Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:52 (3910103): wrapper (7.7.26015): starting
12:26:52 (3910103): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 12:26:53] Arguments: --nthreads 12
[2025-11-20 12:26:53] Threads: 12
[2025-11-20 12:26:53] Checking for CVMFS
[2025-11-20 12:26:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:26:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:26:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:26:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:26:53] 2.11.5.0 2718463 19930 216636 153095 3 147 37618843 45568001 13020 130560 0 118965271 99.775 82552711 19876 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 12:26:53] CVMFS is ok
[2025-11-20 12:26:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:26:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:26:53] Further information can be found at the LHC@home message board.
[2025-11-20 12:26:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:26:53] Checking for apptainer binary...
[2025-11-20 12:26:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:26:53] Running /usr/bin/apptainer --version
[2025-11-20 12:26:53] apptainer version 1.4.1-1.el9
[2025-11-20 12:26:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:26:54] wns0043.triumf.lcg
[2025-11-20 12:26:54] apptainer works
[2025-11-20 12:26:54] Set ATHENA_PROC_NUMBER=12
[2025-11-20 12:26:54] Set ATHENA_CORE_NUMBER=12
[2025-11-20 12:26:54] Starting ATLAS job with PandaID=6893871897
[2025-11-20 12:26:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 12:32:19]  *** The last 200 lines of the pilot log: ***
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | wrong length of table data, x=[1763670473.0, 1763670534.0], y=[1621.0, 372737.0] (must be same and length>=4)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,208 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . Timing measurements:
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . get job = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . initial setup = 3 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload setup = 11 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-in = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload execution = 108 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-out = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | . log creation = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893871897/pilotlog.txt
[2025-11-20 12:32:19] 2025-11-20 20:31:43,230 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 12:32:19] - Log from pilotlog.txt -
[2025-11-20 12:32:19] 2025-11-20 20:31:43,204 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893871897/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | INFO     | extracted standard info from prmon json
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | wrong length of table data, x=[1763670473.0, 1763670534.0], y=[1621.0, 372737.0] (must be same and length>=4)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,208 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . Timing measurements:
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . get job = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . initial setup = 3 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload setup = 11 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-in = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload execution = 108 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-out = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | . log creation = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893871897/pilotlog.txt
[2025-11-20 12:32:19] 2025-11-20 20:31:43,231 | WARNING  | 
[2025-11-20 12:32:19] [begin log extracts]
[2025-11-20 12:32:19] - Log from pilotlog.txt -
[2025-11-20 12:32:19] 2025-11-20 20:31:43,204 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893871897/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | INFO     | extracted standard info from prmon json
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 12:32:19] 2025-11-20 20:31:43,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 12:32:19] 2025-11-20 20:31:43,207 | WARNING  | wrong length of table data, x=[1763670473.0, 1763670534.0], y=[1621.0, 372737.0] (must be same and length>=4)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,208 | INFO     | could have reported an average CPU frequency of 1368 MHz (4 samples)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . Timing measurements:
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . get job = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . initial setup = 3 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload setup = 11 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-in = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . payload execution = 108 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,209 | INFO     | . stage-out = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | . log creation = 0 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | ..............................
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 12:32:19] 2025-11-20 20:31:43,210 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893871897/pilotlog.txt
[2025-11-20 12:32:19] [end log extracts]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,231 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,232 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 12:32:19] 2025-11-20 20:31:43,335 | INFO     | 
[2025-11-20 12:32:19] 2025-11-20 20:31:43,335 | INFO     | job summary report
[2025-11-20 12:32:19] 2025-11-20 20:31:43,335 | INFO     | --------------------------------------------------
[2025-11-20 12:32:19] 2025-11-20 20:31:43,335 | INFO     | PanDA job id: 6893871897
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | task id: 47523449
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 12:29:26,499 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | pilot state: failed 
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | transexitcode: 65
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | exeerrorcode: 65
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | exitcode: 65
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 12:32:19] 2025-11-20 20:31:43,336 | INFO     | cpuconsumptiontime: 76 s
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | nevents: 0
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | neventsw: 0
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | pid: 3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | pgrp: 3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | corecount: 12
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | event service: False
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | sizes: {0: 2298632, 1: 2298831, 8: 2299093, 11: 2299121, 123: 2324570, 124: 2324546, 125: 2328992, 127: 2329020, 252: 2329186}
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | --------------------------------------------------
[2025-11-20 12:32:19] 2025-11-20 20:31:43,337 | INFO     | 
[2025-11-20 12:32:19] 2025-11-20 20:31:43,338 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 12:32:19] 2025-11-20 20:31:43,370 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,371 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,371 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | job 6893871897 has completed (purged errors)
[2025-11-20 12:32:19] 2025-11-20 20:31:43,373 | INFO     | overall cleanup function is called
[2025-11-20 12:32:19] 2025-11-20 20:31:44,384 | INFO     | --- collectZombieJob: --- 10, [3920358]
[2025-11-20 12:32:19] 2025-11-20 20:31:44,384 | INFO     | zombie collector waiting for pid 3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:44,385 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 12:32:19] 2025-11-20 20:31:44,385 | INFO     | collected zombie processes
[2025-11-20 12:32:19] 2025-11-20 20:31:44,385 | INFO     | will attempt to kill all subprocesses of pid=3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:44,719 | INFO     | process IDs to be killed: [3920358] (in reverse order)
[2025-11-20 12:32:19] 2025-11-20 20:31:44,862 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 12:32:19] 2025-11-20 20:31:44,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 12:32:19] 2025-11-20 20:31:44,876 | INFO     | did not find any defunct processes belonging to 3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:44,889 | INFO     | did not find any defunct processes belonging to 3920358
[2025-11-20 12:32:19] 2025-11-20 20:31:44,890 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 12:32:19] 2025-11-20 20:31:44,890 | INFO     | ready for new job
[2025-11-20 12:32:19] 2025-11-20 20:31:44,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 12:32:19] 2025-11-20 20:31:44,893 | INFO     | ***************************************
[2025-11-20 12:32:19] 2025-11-20 20:31:44,893 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 12:32:19] 2025-11-20 20:31:44,893 | INFO     | ***************************************
[2025-11-20 12:32:19] 2025-11-20 20:31:44,893 | INFO     | 
[2025-11-20 12:32:19] 2025-11-20 20:31:44,896 | INFO     | architecture information:
[2025-11-20 12:32:19] 2025-11-20 20:31:44,897 | INFO     | executing command: cat /etc/os-release
[2025-11-20 12:32:19] 2025-11-20 20:31:44,914 | INFO     | cat /etc/os-release:
[2025-11-20 12:32:19] NAME="CentOS Linux"
[2025-11-20 12:32:19] VERSION="7 (Core)"
[2025-11-20 12:32:19] ID="centos"
[2025-11-20 12:32:19] ID_LIKE="rhel fedora"
[2025-11-20 12:32:19] VERSION_ID="7"
[2025-11-20 12:32:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 12:32:19] ANSI_COLOR="0;31"
[2025-11-20 12:32:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 12:32:19] HOME_URL="https://www.centos.org/"
[2025-11-20 12:32:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 12:32:19] 
[2025-11-20 12:32:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 12:32:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 12:32:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 12:32:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 12:32:19] 
[2025-11-20 12:32:19] 2025-11-20 20:31:44,914 | INFO     | ***************************************
[2025-11-20 12:32:19] 2025-11-20 20:31:45,417 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 12:32:19] 2025-11-20 20:31:45,438 | INFO     | sufficient remaining disk space (2061435404288 B)
[2025-11-20 12:32:19] 2025-11-20 20:31:45,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 12:32:19] 2025-11-20 20:31:45,439 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 12:32:19] 2025-11-20 20:31:45,439 | INFO     | update_server=False
[2025-11-20 12:32:19] 2025-11-20 20:31:45,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 12:32:19] 2025-11-20 20:31:45,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:32:19] 2025-11-20 20:31:45,451 | INFO     | aborting loop
[2025-11-20 12:32:19] 2025-11-20 20:31:46,002 | INFO     | all data control threads have been joined
[2025-11-20 12:32:19] 2025-11-20 20:31:46,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 12:32:19] 2025-11-20 20:31:46,358 | INFO     | all payload control threads have been joined
[2025-11-20 12:32:19] 2025-11-20 20:31:46,444 | INFO     | [job] retrieve thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:46,456 | INFO     | [job] job monitor thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:46,667 | INFO     | all job control threads have been joined
[2025-11-20 12:32:19] 2025-11-20 20:31:46,718 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:46,841 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 12:32:19] 2025-11-20 20:31:46,892 | INFO     | [job] validate thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,007 | INFO     | [data] control thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,076 | INFO     | [payload] validate_post thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,319 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,364 | INFO     | [payload] control thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,478 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,535 | INFO     | [payload] failed_post thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,582 | INFO     | [data] copytool_in thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,658 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:47,673 | INFO     | [job] control thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:48,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:32:19] 2025-11-20 20:31:48,847 | INFO     | [data] copytool_out thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:49,357 | INFO     | [job] queue monitor thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:31:50,047 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 12:32:19] 2025-11-20 20:32:11,817 | INFO     | [monitor] cgroup control has ended
[2025-11-20 12:32:19] 2025-11-20 20:32:13,873 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444481591104)>', '<ExcThread(monitor, started 140443794786048)>']
[2025-11-20 12:32:19] 2025-11-20 20:32:15,083 | INFO     | PID=3913774 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 12:32:19] 2025-11-20 20:32:15,083 | INFO     | .. there are 28 such processes running
[2025-11-20 12:32:19] 2025-11-20 20:32:15,084 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 12:32:19] 2025-11-20 20:32:15,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 12:32:19] 2025-11-20 20:32:15,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 12:32:19] 2025-11-20 20:32:15,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 12:32:19] 2025-11-20 20:32:15,084 | INFO     | [monitor] control thread has ended
[2025-11-20 12:32:19] 2025-11-20 20:32:18,899 | INFO     | all workflow threads have been joined
[2025-11-20 12:32:19] 2025-11-20 20:32:18,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 12:32:19] 2025-11-20 20:32:18,900 | INFO     | traces error code: 0
[2025-11-20 12:32:19] 2025-11-20 20:32:18,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 12:32:19] 2025-11-20 20:32:19,054 [wrapper] ==== pilot stdout END ====
[2025-11-20 12:32:19] 2025-11-20 20:32:19,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 12:32:19] 2025-11-20 20:32:19,076 [wrapper] pilotpid: 3913774
[2025-11-20 12:32:19] 2025-11-20 20:32:19,081 [wrapper] Pilot exit status: 0
[2025-11-20 12:32:19] 2025-11-20 20:32:19,126 [wrapper] pandaids: 6893871897
[2025-11-20 12:32:19] 2025-11-20 20:32:19,285 [wrapper] cleanup supervisor_pilot 3913780 3913775
[2025-11-20 12:32:19] 2025-11-20 20:32:19,288 [wrapper] Test setup, not cleaning
[2025-11-20 12:32:19] 2025-11-20 20:32:19,305 [wrapper] apfmon messages muted
[2025-11-20 12:32:19] 2025-11-20 20:32:19,313 [wrapper] ==== wrapper stdout END ====
[2025-11-20 12:32:19] 2025-11-20 20:32:19,331 [wrapper] ==== wrapper stderr END ====
[2025-11-20 12:32:19]  *** Error codes and diagnostics ***
[2025-11-20 12:32:19]     "exeErrorCode": 65,
[2025-11-20 12:32:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 12:32:19]     "pilotErrorCode": 1305,
[2025-11-20 12:32:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 12:32:19]  *** Listing of results directory ***
[2025-11-20 12:32:19] total 404720
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc      5112 Nov 20 07:09 queuedata.json
[2025-11-20 12:32:19] -rwx------. 1 boinc boinc     36292 Nov 20 07:10 runpilot2-wrapper.sh
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc       100 Nov 20 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 12:32:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 12:26 run_atlas
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc       105 Nov 20 12:26 job.xml
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc      6595 Nov 20 12:26 init_data.xml
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc 410213842 Nov 20 12:26 EVNT.47493127._000670.pool.root.1
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc     15847 Nov 20 12:26 start_atlas.sh
[2025-11-20 12:32:19] drwxrwx--x. 2 boinc boinc      4096 Nov 20 12:26 shared
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc    590101 Nov 20 12:26 input.tar.gz
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc         0 Nov 20 12:26 boinc_lockfile
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc      2785 Nov 20 12:26 pandaJob.out
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc    989464 Nov 20 12:27 agis_schedconf.cvmfs.json
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc   1526164 Nov 20 12:27 agis_ddmendpoints.agis.ALL.json
[2025-11-20 12:32:19] drwx------. 5 boinc boinc      4096 Nov 20 12:27 pilot3
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc       524 Nov 20 12:29 boinc_task_state.xml
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc       989 Nov 20 12:29 memory_monitor_summary.json
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc     48587 Nov 20 12:29 log.47523449._006697.job.log.tgz.1
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc     10336 Nov 20 12:31 heartbeat.json
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc        95 Nov 20 12:32 pilot_heartbeat.json
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc      4823 Nov 20 12:32 pilotlog.txt
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc    101179 Nov 20 12:32 log.47523449._006697.job.log.1
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc      8192 Nov 20 12:32 boinc_mmap_file
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc       186 Nov 20 12:32 output.list
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc       620 Nov 20 12:32 runtime_log
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc    174080 Nov 20 12:32 result.tar.gz
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc      8636 Nov 20 12:32 runtime_log.err
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc       645 Nov 20 12:32 kPvNDmVTLg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWqGKDm1dxJfn.diag
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc     22500 Nov 20 12:32 stderr.txt
[2025-11-20 12:32:19] -rw-r--r--. 1 boinc boinc        23 Nov 20 12:32 wrapper_checkpoint.txt
[2025-11-20 12:32:19] No HITS result produced
[2025-11-20 12:32:19]  *** Contents of shared directory: ***
[2025-11-20 12:32:19] total 401372
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc 410213842 Nov 20 12:26 ATLAS.root_0
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc     15847 Nov 20 12:26 start_atlas.sh
[2025-11-20 12:32:19] -rw-r--r--. 2 boinc boinc    590101 Nov 20 12:26 input.tar.gz
[2025-11-20 12:32:19] -rw-------. 1 boinc boinc    174080 Nov 20 12:32 result.tar.gz
12:32:21 (3910103): run_atlas exited; CPU time 73.643940
12:32:21 (3910103): called boinc_finish(0)

</stderr_txt>
]]>

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