No cvmfs_config command found, will try listing directly
[2025-11-25 19:53:37] CVMFS is ok
[2025-11-25 19:53:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:53:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:53:37] Further information can be found at the LHC@home message board.
[2025-11-25 19:53:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:53:37] Checking for apptainer binary...
[2025-11-25 19:53:37] which: no apptainer in ((null))
[2025-11-25 19:53:37] apptainer is not installed, using version from CVMFS
[2025-11-25 19:53:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:53:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-25 19:53:37] apptainer works
[2025-11-25 19:53:37] Set ATHENA_PROC_NUMBER=4
[2025-11-25 19:53:37] Set ATHENA_CORE_NUMBER=4
[2025-11-25 19:53:37] Starting ATLAS job with PandaID=6893855666
[2025-11-25 19:53:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:10:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:10:42] 2025-11-26 12:09:47,266 | INFO     | monitor loop #4475: job 0:6893855666 is in state 'finished'
[2025-11-26 13:10:42] 2025-11-26 12:09:47,266 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:10:42] 2025-11-26 12:09:48,793 | INFO     | time since job start (62157s) is within the limit (172800.0s)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,219 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 13:10:42] 2025-11-26 12:09:49,228 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2745.978359375
[2025-11-26 13:10:42] 2025-11-26 12:09:49,240 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6893855666/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,241 | INFO     | extracted standard info from prmon json
[2025-11-26 13:10:42] 2025-11-26 12:09:49,241 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:10:42] 2025-11-26 12:09:49,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:10:42] 2025-11-26 12:09:49,257 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:10:42] 2025-11-26 12:09:49,259 | INFO     | sum of square deviations: 328095714470.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,279 | INFO     | sum of deviations: 824152960652.9999
[2025-11-26 13:10:42] 2025-11-26 12:09:49,279 | INFO     | mean x: 1764127908.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,279 | INFO     | mean y: 2290611.0264965654
[2025-11-26 13:10:42] 2025-11-26 12:09:49,279 | INFO     | intersect: -4429072476.715765
[2025-11-26 13:10:42] 2025-11-26 12:09:49,280 | INFO     | chi2: 4.177277985528974
[2025-11-26 13:10:42] 2025-11-26 12:09:49,282 | INFO     | sum of square deviations: 323289698777.5
[2025-11-26 13:10:42] 2025-11-26 12:09:49,304 | INFO     | sum of deviations: 1048334904832.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,304 | INFO     | mean x: 1764127755.5
[2025-11-26 13:10:42] 2025-11-26 12:09:49,304 | INFO     | mean y: 2297719.009861933
[2025-11-26 13:10:42] 2025-11-26 12:09:49,304 | INFO     | intersect: -5718257899.269846
[2025-11-26 13:10:42] 2025-11-26 12:09:49,305 | INFO     | chi2: 1.8575881595321773
[2025-11-26 13:10:42] 2025-11-26 12:09:49,305 | INFO     | current chi2=1.8575881595321773 (change=55.53113376779619 %)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,307 | INFO     | sum of square deviations: 318530846760.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,326 | INFO     | sum of deviations: 1077009524545.0001
[2025-11-26 13:10:42] 2025-11-26 12:09:49,327 | INFO     | mean x: 1764127603.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,327 | INFO     | mean y: 2298634.7026759167
[2025-11-26 13:10:42] 2025-11-26 12:09:49,327 | INFO     | intersect: -5962530989.397435
[2025-11-26 13:10:42] 2025-11-26 12:09:49,328 | INFO     | chi2: 1.736155738010305
[2025-11-26 13:10:42] 2025-11-26 12:09:49,328 | INFO     | current chi2=1.736155738010305 (change=6.53710139670864 %)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,328 | INFO     | right removable region: 1008
[2025-11-26 13:10:42] 2025-11-26 12:09:49,330 | INFO     | sum of square deviations: 323289698777.5
[2025-11-26 13:10:42] 2025-11-26 12:09:49,351 | INFO     | sum of deviations: 650567686622.9999
[2025-11-26 13:10:42] 2025-11-26 12:09:49,351 | INFO     | mean x: 1764128060.5
[2025-11-26 13:10:42] 2025-11-26 12:09:49,351 | INFO     | mean y: 2296109.3885601577
[2025-11-26 13:10:42] 2025-11-26 12:09:49,351 | INFO     | intersect: -3547723317.6643376
[2025-11-26 13:10:42] 2025-11-26 12:09:49,352 | INFO     | chi2: 2.5460334791464763
[2025-11-26 13:10:42] 2025-11-26 12:09:49,353 | INFO     | current chi2=2.5460334791464763 (change=39.05041780876192 %)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,354 | INFO     | sum of square deviations: 318530846760.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,374 | INFO     | sum of deviations: 636868500115.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,374 | INFO     | mean x: 1764128213.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,374 | INFO     | mean y: 2296547.853320119
[2025-11-26 13:10:42] 2025-11-26 12:09:49,374 | INFO     | intersect: -3524889909.7596536
[2025-11-26 13:10:42] 2025-11-26 12:09:49,376 | INFO     | chi2: 2.544384096071245
[2025-11-26 13:10:42] 2025-11-26 12:09:49,376 | INFO     | current chi2=2.544384096071245 (change=0.06478245823319012 %)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,376 | INFO     | left removable region: 20
[2025-11-26 13:10:42] 2025-11-26 12:09:49,377 | INFO     | sum of square deviations: 299053447147.0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,396 | INFO     | sum of deviations: 861950903327.4999
[2025-11-26 13:10:42] 2025-11-26 12:09:49,396 | INFO     | mean x: 1764128182.5
[2025-11-26 13:10:42] 2025-11-26 12:09:49,396 | INFO     | mean y: 2305425.8613360324
[2025-11-26 13:10:42] 2025-11-26 12:09:49,396 | INFO     | intersect: -5082377245.4068775
[2025-11-26 13:10:42] 2025-11-26 12:09:49,397 | INFO     | chi2: 0.0772082899881536
[2025-11-26 13:10:42] 2025-11-26 12:09:49,398 | INFO     | current memory leak: 2.88 B/s (using 988 data points, chi2=0.08)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | could have reported an average CPU frequency of 2699 MHz (38 samples)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | ..............................
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . Timing measurements:
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . get job = 0 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . initial setup = 1 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . payload setup = 6 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . stage-in = 0 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . payload execution = 62117 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . stage-out = 2 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,399 | INFO     | . log creation = 0 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,400 | INFO     | ..............................
[2025-11-26 13:10:42] 2025-11-26 12:09:49,489 | INFO     | 
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | job summary report
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | --------------------------------------------------
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | PanDA job id: 6893855666
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | task id: 47523449
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | errors: (none)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | pilot state: finished 
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | transexitcode: 0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | exeerrorcode: 0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | exeerrordiag: 
[2025-11-26 13:10:42] 2025-11-26 12:09:49,490 | INFO     | exitcode: 0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | exitmsg: OK
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | cpuconsumptiontime: 246500 s
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | nevents: 1000
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | neventsw: 0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | pid: 3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | pgrp: 3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | corecount: 4
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | event service: False
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | sizes: {0: 2284275, 5: 2284537, 11: 2284593, 62126: 2337495, 62127: 2337494, 62130: 2346566, 62133: 2346750, 62142: 2346996}
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | --------------------------------------------------
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | 
[2025-11-26 13:10:42] 2025-11-26 12:09:49,491 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,514 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:10:42] 2025-11-26 12:09:49,515 | INFO     | job 6893855666 has completed (purged errors)
[2025-11-26 13:10:42] 2025-11-26 12:09:49,515 | INFO     | overall cleanup function is called
[2025-11-26 13:10:42] 2025-11-26 12:09:50,528 | INFO     | --- collectZombieJob: --- 10, [3680038]
[2025-11-26 13:10:42] 2025-11-26 12:09:50,528 | INFO     | zombie collector waiting for pid 3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:50,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:10:42] 2025-11-26 12:09:50,528 | INFO     | collected zombie processes
[2025-11-26 13:10:42] 2025-11-26 12:09:50,529 | INFO     | will attempt to kill all subprocesses of pid=3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:50,959 | INFO     | process IDs to be killed: [3680038] (in reverse order)
[2025-11-26 13:10:42] 2025-11-26 12:09:51,070 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:10:42] 2025-11-26 12:09:51,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:10:42] 2025-11-26 12:09:51,086 | INFO     | did not find any defunct processes belonging to 3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:51,098 | INFO     | did not find any defunct processes belonging to 3680038
[2025-11-26 13:10:42] 2025-11-26 12:09:51,100 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:10:42] 2025-11-26 12:09:51,100 | INFO     | ready for new job
[2025-11-26 13:10:42] 2025-11-26 12:09:51,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:10:42] 2025-11-26 12:09:51,107 | INFO     | ***************************************
[2025-11-26 13:10:42] 2025-11-26 12:09:51,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:10:42] 2025-11-26 12:09:51,107 | INFO     | ***************************************
[2025-11-26 13:10:42] 2025-11-26 12:09:51,107 | INFO     | 
[2025-11-26 13:10:42] 2025-11-26 12:09:51,111 | INFO     | architecture information:
[2025-11-26 13:10:42] 2025-11-26 12:09:51,112 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:10:42] 2025-11-26 12:09:51,128 | INFO     | cat /etc/os-release:
[2025-11-26 13:10:42] NAME="CentOS Linux"
[2025-11-26 13:10:42] VERSION="7 (Core)"
[2025-11-26 13:10:42] ID="centos"
[2025-11-26 13:10:42] ID_LIKE="rhel fedora"
[2025-11-26 13:10:42] VERSION_ID="7"
[2025-11-26 13:10:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:10:42] ANSI_COLOR="0;31"
[2025-11-26 13:10:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:10:42] HOME_URL="https://www.centos.org/"
[2025-11-26 13:10:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:10:42] 
[2025-11-26 13:10:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:10:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:10:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:10:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:10:42] 
[2025-11-26 13:10:42] 2025-11-26 12:09:51,129 | INFO     | ***************************************
[2025-11-26 13:10:42] 2025-11-26 12:09:51,632 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-26 13:10:42] 2025-11-26 12:09:51,648 | INFO     | sufficient remaining disk space (657964662784 B)
[2025-11-26 13:10:42] 2025-11-26 12:09:51,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:10:42] 2025-11-26 12:09:51,648 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:10:42] 2025-11-26 12:09:51,648 | INFO     | update_server=False
[2025-11-26 13:10:42] 2025-11-26 12:09:51,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:10:42] 2025-11-26 12:09:51,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:10:42] 2025-11-26 12:09:51,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:10:42] 2025-11-26 12:09:51,649 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:10:42] 2025-11-26 12:09:51,650 | INFO     | aborting loop
[2025-11-26 13:10:42] 2025-11-26 12:09:51,737 | INFO     | all data control threads have been joined
[2025-11-26 13:10:42] 2025-11-26 12:09:51,905 | INFO     | all job control threads have been joined
[2025-11-26 13:10:42] 2025-11-26 12:09:52,651 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:52,652 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:52,742 | INFO     | [data] control thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:52,772 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:52,912 | INFO     | [job] control thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:52,922 | INFO     | all payload control threads have been joined
[2025-11-26 13:10:42] 2025-11-26 12:09:53,036 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,326 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,327 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,374 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,655 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,693 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,792 | INFO     | [job] validate thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:53,927 | INFO     | [payload] control thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:54,046 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:54,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:10:42] 2025-11-26 12:09:55,505 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:09:55,656 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:10:42] 2025-11-26 12:10:22,390 | INFO     | PID=3672516 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:10:42] 2025-11-26 12:10:22,390 | INFO     | .. there are 3 such processes running
[2025-11-26 13:10:42] 2025-11-26 12:10:22,391 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:10:42] 2025-11-26 12:10:22,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:10:42] 2025-11-26 12:10:22,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:10:42] 2025-11-26 12:10:31,058 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:10:42] 2025-11-26 12:10:31,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22524385417024)>', '<ExcThread(monitor, started 22523808827136)>']
[2025-11-26 13:10:42] 2025-11-26 12:10:32,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:10:42] 2025-11-26 12:10:32,437 | INFO     | [monitor] control thread has ended
[2025-11-26 13:10:42] 2025-11-26 12:10:36,887 | INFO     | all workflow threads have been joined
[2025-11-26 13:10:42] 2025-11-26 12:10:36,887 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:10:42] 2025-11-26 12:10:36,887 | INFO     | traces error code: 0
[2025-11-26 13:10:42] 2025-11-26 12:10:36,888 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:10:42] 2025-11-26 12:10:37,044 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:10:42] 2025-11-26 12:10:37,047 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:10:42] 2025-11-26 12:10:37,050 [wrapper] pilotpid: 3672516
[2025-11-26 13:10:42] 2025-11-26 12:10:37,053 [wrapper] Pilot exit status: 0
[2025-11-26 13:10:42] 2025-11-26 12:10:37,064 [wrapper] pandaids: 6893855666
[2025-11-26 13:10:42] 2025-11-26 12:10:37,141 [wrapper] cleanup supervisor_pilot  195772 3672517
[2025-11-26 13:10:42] 2025-11-26 12:10:37,143 [wrapper] Test setup, not cleaning
[2025-11-26 13:10:42] 2025-11-26 12:10:37,146 [wrapper] apfmon messages muted
[2025-11-26 13:10:42] 2025-11-26 12:10:37,148 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:10:42] 2025-11-26 12:10:37,151 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:10:42]  *** Error codes and diagnostics ***
[2025-11-26 13:10:42]     "exeErrorCode": 0,
[2025-11-26 13:10:42]     "exeErrorDiag": "",
[2025-11-26 13:10:42]     "pilotErrorCode": 0,
[2025-11-26 13:10:42]     "pilotErrorDiag": "",
[2025-11-26 13:10:42]  *** Listing of results directory ***
[2025-11-26 13:10:42] total 1337484
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-26 13:10:42] -rwx------ 1 boinc boinc     36292 Nov 20 13:40 runpilot2-wrapper.sh
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:40 queuedata.json
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc       100 Nov 25 19:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:10:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 19:53 run_atlas
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc       105 Nov 25 19:53 job.xml
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc 412396500 Nov 25 19:53 EVNT.47493127._000451.pool.root.1
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc      6636 Nov 25 19:53 init_data.xml
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:53 start_atlas.sh
[2025-11-26 13:10:42] drwxrwx--x 2 boinc boinc      4096 Nov 25 19:53 shared
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc    590096 Nov 25 19:53 input.tar.gz
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 19:53 boinc_lockfile
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc      2785 Nov 25 19:53 pandaJob.out
[2025-11-26 13:10:42] -rw------- 1 boinc boinc    991543 Nov 25 19:53 agis_schedconf.cvmfs.json
[2025-11-26 13:10:42] drwx------ 5 boinc boinc      4096 Nov 25 19:53 pilot3
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc       531 Nov 26 13:01 boinc_task_state.xml
[2025-11-26 13:10:42] -rw------- 1 boinc boinc 932355313 Nov 26 13:08 HITS.47523449._004507.pool.root.1
[2025-11-26 13:10:42] -rw------- 1 boinc boinc      1045 Nov 26 13:09 memory_monitor_summary.json
[2025-11-26 13:10:42] -rw------- 1 boinc boinc   1516240 Nov 26 13:09 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:10:42] -rw------- 1 boinc boinc   1748667 Nov 26 13:09 log.47523449._004507.job.log.tgz.1
[2025-11-26 13:10:42] -rw------- 1 boinc boinc      8627 Nov 26 13:09 heartbeat.json
[2025-11-26 13:10:42] -rw------- 1 boinc boinc        95 Nov 26 13:10 pilot_heartbeat.json
[2025-11-26 13:10:42] -rw------- 1 boinc boinc      4833 Nov 26 13:10 pilotlog.txt
[2025-11-26 13:10:42] -rw------- 1 boinc boinc   8711653 Nov 26 13:10 log.47523449._004507.job.log.1
[2025-11-26 13:10:42] -rw------- 1 boinc boinc       353 Nov 26 13:10 output.list
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc       620 Nov 26 13:10 runtime_log
[2025-11-26 13:10:42] -rw------- 1 boinc boinc  10475520 Nov 26 13:10 result.tar.gz
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc      9206 Nov 26 13:10 runtime_log.err
[2025-11-26 13:10:42] -rw------- 1 boinc boinc       670 Nov 26 13:10 K40LDmY8Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOpHKDmkJvEwm.diag
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc        28 Nov 26 13:10 wrapper_checkpoint.txt
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc      8192 Nov 26 13:10 boinc_mmap_file
[2025-11-26 13:10:42] -rw-r--r-- 1 boinc boinc     21063 Nov 26 13:10 stderr.txt
[2025-11-26 13:10:42] HITS file was successfully produced:
[2025-11-26 13:10:42] -rw------- 1 boinc boinc 932355313 Nov 26 13:08 shared/HITS.pool.root.1
[2025-11-26 13:10:42]  *** Contents of shared directory: ***
[2025-11-26 13:10:42] total 1324072
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc 412396500 Nov 25 19:53 ATLAS.root_0
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 19:53 start_atlas.sh
[2025-11-26 13:10:42] -rw-r--r-- 2 boinc boinc    590096 Nov 25 19:53 input.tar.gz
[2025-11-26 13:10:42] -rw------- 1 boinc boinc 932355313 Nov 26 13:08 HITS.pool.root.1
[2025-11-26 13:10:42] -rw------- 1 boinc boinc  10475520 Nov 26 13:10 result.tar.gz
13:10:44 (3668209): run_atlas exited; CPU time 248885.460862
13:10:44 (3668209): called boinc_finish(0)

</stderr_txt>
]]>

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