Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:17:20 (2228300): wrapper (7.7.26015): starting
05:17:20 (2228300): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 05:17:20] Arguments: --nthreads 4
[2025-11-24 05:17:20] Threads: 4
[2025-11-24 05:17:20] Checking for CVMFS
[2025-11-24 05:17:20] No cvmfs_config command found, will try listing directly
[2025-11-24 05:17:20] CVMFS is ok
[2025-11-24 05:17:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:17:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:17:20] Further information can be found at the LHC@home message board.
[2025-11-24 05:17:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:17:20] Checking for apptainer binary...
[2025-11-24 05:17:20] which: no apptainer in ((null))
[2025-11-24 05:17:20] apptainer is not installed, using version from CVMFS
[2025-11-24 05:17:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:17:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-24 05:17:21] apptainer works
[2025-11-24 05:17:21] Set ATHENA_PROC_NUMBER=4
[2025-11-24 05:17:21] Set ATHENA_CORE_NUMBER=4
[2025-11-24 05:17:21] Starting ATLAS job with PandaID=6893855457
[2025-11-24 05:17:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:13:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:13:54] 2025-11-25 00:11:58,036 | INFO     | monitor loop #4959: job 0:6893855457 is in state 'finished'
[2025-11-25 01:13:54] 2025-11-25 00:11:58,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,232 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 01:13:54] 2025-11-25 00:11:58,242 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2658.783484375
[2025-11-25 01:13:54] 2025-11-25 00:11:58,255 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6893855457/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,256 | INFO     | extracted standard info from prmon json
[2025-11-25 01:13:54] 2025-11-25 00:11:58,256 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:13:54] 2025-11-25 00:11:58,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:13:54] 2025-11-25 00:11:58,277 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:13:54] 2025-11-25 00:11:58,279 | INFO     | sum of square deviations: 503027280859.8716
[2025-11-25 01:13:54] 2025-11-25 00:11:58,309 | INFO     | sum of deviations: 1034416592398.8932
[2025-11-25 01:13:54] 2025-11-25 00:11:58,309 | INFO     | mean x: 1763993690.1574469
[2025-11-25 01:13:54] 2025-11-25 00:11:58,309 | INFO     | mean y: 2294930.2978723403
[2025-11-25 01:13:54] 2025-11-25 00:11:58,309 | INFO     | intersect: -3625151157.450445
[2025-11-25 01:13:54] 2025-11-25 00:11:58,311 | INFO     | chi2: 4.889161624923606
[2025-11-25 01:13:54] 2025-11-25 00:11:58,313 | INFO     | sum of square deviations: 496632994137.2476
[2025-11-25 01:13:54] 2025-11-25 00:11:58,341 | INFO     | sum of deviations: 1327318340786.1118
[2025-11-25 01:13:54] 2025-11-25 00:11:58,342 | INFO     | mean x: 1763993537.6581197
[2025-11-25 01:13:54] 2025-11-25 00:11:58,342 | INFO     | mean y: 2301915.177777778
[2025-11-25 01:13:54] 2025-11-25 00:11:58,342 | INFO     | intersect: -4712207598.289512
[2025-11-25 01:13:54] 2025-11-25 00:11:58,343 | INFO     | chi2: 2.1927785301869394
[2025-11-25 01:13:54] 2025-11-25 00:11:58,344 | INFO     | current chi2=2.1927785301869394 (change=55.150213913797494 %)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,345 | INFO     | sum of square deviations: 490293127039.6176
[2025-11-25 01:13:54] 2025-11-25 00:11:58,374 | INFO     | sum of deviations: 1413306110187.0215
[2025-11-25 01:13:54] 2025-11-25 00:11:58,374 | INFO     | mean x: 1763993385.1587982
[2025-11-25 01:13:54] 2025-11-25 00:11:58,374 | INFO     | mean y: 2303982.929613734
[2025-11-25 01:13:54] 2025-11-25 00:11:58,374 | INFO     | intersect: -5082537088.833907
[2025-11-25 01:13:54] 2025-11-25 00:11:58,376 | INFO     | chi2: 1.8992604188798792
[2025-11-25 01:13:54] 2025-11-25 00:11:58,376 | INFO     | current chi2=1.8992604188798792 (change=13.385670612254541 %)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,376 | INFO     | right removable region: 1164
[2025-11-25 01:13:54] 2025-11-25 00:11:58,378 | INFO     | sum of square deviations: 496632881287.2476
[2025-11-25 01:13:54] 2025-11-25 00:11:58,407 | INFO     | sum of deviations: 826851075288.2909
[2025-11-25 01:13:54] 2025-11-25 00:11:58,407 | INFO     | mean x: 1763993842.6581197
[2025-11-25 01:13:54] 2025-11-25 00:11:58,407 | INFO     | mean y: 2299873.1957264957
[2025-11-25 01:13:54] 2025-11-25 00:11:58,407 | INFO     | intersect: -2934598307.6562448
[2025-11-25 01:13:54] 2025-11-25 00:11:58,409 | INFO     | chi2: 3.1678259701067755
[2025-11-25 01:13:54] 2025-11-25 00:11:58,409 | INFO     | current chi2=3.1678259701067755 (change=35.2071742942989 %)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,411 | INFO     | sum of square deviations: 490292901339.6176
[2025-11-25 01:13:54] 2025-11-25 00:11:58,439 | INFO     | sum of deviations: 810086687383.0133
[2025-11-25 01:13:54] 2025-11-25 00:11:58,439 | INFO     | mean x: 1763993995.1587982
[2025-11-25 01:13:54] 2025-11-25 00:11:58,439 | INFO     | mean y: 2300276.0377682406
[2025-11-25 01:13:54] 2025-11-25 00:11:58,439 | INFO     | intersect: -2912259670.062455
[2025-11-25 01:13:54] 2025-11-25 00:11:58,441 | INFO     | chi2: 3.165722196525659
[2025-11-25 01:13:54] 2025-11-25 00:11:58,441 | INFO     | current chi2=3.165722196525659 (change=0.06641064253430416 %)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,441 | INFO     | left removable region: 20
[2025-11-25 01:13:54] 2025-11-25 00:11:58,443 | INFO     | sum of square deviations: 464254247664.08307
[2025-11-25 01:13:54] 2025-11-25 00:11:58,470 | INFO     | sum of deviations: 1190279957171.309
[2025-11-25 01:13:54] 2025-11-25 00:11:58,471 | INFO     | mean x: 1763993964.6617134
[2025-11-25 01:13:54] 2025-11-25 00:11:58,471 | INFO     | mean y: 2309948.5253496505
[2025-11-25 01:13:54] 2025-11-25 00:11:58,471 | INFO     | intersect: -4520312453.471966
[2025-11-25 01:13:54] 2025-11-25 00:11:58,472 | INFO     | chi2: 0.12547936813052304
[2025-11-25 01:13:54] 2025-11-25 00:11:58,473 | INFO     | current memory leak: 2.56 B/s (using 1144 data points, chi2=0.13)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,474 | INFO     | could have reported an average CPU frequency of 2507 MHz (43 samples)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,474 | INFO     | ..............................
[2025-11-25 01:13:54] 2025-11-25 00:11:58,474 | INFO     | . Timing measurements:
[2025-11-25 01:13:54] 2025-11-25 00:11:58,474 | INFO     | . get job = 0 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,474 | INFO     | . initial setup = 1 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | . payload setup = 6 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | . stage-in = 0 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | . payload execution = 71627 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | . stage-out = 2 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | . log creation = 0 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,475 | INFO     | ..............................
[2025-11-25 01:13:54] 2025-11-25 00:11:58,577 | INFO     | 
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | job summary report
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | --------------------------------------------------
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | PanDA job id: 6893855457
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | task id: 47523449
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | errors: (none)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | pilot state: finished 
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | transexitcode: 0
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | exeerrorcode: 0
[2025-11-25 01:13:54] 2025-11-25 00:11:58,578 | INFO     | exeerrordiag: 
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | exitcode: 0
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | exitmsg: OK
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | cpuconsumptiontime: 276636 s
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | nevents: 1000
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | neventsw: 0
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | pid: 2239332
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | pgrp: 2239332
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | corecount: 4
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | event service: False
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | sizes: {0: 2298591, 1: 2298846, 6: 2299108, 12: 2299136, 71638: 2358289, 71641: 2368096, 71643: 2368280, 71648: 2368526}
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | --------------------------------------------------
[2025-11-25 01:13:54] 2025-11-25 00:11:58,579 | INFO     | 
[2025-11-25 01:13:54] 2025-11-25 00:11:58,580 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-25 01:13:54] 2025-11-25 00:11:58,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:13:54] 2025-11-25 00:11:58,604 | INFO     | job 6893855457 has completed (purged errors)
[2025-11-25 01:13:54] 2025-11-25 00:11:58,604 | INFO     | overall cleanup function is called
[2025-11-25 01:13:54] 2025-11-25 00:11:59,617 | INFO     | --- collectZombieJob: --- 10, [2239332]
[2025-11-25 01:13:54] 2025-11-25 00:11:59,618 | INFO     | zombie collector waiting for pid 2239332
[2025-11-25 01:13:54] 2025-11-25 00:11:59,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:13:54] 2025-11-25 00:11:59,618 | INFO     | collected zombie processes
[2025-11-25 01:13:54] 2025-11-25 00:11:59,618 | INFO     | will attempt to kill all subprocesses of pid=2239332
[2025-11-25 01:13:54] 2025-11-25 00:12:00,016 | INFO     | process IDs to be killed: [2239332] (in reverse order)
[2025-11-25 01:13:54] 2025-11-25 00:12:00,137 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:13:54] 2025-11-25 00:12:00,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:13:54] 2025-11-25 00:12:00,153 | INFO     | did not find any defunct processes belonging to 2239332
[2025-11-25 01:13:54] 2025-11-25 00:12:00,168 | INFO     | did not find any defunct processes belonging to 2239332
[2025-11-25 01:13:54] 2025-11-25 00:12:00,170 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:13:54] 2025-11-25 00:12:00,170 | INFO     | ready for new job
[2025-11-25 01:13:54] 2025-11-25 00:12:00,170 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:13:54] 2025-11-25 00:12:00,176 | INFO     | ***************************************
[2025-11-25 01:13:54] 2025-11-25 00:12:00,177 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:13:54] 2025-11-25 00:12:00,177 | INFO     | ***************************************
[2025-11-25 01:13:54] 2025-11-25 00:12:00,177 | INFO     | 
[2025-11-25 01:13:54] 2025-11-25 00:12:00,181 | INFO     | architecture information:
[2025-11-25 01:13:54] 2025-11-25 00:12:00,182 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:13:54] 2025-11-25 00:12:00,198 | INFO     | cat /etc/os-release:
[2025-11-25 01:13:54] NAME="CentOS Linux"
[2025-11-25 01:13:54] VERSION="7 (Core)"
[2025-11-25 01:13:54] ID="centos"
[2025-11-25 01:13:54] ID_LIKE="rhel fedora"
[2025-11-25 01:13:54] VERSION_ID="7"
[2025-11-25 01:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:13:54] ANSI_COLOR="0;31"
[2025-11-25 01:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:13:54] HOME_URL="https://www.centos.org/"
[2025-11-25 01:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:13:54] 
[2025-11-25 01:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:13:54] 
[2025-11-25 01:13:54] 2025-11-25 00:12:00,198 | INFO     | ***************************************
[2025-11-25 01:13:54] 2025-11-25 00:12:00,701 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-25 01:13:54] 2025-11-25 00:12:00,718 | INFO     | sufficient remaining disk space (686298234880 B)
[2025-11-25 01:13:54] 2025-11-25 00:12:00,718 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:13:54] 2025-11-25 00:12:00,718 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:13:54] 2025-11-25 00:12:00,718 | INFO     | update_server=False
[2025-11-25 01:13:54] 2025-11-25 00:12:00,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:13:54] 2025-11-25 00:12:00,719 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:13:54] 2025-11-25 00:12:00,806 | INFO     | all payload control threads have been joined
[2025-11-25 01:13:54] 2025-11-25 00:12:01,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:13:54] 2025-11-25 00:12:01,545 | INFO     | aborting loop
[2025-11-25 01:13:54] 2025-11-25 00:12:01,717 | INFO     | all data control threads have been joined
[2025-11-25 01:13:54] 2025-11-25 00:12:01,724 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:01,812 | INFO     | [payload] control thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,048 | INFO     | [job] validate thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,276 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,344 | INFO     | all job control threads have been joined
[2025-11-25 01:13:54] 2025-11-25 00:12:02,516 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,550 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,723 | INFO     | [data] control thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,723 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,736 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,874 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:02,944 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:03,056 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:03,349 | INFO     | [job] control thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:03,587 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:13:54] 2025-11-25 00:12:04,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:13:54] 2025-11-25 00:12:04,592 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:08,091 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:10,868 | INFO     | job.realtimelogging is not enabled
[2025-11-25 01:13:54] 2025-11-25 00:12:11,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:13:54] 2025-11-25 00:12:30,560 | INFO     | PID=2232390 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:13:54] 2025-11-25 00:12:30,560 | INFO     | .. there are 4 such processes running
[2025-11-25 01:13:54] 2025-11-25 00:12:30,560 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:13:54] 2025-11-25 00:12:30,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:13:54] 2025-11-25 00:12:30,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:13:54] 2025-11-25 00:12:35,210 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:13:54] 2025-11-25 00:12:36,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22630613886784)>', '<ExcThread(monitor, started 22630304290560)>']
[2025-11-25 01:13:54] 2025-11-25 00:12:36,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:13:54] 2025-11-25 00:12:36,584 | INFO     | [monitor] control thread has ended
[2025-11-25 01:13:54] 2025-11-25 00:12:41,242 | INFO     | all workflow threads have been joined
[2025-11-25 01:13:54] 2025-11-25 00:12:41,242 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:13:54] 2025-11-25 00:12:41,242 | INFO     | traces error code: 0
[2025-11-25 01:13:54] 2025-11-25 00:12:41,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:13:54] 2025-11-25 00:12:41,396 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:13:54] 2025-11-25 00:12:41,399 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:13:54] 2025-11-25 00:12:41,402 [wrapper] pilotpid: 2232390
[2025-11-25 01:13:54] 2025-11-25 00:12:41,405 [wrapper] Pilot exit status: 0
[2025-11-25 01:13:54] 2025-11-25 00:12:41,417 [wrapper] pandaids: 6893855457
[2025-11-25 01:13:54] 2025-11-25 00:12:41,501 [wrapper] cleanup supervisor_pilot 3314166 2232391
[2025-11-25 01:13:54] 2025-11-25 00:12:41,505 [wrapper] Test setup, not cleaning
[2025-11-25 01:13:54] 2025-11-25 00:12:41,509 [wrapper] apfmon messages muted
[2025-11-25 01:13:54] 2025-11-25 00:12:41,513 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:13:54] 2025-11-25 00:12:41,516 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:13:54]  *** Error codes and diagnostics ***
[2025-11-25 01:13:54]     "exeErrorCode": 0,
[2025-11-25 01:13:54]     "exeErrorDiag": "",
[2025-11-25 01:13:54]     "pilotErrorCode": 0,
[2025-11-25 01:13:54]     "pilotErrorDiag": "",
[2025-11-25 01:13:54]  *** Listing of results directory ***
[2025-11-25 01:13:54] total 1328104
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:36 queuedata.json
[2025-11-25 01:13:54] -rwx------ 1 boinc boinc     36292 Nov 20 13:37 runpilot2-wrapper.sh
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc       100 Nov 24 05:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:13:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 05:17 run_atlas
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc       105 Nov 24 05:17 job.xml
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc      6636 Nov 24 05:17 init_data.xml
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc 410631725 Nov 24 05:17 EVNT.47493127._000444.pool.root.1
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc    590105 Nov 24 05:17 input.tar.gz
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:17 start_atlas.sh
[2025-11-25 01:13:54] drwxrwx--x 2 boinc boinc      4096 Nov 24 05:17 shared
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc         0 Nov 24 05:17 boinc_lockfile
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc      2786 Nov 24 05:17 pandaJob.out
[2025-11-25 01:13:54] -rw------- 1 boinc boinc    989786 Nov 24 05:17 agis_schedconf.cvmfs.json
[2025-11-25 01:13:54] drwx------ 5 boinc boinc      4096 Nov 24 05:17 pilot3
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc       532 Nov 25 01:01 boinc_task_state.xml
[2025-11-25 01:13:54] -rw------- 1 boinc boinc 921856963 Nov 25 01:11 HITS.47523449._004438.pool.root.1
[2025-11-25 01:13:54] -rw------- 1 boinc boinc        95 Nov 25 01:11 pilot_heartbeat.json
[2025-11-25 01:13:54] -rw------- 1 boinc boinc      1045 Nov 25 01:11 memory_monitor_summary.json
[2025-11-25 01:13:54] -rw------- 1 boinc boinc   1516227 Nov 25 01:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:13:54] -rw------- 1 boinc boinc   1872431 Nov 25 01:11 log.47523449._004438.job.log.tgz.1
[2025-11-25 01:13:54] -rw------- 1 boinc boinc      8632 Nov 25 01:11 heartbeat.json
[2025-11-25 01:13:54] -rw------- 1 boinc boinc      4905 Nov 25 01:12 pilotlog.txt
[2025-11-25 01:13:54] -rw------- 1 boinc boinc   9912917 Nov 25 01:12 log.47523449._004438.job.log.1
[2025-11-25 01:13:54] -rw------- 1 boinc boinc       353 Nov 25 01:12 output.list
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc       620 Nov 25 01:12 runtime_log
[2025-11-25 01:13:54] -rw------- 1 boinc boinc  11806720 Nov 25 01:12 result.tar.gz
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc      9206 Nov 25 01:12 runtime_log.err
[2025-11-25 01:13:54] -rw------- 1 boinc boinc       670 Nov 25 01:12 V6eMDmU5Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8cGKDmmBCqan.diag
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc        28 Nov 25 01:13 wrapper_checkpoint.txt
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc      8192 Nov 25 01:13 boinc_mmap_file
[2025-11-25 01:13:54] -rw-r--r-- 1 boinc boinc     21098 Nov 25 01:13 stderr.txt
[2025-11-25 01:13:54] HITS file was successfully produced:
[2025-11-25 01:13:54] -rw------- 1 boinc boinc 921856963 Nov 25 01:11 shared/HITS.pool.root.1
[2025-11-25 01:13:54]  *** Contents of shared directory: ***
[2025-11-25 01:13:54] total 1313396
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc 410631725 Nov 24 05:17 ATLAS.root_0
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc    590105 Nov 24 05:17 input.tar.gz
[2025-11-25 01:13:54] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:17 start_atlas.sh
[2025-11-25 01:13:54] -rw------- 1 boinc boinc 921856963 Nov 25 01:11 HITS.pool.root.1
[2025-11-25 01:13:54] -rw------- 1 boinc boinc  11806720 Nov 25 01:12 result.tar.gz
01:13:56 (2228300): run_atlas exited; CPU time 279549.207453
01:13:56 (2228300): called boinc_finish(0)

</stderr_txt>
]]>

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