Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:42:21 (1128102): wrapper (7.7.26015): starting
16:42:21 (1128102): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 16:42:21] Arguments: --nthreads 4
[2025-11-23 16:42:21] Threads: 4
[2025-11-23 16:42:21] Checking for CVMFS
[2025-11-23 16:42:21] No cvmfs_config command found, will try listing directly
[2025-11-23 16:42:21] CVMFS is ok
[2025-11-23 16:42:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 16:42:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 16:42:21] Further information can be found at the LHC@home message board.
[2025-11-23 16:42:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:42:21] Checking for apptainer binary...
[2025-11-23 16:42:21] which: no apptainer in ((null))
[2025-11-23 16:42:21] apptainer is not installed, using version from CVMFS
[2025-11-23 16:42:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:42:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-23 16:42:21] apptainer works
[2025-11-23 16:42:21] Set ATHENA_PROC_NUMBER=4
[2025-11-23 16:42:21] Set ATHENA_CORE_NUMBER=4
[2025-11-23 16:42:21] Starting ATLAS job with PandaID=6893855662
[2025-11-23 16:42:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 09:19:34]  *** The last 200 lines of the pilot log: ***
[2025-11-24 09:19:34] 2025-11-24 08:14:31,301 | INFO     | 59521s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 09:19:34] 2025-11-24 08:14:32,399 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 09:19:34] 2025-11-24 08:14:32,409 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2579.55765625
[2025-11-24 09:19:34] 2025-11-24 08:14:32,421 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6893855662/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,422 | INFO     | extracted standard info from prmon json
[2025-11-24 09:19:34] 2025-11-24 08:14:32,422 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 09:19:34] 2025-11-24 08:14:32,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 09:19:34] 2025-11-24 08:14:32,441 | INFO     | fitting pss+swap vs Time
[2025-11-24 09:19:34] 2025-11-24 08:14:32,442 | INFO     | sum of square deviations: 288288568100.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,463 | INFO     | sum of deviations: 737276482096.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,463 | INFO     | mean x: 1763942315.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,463 | INFO     | mean y: 2286537.480532787
[2025-11-24 09:19:34] 2025-11-24 08:14:32,463 | INFO     | intersect: -4508864194.455113
[2025-11-24 09:19:34] 2025-11-24 08:14:32,465 | INFO     | chi2: 4.10752115644803
[2025-11-24 09:19:34] 2025-11-24 08:14:32,466 | INFO     | sum of square deviations: 283880559870.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,486 | INFO     | sum of deviations: 961156001238.0002
[2025-11-24 09:19:34] 2025-11-24 08:14:32,487 | INFO     | mean x: 1763942163.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,487 | INFO     | mean y: 2294279.1184346033
[2025-11-24 09:19:34] 2025-11-24 08:14:32,487 | INFO     | intersect: -5970018853.491242
[2025-11-24 09:19:34] 2025-11-24 08:14:32,488 | INFO     | chi2: 1.7433301612907695
[2025-11-24 09:19:34] 2025-11-24 08:14:32,489 | INFO     | current chi2=1.7433301612907695 (change=57.55760968987168 %)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,490 | INFO     | sum of square deviations: 279517715277.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,510 | INFO     | sum of deviations: 953018970684.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,510 | INFO     | mean x: 1763942010.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,510 | INFO     | mean y: 2293993.8457556935
[2025-11-24 09:19:34] 2025-11-24 08:14:32,510 | INFO     | intersect: -6011887245.167744
[2025-11-24 09:19:34] 2025-11-24 08:14:32,512 | INFO     | chi2: 1.7367216507364087
[2025-11-24 09:19:34] 2025-11-24 08:14:32,512 | INFO     | current chi2=1.7367216507364087 (change=0.37907395289184725 %)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,512 | INFO     | right removable region: 965
[2025-11-24 09:19:34] 2025-11-24 08:14:32,513 | INFO     | sum of square deviations: 283880559870.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,534 | INFO     | sum of deviations: 570182857133.0001
[2025-11-24 09:19:34] 2025-11-24 08:14:32,534 | INFO     | mean x: 1763942468.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,534 | INFO     | mean y: 2292307.7662203913
[2025-11-24 09:19:34] 2025-11-24 08:14:32,534 | INFO     | intersect: -3540640525.2641807
[2025-11-24 09:19:34] 2025-11-24 08:14:32,536 | INFO     | chi2: 2.461838814246776
[2025-11-24 09:19:34] 2025-11-24 08:14:32,536 | INFO     | current chi2=2.461838814246776 (change=40.06509716006805 %)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,537 | INFO     | sum of square deviations: 279517715277.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,557 | INFO     | sum of deviations: 555639016709.4999
[2025-11-24 09:19:34] 2025-11-24 08:14:32,557 | INFO     | mean x: 1763942620.5
[2025-11-24 09:19:34] 2025-11-24 08:14:32,558 | INFO     | mean y: 2292815.4855072466
[2025-11-24 09:19:34] 2025-11-24 08:14:32,558 | INFO     | intersect: -3504158796.0467286
[2025-11-24 09:19:34] 2025-11-24 08:14:32,559 | INFO     | chi2: 2.459117798004317
[2025-11-24 09:19:34] 2025-11-24 08:14:32,559 | INFO     | current chi2=2.459117798004317 (change=0.11052779843718771 %)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,559 | INFO     | left removable region: 20
[2025-11-24 09:19:34] 2025-11-24 08:14:32,561 | INFO     | sum of square deviations: 261681706440.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,580 | INFO     | sum of deviations: 764905389027.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,580 | INFO     | mean x: 1763942590.0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,580 | INFO     | mean y: 2300447.9354497353
[2025-11-24 09:19:34] 2025-11-24 08:14:32,580 | INFO     | intersect: -5153769540.222505
[2025-11-24 09:19:34] 2025-11-24 08:14:32,582 | INFO     | chi2: 0.06554929444022053
[2025-11-24 09:19:34] 2025-11-24 08:14:32,582 | INFO     | current memory leak: 2.92 B/s (using 945 data points, chi2=0.07)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,583 | INFO     | could have reported an average CPU frequency of 2711 MHz (36 samples)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | ..............................
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . Timing measurements:
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . get job = 0 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . initial setup = 1 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . payload setup = 6 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . stage-in = 0 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . payload execution = 59483 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . stage-out = 2 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | . log creation = 0 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,584 | INFO     | ..............................
[2025-11-24 09:19:34] 2025-11-24 08:14:32,687 | INFO     | 
[2025-11-24 09:19:34] 2025-11-24 08:14:32,687 | INFO     | job summary report
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | --------------------------------------------------
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | PanDA job id: 6893855662
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | task id: 47523449
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | errors: (none)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | pilot state: finished 
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | transexitcode: 0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | exeerrorcode: 0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | exeerrordiag: 
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | exitcode: 0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | exitmsg: OK
[2025-11-24 09:19:34] 2025-11-24 08:14:32,688 | INFO     | cpuconsumptiontime: 236137 s
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | nevents: 1000
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | neventsw: 0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | pid: 1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | pgrp: 1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | corecount: 4
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | event service: False
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | sizes: {0: 2298596, 1: 2298795, 5: 2299057, 11: 2299113, 59493: 2351155, 59494: 2351154, 59498: 2360354, 59499: 2360410, 59506: 2360656}
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | --------------------------------------------------
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | 
[2025-11-24 09:19:34] 2025-11-24 08:14:32,689 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-24 09:19:34] 2025-11-24 08:14:32,710 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 09:19:34] 2025-11-24 08:14:32,713 | INFO     | job 6893855662 has completed (purged errors)
[2025-11-24 09:19:34] 2025-11-24 08:14:32,713 | INFO     | overall cleanup function is called
[2025-11-24 09:19:34] 2025-11-24 08:14:33,726 | INFO     | --- collectZombieJob: --- 10, [1138826]
[2025-11-24 09:19:34] 2025-11-24 08:14:33,726 | INFO     | zombie collector waiting for pid 1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:33,726 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 09:19:34] 2025-11-24 08:14:33,726 | INFO     | collected zombie processes
[2025-11-24 09:19:34] 2025-11-24 08:14:33,727 | INFO     | will attempt to kill all subprocesses of pid=1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:34,183 | INFO     | process IDs to be killed: [1138826] (in reverse order)
[2025-11-24 09:19:34] 2025-11-24 08:14:34,309 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 09:19:34] 2025-11-24 08:14:34,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 09:19:34] 2025-11-24 08:14:34,323 | INFO     | did not find any defunct processes belonging to 1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:34,337 | INFO     | did not find any defunct processes belonging to 1138826
[2025-11-24 09:19:34] 2025-11-24 08:14:34,339 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 09:19:34] 2025-11-24 08:14:34,339 | INFO     | ready for new job
[2025-11-24 09:19:34] 2025-11-24 08:14:34,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 09:19:34] 2025-11-24 08:14:34,345 | INFO     | ***************************************
[2025-11-24 09:19:34] 2025-11-24 08:14:34,346 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 09:19:34] 2025-11-24 08:14:34,346 | INFO     | ***************************************
[2025-11-24 09:19:34] 2025-11-24 08:14:34,346 | INFO     | 
[2025-11-24 09:19:34] 2025-11-24 08:14:34,350 | INFO     | architecture information:
[2025-11-24 09:19:34] 2025-11-24 08:14:34,351 | INFO     | executing command: cat /etc/os-release
[2025-11-24 09:19:34] 2025-11-24 08:14:34,367 | INFO     | cat /etc/os-release:
[2025-11-24 09:19:34] NAME="CentOS Linux"
[2025-11-24 09:19:34] VERSION="7 (Core)"
[2025-11-24 09:19:34] ID="centos"
[2025-11-24 09:19:34] ID_LIKE="rhel fedora"
[2025-11-24 09:19:34] VERSION_ID="7"
[2025-11-24 09:19:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 09:19:34] ANSI_COLOR="0;31"
[2025-11-24 09:19:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 09:19:34] HOME_URL="https://www.centos.org/"
[2025-11-24 09:19:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 09:19:34] 
[2025-11-24 09:19:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 09:19:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 09:19:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 09:19:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 09:19:34] 
[2025-11-24 09:19:34] 2025-11-24 08:14:34,367 | INFO     | ***************************************
[2025-11-24 09:19:34] 2025-11-24 08:14:34,870 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-24 09:19:34] 2025-11-24 08:14:34,887 | INFO     | sufficient remaining disk space (670165893120 B)
[2025-11-24 09:19:34] 2025-11-24 08:14:34,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 09:19:34] 2025-11-24 08:14:34,888 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 09:19:34] 2025-11-24 08:14:34,888 | INFO     | update_server=False
[2025-11-24 09:19:34] 2025-11-24 08:14:34,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 09:19:34] 2025-11-24 08:14:34,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 09:19:34] 2025-11-24 08:14:35,034 | INFO     | all job control threads have been joined
[2025-11-24 09:19:34] 2025-11-24 08:14:35,238 | INFO     | all data control threads have been joined
[2025-11-24 09:19:34] 2025-11-24 08:14:35,292 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 09:19:34] 2025-11-24 08:14:35,292 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 09:19:34] 2025-11-24 08:14:35,292 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:19:34] 2025-11-24 08:14:35,292 | INFO     | will abort loop
[2025-11-24 09:19:34] 2025-11-24 08:14:35,893 | INFO     | [job] retrieve thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:35,981 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,039 | INFO     | [job] control thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,045 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 09:19:34] 2025-11-24 08:14:36,147 | INFO     | all payload control threads have been joined
[2025-11-24 09:19:34] 2025-11-24 08:14:36,243 | INFO     | [data] control thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,276 | INFO     | [payload] failed_post thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,297 | INFO     | [job] job monitor thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,307 | INFO     | [job] validate thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,461 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,490 | INFO     | [payload] validate_post thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,994 | INFO     | [data] copytool_out thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:36,996 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:37,152 | INFO     | [payload] control thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:37,290 | INFO     | [data] copytool_in thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:37,698 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:19:34] 2025-11-24 08:14:38,703 | INFO     | [job] queue monitor thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:14:40,051 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 09:19:34] 2025-11-24 08:15:04,884 | INFO     | PID=1131901 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 09:19:34] 2025-11-24 08:15:04,885 | INFO     | .. there are 5 such processes running
[2025-11-24 09:19:34] 2025-11-24 08:15:04,885 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 09:19:34] 2025-11-24 08:15:04,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 09:19:34] 2025-11-24 08:15:04,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 09:19:34] 2025-11-24 08:15:06,753 | INFO     | [monitor] cgroup control has ended
[2025-11-24 09:19:34] 2025-11-24 08:15:07,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23372219311936)>', '<ExcThread(monitor, started 23371985164032)>']
[2025-11-24 09:19:34] 2025-11-24 08:15:07,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 09:19:34] 2025-11-24 08:15:07,896 | INFO     | [monitor] control thread has ended
[2025-11-24 09:19:34] 2025-11-24 08:15:12,783 | INFO     | all workflow threads have been joined
[2025-11-24 09:19:34] 2025-11-24 08:15:12,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 09:19:34] 2025-11-24 08:15:12,783 | INFO     | traces error code: 0
[2025-11-24 09:19:34] 2025-11-24 08:15:12,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 09:19:34] 2025-11-24 08:15:12,943 [wrapper] ==== pilot stdout END ====
[2025-11-24 09:19:34] 2025-11-24 08:15:12,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 09:19:34] 2025-11-24 08:15:12,949 [wrapper] pilotpid: 1131901
[2025-11-24 09:19:34] 2025-11-24 08:15:12,952 [wrapper] Pilot exit status: 0
[2025-11-24 09:19:34] 2025-11-24 08:15:12,963 [wrapper] pandaids: 6893855662
[2025-11-24 09:19:34] 2025-11-24 08:15:13,045 [wrapper] cleanup supervisor_pilot 2063487 1131902
[2025-11-24 09:19:34] 2025-11-24 08:15:13,048 [wrapper] Test setup, not cleaning
[2025-11-24 09:19:34] 2025-11-24 08:15:13,051 [wrapper] apfmon messages muted
[2025-11-24 09:19:34] 2025-11-24 08:15:13,054 [wrapper] ==== wrapper stdout END ====
[2025-11-24 09:19:34] 2025-11-24 08:15:13,057 [wrapper] ==== wrapper stderr END ====
[2025-11-24 09:19:34]  *** Error codes and diagnostics ***
[2025-11-24 09:19:34]     "exeErrorCode": 0,
[2025-11-24 09:19:34]     "exeErrorDiag": "",
[2025-11-24 09:19:34]     "pilotErrorCode": 0,
[2025-11-24 09:19:34]     "pilotErrorDiag": "",
[2025-11-24 09:19:34]  *** Listing of results directory ***
[2025-11-24 09:19:34] total 1320016
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:39 queuedata.json
[2025-11-24 09:19:34] -rwx------ 1 boinc boinc     36292 Nov 20 13:40 runpilot2-wrapper.sh
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc       100 Nov 23 16:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 09:19:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 16:42 run_atlas
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc       105 Nov 23 16:42 job.xml
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc 412396500 Nov 23 16:42 EVNT.47493127._000451.pool.root.1
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc      6636 Nov 23 16:42 init_data.xml
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:42 start_atlas.sh
[2025-11-24 09:19:34] drwxrwx--x 2 boinc boinc      4096 Nov 23 16:42 shared
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc    590102 Nov 23 16:42 input.tar.gz
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc         0 Nov 23 16:42 boinc_lockfile
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc      2785 Nov 23 16:42 pandaJob.out
[2025-11-24 09:19:34] -rw------- 1 boinc boinc    989785 Nov 23 16:42 agis_schedconf.cvmfs.json
[2025-11-24 09:19:34] drwx------ 5 boinc boinc      4096 Nov 23 16:42 pilot3
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc       531 Nov 24 09:08 boinc_task_state.xml
[2025-11-24 09:19:34] -rw------- 1 boinc boinc 915261292 Nov 24 09:13 HITS.47523449._004503.pool.root.1
[2025-11-24 09:19:34] -rw------- 1 boinc boinc      1045 Nov 24 09:14 memory_monitor_summary.json
[2025-11-24 09:19:34] -rw------- 1 boinc boinc   1526164 Nov 24 09:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 09:19:34] -rw------- 1 boinc boinc   1716516 Nov 24 09:14 log.47523449._004503.job.log.tgz.1
[2025-11-24 09:19:34] -rw------- 1 boinc boinc        95 Nov 24 09:14 pilot_heartbeat.json
[2025-11-24 09:19:34] -rw------- 1 boinc boinc      8631 Nov 24 09:14 heartbeat.json
[2025-11-24 09:19:34] -rw------- 1 boinc boinc      5019 Nov 24 09:15 pilotlog.txt
[2025-11-24 09:19:34] -rw------- 1 boinc boinc   8342945 Nov 24 09:15 log.47523449._004503.job.log.1
[2025-11-24 09:19:34] -rw------- 1 boinc boinc       353 Nov 24 09:15 output.list
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc       620 Nov 24 09:15 runtime_log
[2025-11-24 09:19:34] -rw------- 1 boinc boinc  10076160 Nov 24 09:15 result.tar.gz
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc      9206 Nov 24 09:15 runtime_log.err
[2025-11-24 09:19:34] -rw------- 1 boinc boinc       670 Nov 24 09:15 OcvLDmY8Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKpHKDmC8FFKn.diag
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc        28 Nov 24 09:19 wrapper_checkpoint.txt
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc      8192 Nov 24 09:19 boinc_mmap_file
[2025-11-24 09:19:34] -rw-r--r-- 1 boinc boinc     21060 Nov 24 09:19 stderr.txt
[2025-11-24 09:19:34] HITS file was successfully produced:
[2025-11-24 09:19:34] -rw------- 1 boinc boinc 915261292 Nov 24 09:13 shared/HITS.pool.root.1
[2025-11-24 09:19:34]  *** Contents of shared directory: ***
[2025-11-24 09:19:34] total 1306988
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc 412396500 Nov 23 16:42 ATLAS.root_0
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc     15847 Nov 23 16:42 start_atlas.sh
[2025-11-24 09:19:34] -rw-r--r-- 2 boinc boinc    590102 Nov 23 16:42 input.tar.gz
[2025-11-24 09:19:34] -rw------- 1 boinc boinc 915261292 Nov 24 09:13 HITS.pool.root.1
[2025-11-24 09:19:34] -rw------- 1 boinc boinc  10076160 Nov 24 09:15 result.tar.gz
09:19:36 (1128102): run_atlas exited; CPU time 238298.885956
09:19:36 (1128102): called boinc_finish(0)

</stderr_txt>
]]>

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