Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:06:35 (3679241): wrapper (7.7.26015): starting
10:06:35 (3679241): wrapper: running run_atlas (--nthreads 4)
[2025-11-22 10:06:35] Arguments: --nthreads 4
[2025-11-22 10:06:35] Threads: 4
[2025-11-22 10:06:35] Checking for CVMFS
[2025-11-22 10:06:35] No cvmfs_config command found, will try listing directly
[2025-11-22 10:06:35] CVMFS is ok
[2025-11-22 10:06:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 10:06:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 10:06:35] Further information can be found at the LHC@home message board.
[2025-11-22 10:06:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 10:06:35] Checking for apptainer binary...
[2025-11-22 10:06:35] which: no apptainer in ((null))
[2025-11-22 10:06:35] apptainer is not installed, using version from CVMFS
[2025-11-22 10:06:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 10:06:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-11-22 10:06:35] apptainer works
[2025-11-22 10:06:35] Set ATHENA_PROC_NUMBER=4
[2025-11-22 10:06:35] Set ATHENA_CORE_NUMBER=4
[2025-11-22 10:06:35] Starting ATLAS job with PandaID=6893853452
[2025-11-22 10:06:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:47:36]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:47:37] 2025-11-23 01:30:44,498 | INFO     | time since job start (59037s) is within the limit (172800.0s)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,820 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 02:47:37] 2025-11-23 01:30:45,829 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2913.42684375
[2025-11-23 02:47:37] 2025-11-23 01:30:45,841 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6893853452/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,842 | INFO     | extracted standard info from prmon json
[2025-11-23 02:47:37] 2025-11-23 01:30:45,842 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:47:37] 2025-11-23 01:30:45,842 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:47:37] 2025-11-23 01:30:45,859 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:47:37] 2025-11-23 01:30:45,860 | INFO     | sum of square deviations: 281257435797.99585
[2025-11-23 02:47:37] 2025-11-23 01:30:45,878 | INFO     | sum of deviations: 1078995396287.9043
[2025-11-23 02:47:37] 2025-11-23 01:30:45,879 | INFO     | mean x: 1763831928.5020661
[2025-11-23 02:47:37] 2025-11-23 01:30:45,879 | INFO     | mean y: 2299170.5475206613
[2025-11-23 02:47:37] 2025-11-23 01:30:45,879 | INFO     | intersect: -6764336261.790822
[2025-11-23 02:47:37] 2025-11-23 01:30:45,880 | INFO     | chi2: 4.006616106536967
[2025-11-23 02:47:37] 2025-11-23 01:30:45,881 | INFO     | sum of square deviations: 276921578367.99585
[2025-11-23 02:47:37] 2025-11-23 01:30:45,899 | INFO     | sum of deviations: 1287096170036.376
[2025-11-23 02:47:37] 2025-11-23 01:30:45,899 | INFO     | mean x: 1763831776.0020769
[2025-11-23 02:47:37] 2025-11-23 01:30:45,900 | INFO     | mean y: 2306483.3125649015
[2025-11-23 02:47:37] 2025-11-23 01:30:45,900 | INFO     | intersect: -8195758603.778187
[2025-11-23 02:47:37] 2025-11-23 01:30:45,901 | INFO     | chi2: 1.661384309196834
[2025-11-23 02:47:37] 2025-11-23 01:30:45,901 | INFO     | current chi2=1.661384309196834 (change=58.53397817459442 %)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,902 | INFO     | sum of square deviations: 272630512475.49533
[2025-11-23 02:47:37] 2025-11-23 01:30:45,920 | INFO     | sum of deviations: 1272018108941.0803
[2025-11-23 02:47:37] 2025-11-23 01:30:45,920 | INFO     | mean x: 1763831623.5020876
[2025-11-23 02:47:37] 2025-11-23 01:30:45,920 | INFO     | mean y: 2305947.459290188
[2025-11-23 02:47:37] 2025-11-23 01:30:45,920 | INFO     | intersect: -8227241603.346357
[2025-11-23 02:47:37] 2025-11-23 01:30:45,922 | INFO     | chi2: 1.6608339639668424
[2025-11-23 02:47:37] 2025-11-23 01:30:45,922 | INFO     | current chi2=1.6608339639668424 (change=0.03312570288194246 %)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,922 | INFO     | right removable region: 957
[2025-11-23 02:47:37] 2025-11-23 01:30:45,923 | INFO     | sum of square deviations: 276921577147.99585
[2025-11-23 02:47:37] 2025-11-23 01:30:45,941 | INFO     | sum of deviations: 918142445948.3386
[2025-11-23 02:47:37] 2025-11-23 01:30:45,941 | INFO     | mean x: 1763832081.0020769
[2025-11-23 02:47:37] 2025-11-23 01:30:45,941 | INFO     | mean y: 2304816.8307372793
[2025-11-23 02:47:37] 2025-11-23 01:30:45,941 | INFO     | intersect: -5845737498.152573
[2025-11-23 02:47:37] 2025-11-23 01:30:45,943 | INFO     | chi2: 2.4240603570543033
[2025-11-23 02:47:37] 2025-11-23 01:30:45,943 | INFO     | current chi2=2.4240603570543033 (change=39.498562063399476 %)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,944 | INFO     | sum of square deviations: 272630510035.49533
[2025-11-23 02:47:37] 2025-11-23 01:30:45,961 | INFO     | sum of deviations: 889240459611.7263
[2025-11-23 02:47:37] 2025-11-23 01:30:45,962 | INFO     | mean x: 1763832233.5020876
[2025-11-23 02:47:37] 2025-11-23 01:30:45,962 | INFO     | mean y: 2305844.636743215
[2025-11-23 02:47:37] 2025-11-23 01:30:45,962 | INFO     | intersect: -5750795617.826742
[2025-11-23 02:47:37] 2025-11-23 01:30:45,963 | INFO     | chi2: 2.411153423953281
[2025-11-23 02:47:37] 2025-11-23 01:30:45,963 | INFO     | current chi2=2.411153423953281 (change=0.5324509789313456 %)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,963 | INFO     | left removable region: 20
[2025-11-23 02:47:37] 2025-11-23 01:30:45,964 | INFO     | sum of square deviations: 255091905965.99576
[2025-11-23 02:47:37] 2025-11-23 01:30:45,981 | INFO     | sum of deviations: 1025583049864.2712
[2025-11-23 02:47:37] 2025-11-23 01:30:45,982 | INFO     | mean x: 1763832203.0021346
[2025-11-23 02:47:37] 2025-11-23 01:30:45,982 | INFO     | mean y: 2314647.8644610457
[2025-11-23 02:47:37] 2025-11-23 01:30:45,982 | INFO     | intersect: -7089076211.259399
[2025-11-23 02:47:37] 2025-11-23 01:30:45,983 | INFO     | chi2: 0.04313616405814538
[2025-11-23 02:47:37] 2025-11-23 01:30:45,983 | INFO     | current memory leak: 4.02 B/s (using 937 data points, chi2=0.04)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,984 | INFO     | could have reported an average CPU frequency of 2738 MHz (36 samples)
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | ..............................
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . Timing measurements:
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . get job = 0 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . initial setup = 1 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . payload setup = 6 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . stage-in = 0 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . payload execution = 58999 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . stage-out = 2 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | . log creation = 0 s
[2025-11-23 02:47:37] 2025-11-23 01:30:45,985 | INFO     | ..............................
[2025-11-23 02:47:37] 2025-11-23 01:30:46,077 | INFO     | 
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | job summary report
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | --------------------------------------------------
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | PanDA job id: 6893853452
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | task id: 47523449
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | errors: (none)
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | pilot state: finished 
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | transexitcode: 0
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | exeerrorcode: 0
[2025-11-23 02:47:37] 2025-11-23 01:30:46,078 | INFO     | exeerrordiag: 
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | exitcode: 0
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | exitmsg: OK
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | cpuconsumptiontime: 234051 s
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | nevents: 1000
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | neventsw: 0
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | pid: 3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | pgrp: 3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | corecount: 4
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | event service: False
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | sizes: {0: 2298647, 1: 2298846, 5: 2299108, 12: 2299164, 59010: 2350981, 59014: 2360025, 59015: 2360209, 59023: 2360455}
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | --------------------------------------------------
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | 
[2025-11-23 02:47:37] 2025-11-23 01:30:46,079 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-11-23 02:47:37] 2025-11-23 01:30:46,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,098 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,098 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | job 6893853452 has completed (purged errors)
[2025-11-23 02:47:37] 2025-11-23 01:30:46,100 | INFO     | overall cleanup function is called
[2025-11-23 02:47:37] 2025-11-23 01:30:47,113 | INFO     | --- collectZombieJob: --- 10, [3690557]
[2025-11-23 02:47:37] 2025-11-23 01:30:47,113 | INFO     | zombie collector waiting for pid 3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:47,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:47:37] 2025-11-23 01:30:47,113 | INFO     | collected zombie processes
[2025-11-23 02:47:37] 2025-11-23 01:30:47,113 | INFO     | will attempt to kill all subprocesses of pid=3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:47,431 | INFO     | process IDs to be killed: [3690557] (in reverse order)
[2025-11-23 02:47:37] 2025-11-23 01:30:47,528 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:47:37] 2025-11-23 01:30:47,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:47:37] 2025-11-23 01:30:47,539 | INFO     | did not find any defunct processes belonging to 3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:47,549 | INFO     | did not find any defunct processes belonging to 3690557
[2025-11-23 02:47:37] 2025-11-23 01:30:47,550 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:47:37] 2025-11-23 01:30:47,551 | INFO     | ready for new job
[2025-11-23 02:47:37] 2025-11-23 01:30:47,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:47:37] 2025-11-23 01:30:47,556 | INFO     | ***************************************
[2025-11-23 02:47:37] 2025-11-23 01:30:47,556 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:47:37] 2025-11-23 01:30:47,556 | INFO     | ***************************************
[2025-11-23 02:47:37] 2025-11-23 01:30:47,556 | INFO     | 
[2025-11-23 02:47:37] 2025-11-23 01:30:47,560 | INFO     | architecture information:
[2025-11-23 02:47:37] 2025-11-23 01:30:47,560 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:47:37] 2025-11-23 01:30:47,574 | INFO     | cat /etc/os-release:
[2025-11-23 02:47:37] NAME="CentOS Linux"
[2025-11-23 02:47:37] VERSION="7 (Core)"
[2025-11-23 02:47:37] ID="centos"
[2025-11-23 02:47:37] ID_LIKE="rhel fedora"
[2025-11-23 02:47:37] VERSION_ID="7"
[2025-11-23 02:47:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:47:37] ANSI_COLOR="0;31"
[2025-11-23 02:47:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:47:37] HOME_URL="https://www.centos.org/"
[2025-11-23 02:47:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:47:37] 
[2025-11-23 02:47:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:47:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:47:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:47:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:47:37] 
[2025-11-23 02:47:37] 2025-11-23 01:30:47,574 | INFO     | ***************************************
[2025-11-23 02:47:37] 2025-11-23 01:30:48,077 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-11-23 02:47:37] 2025-11-23 01:30:48,092 | INFO     | sufficient remaining disk space (684009193472 B)
[2025-11-23 02:47:37] 2025-11-23 01:30:48,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:47:37] 2025-11-23 01:30:48,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:47:37] 2025-11-23 01:30:48,093 | INFO     | update_server=False
[2025-11-23 02:47:37] 2025-11-23 01:30:48,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:47:37] 2025-11-23 01:30:48,252 | INFO     | all data control threads have been joined
[2025-11-23 02:47:37] 2025-11-23 01:30:48,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:47:37] 2025-11-23 01:30:48,532 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 02:47:37] 2025-11-23 01:30:48,532 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 02:47:37] 2025-11-23 01:30:48,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:47:37] 2025-11-23 01:30:48,532 | INFO     | will abort loop
[2025-11-23 02:47:37] 2025-11-23 01:30:48,596 | INFO     | all job control threads have been joined
[2025-11-23 02:47:37] 2025-11-23 01:30:49,095 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:49,255 | INFO     | [data] control thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:49,537 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:49,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:47:37] 2025-11-23 01:30:49,558 | INFO     | all payload control threads have been joined
[2025-11-23 02:47:37] 2025-11-23 01:30:49,599 | INFO     | [job] control thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:49,855 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:49,856 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,306 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,306 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,308 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,411 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,412 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,437 | INFO     | [job] validate thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:50,563 | INFO     | [payload] control thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:51,088 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:47:37] 2025-11-23 01:30:51,548 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:52,094 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:30:52,320 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:47:37] 2025-11-23 01:31:18,007 | INFO     | PID=3683000 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 02:47:37] 2025-11-23 01:31:18,009 | INFO     | .. there are 4 such processes running
[2025-11-23 02:47:37] 2025-11-23 01:31:18,010 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:47:37] 2025-11-23 01:31:18,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:47:37] 2025-11-23 01:31:18,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:47:37] 2025-11-23 01:31:20,966 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:47:37] 2025-11-23 01:31:22,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23040942270272)>', '<ExcThread(monitor, started 23040704349952)>']
[2025-11-23 02:47:37] 2025-11-23 01:31:23,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:47:37] 2025-11-23 01:31:23,036 | INFO     | [monitor] control thread has ended
[2025-11-23 02:47:37] 2025-11-23 01:31:27,064 | INFO     | all workflow threads have been joined
[2025-11-23 02:47:37] 2025-11-23 01:31:27,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:47:37] 2025-11-23 01:31:27,064 | INFO     | traces error code: 0
[2025-11-23 02:47:37] 2025-11-23 01:31:27,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:47:37] 2025-11-23 01:31:27,206 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:47:37] 2025-11-23 01:31:27,209 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:47:37] 2025-11-23 01:31:27,211 [wrapper] pilotpid: 3683000
[2025-11-23 02:47:37] 2025-11-23 01:31:27,213 [wrapper] Pilot exit status: 0
[2025-11-23 02:47:37] 2025-11-23 01:31:27,221 [wrapper] pandaids: 6893853452
[2025-11-23 02:47:37] 2025-11-23 01:31:27,286 [wrapper] cleanup supervisor_pilot  352594 3683001
[2025-11-23 02:47:37] 2025-11-23 01:31:27,288 [wrapper] Test setup, not cleaning
[2025-11-23 02:47:37] 2025-11-23 01:31:27,291 [wrapper] apfmon messages muted
[2025-11-23 02:47:37] 2025-11-23 01:31:27,293 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:47:37] 2025-11-23 01:31:27,295 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:47:37]  *** Error codes and diagnostics ***
[2025-11-23 02:47:37]     "exeErrorCode": 0,
[2025-11-23 02:47:37]     "exeErrorDiag": "",
[2025-11-23 02:47:37]     "pilotErrorCode": 0,
[2025-11-23 02:47:37]     "pilotErrorDiag": "",
[2025-11-23 02:47:37]  *** Listing of results directory ***
[2025-11-23 02:47:37] total 1323688
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:21 queuedata.json
[2025-11-23 02:47:37] -rwx------ 1 boinc boinc     36292 Nov 20 13:21 runpilot2-wrapper.sh
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc       100 Nov 22 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:47:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 10:06 run_atlas
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc       105 Nov 22 10:06 job.xml
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc 410193797 Nov 22 10:06 EVNT.47493127._000416.pool.root.1
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc      6635 Nov 22 10:06 init_data.xml
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc     15847 Nov 22 10:06 start_atlas.sh
[2025-11-23 02:47:37] drwxrwx--x 2 boinc boinc      4096 Nov 22 10:06 shared
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc    590104 Nov 22 10:06 input.tar.gz
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc         0 Nov 22 10:06 boinc_lockfile
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc      2786 Nov 22 10:06 pandaJob.out
[2025-11-23 02:47:37] -rw------- 1 boinc boinc    989760 Nov 22 10:06 agis_schedconf.cvmfs.json
[2025-11-23 02:47:37] drwx------ 5 boinc boinc      4096 Nov 22 10:06 pilot3
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc       532 Nov 23 02:25 boinc_task_state.xml
[2025-11-23 02:47:37] -rw------- 1 boinc boinc 921329405 Nov 23 02:29 HITS.47523449._004156.pool.root.1
[2025-11-23 02:47:37] -rw------- 1 boinc boinc      1045 Nov 23 02:30 memory_monitor_summary.json
[2025-11-23 02:47:37] -rw------- 1 boinc boinc   1526164 Nov 23 02:30 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:47:37] -rw------- 1 boinc boinc   1717401 Nov 23 02:30 log.47523449._004156.job.log.tgz.1
[2025-11-23 02:47:37] -rw------- 1 boinc boinc      8644 Nov 23 02:30 heartbeat.json
[2025-11-23 02:47:37] -rw------- 1 boinc boinc        95 Nov 23 02:31 pilot_heartbeat.json
[2025-11-23 02:47:37] -rw------- 1 boinc boinc      5019 Nov 23 02:31 pilotlog.txt
[2025-11-23 02:47:37] -rw------- 1 boinc boinc   8288899 Nov 23 02:31 log.47523449._004156.job.log.1
[2025-11-23 02:47:37] -rw------- 1 boinc boinc       353 Nov 23 02:31 output.list
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc       620 Nov 23 02:31 runtime_log
[2025-11-23 02:47:37] -rw------- 1 boinc boinc  10024960 Nov 23 02:31 result.tar.gz
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc      9206 Nov 23 02:31 runtime_log.err
[2025-11-23 02:47:37] -rw------- 1 boinc boinc       670 Nov 23 02:31 D8uMDmaqIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLlHKDmvUjiwn.diag
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc        28 Nov 23 02:47 wrapper_checkpoint.txt
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc      8192 Nov 23 02:47 boinc_mmap_file
[2025-11-23 02:47:37] -rw-r--r-- 1 boinc boinc     21097 Nov 23 02:47 stderr.txt
[2025-11-23 02:47:37] HITS file was successfully produced:
[2025-11-23 02:47:37] -rw------- 1 boinc boinc 921329405 Nov 23 02:29 shared/HITS.pool.root.1
[2025-11-23 02:47:37]  *** Contents of shared directory: ***
[2025-11-23 02:47:37] total 1310712
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc 410193797 Nov 22 10:06 ATLAS.root_0
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc     15847 Nov 22 10:06 start_atlas.sh
[2025-11-23 02:47:37] -rw-r--r-- 2 boinc boinc    590104 Nov 22 10:06 input.tar.gz
[2025-11-23 02:47:37] -rw------- 1 boinc boinc 921329405 Nov 23 02:29 HITS.pool.root.1
[2025-11-23 02:47:37] -rw------- 1 boinc boinc  10024960 Nov 23 02:31 result.tar.gz
02:47:39 (3679241): run_atlas exited; CPU time 236230.814438
02:47:39 (3679241): called boinc_finish(0)

</stderr_txt>
]]>

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