Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:18 (1218443): wrapper (7.7.26015): starting
10:49:18 (1218443): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 10:49:18] Arguments: --nthreads 4
[2025-11-23 10:49:18] Threads: 4
[2025-11-23 10:49:18] Checking for CVMFS
[2025-11-23 10:49:18] No cvmfs_config command found, will try listing directly
[2025-11-23 10:49:18] CVMFS is ok
[2025-11-23 10:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 10:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 10:49:18] Further information can be found at the LHC@home message board.
[2025-11-23 10:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 10:49:18] Checking for apptainer binary...
[2025-11-23 10:49:18] which: no apptainer in ((null))
[2025-11-23 10:49:18] apptainer is not installed, using version from CVMFS
[2025-11-23 10:49:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 10:49:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-11-23 10:49:19] apptainer works
[2025-11-23 10:49:19] Set ATHENA_PROC_NUMBER=4
[2025-11-23 10:49:19] Set ATHENA_CORE_NUMBER=4
[2025-11-23 10:49:19] Starting ATLAS job with PandaID=6893855452
[2025-11-23 10:49:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:17:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:17:08] 2025-11-24 04:01:45,903 | INFO     | monitor loop #4664: job 0:6893855452 is in state 'finished'
[2025-11-24 05:17:08] 2025-11-24 04:01:45,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:17:08] 2025-11-24 04:01:46,877 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 05:17:08] 2025-11-24 04:01:46,888 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2495.5900468750006
[2025-11-24 05:17:08] 2025-11-24 04:01:46,902 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6893855452/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:17:08] 2025-11-24 04:01:46,903 | INFO     | extracted standard info from prmon json
[2025-11-24 05:17:08] 2025-11-24 04:01:46,903 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:17:08] 2025-11-24 04:01:46,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:17:08] 2025-11-24 04:01:46,924 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:17:08] 2025-11-24 04:01:46,926 | INFO     | sum of square deviations: 384142043549.6051
[2025-11-24 05:17:08] 2025-11-24 04:01:46,951 | INFO     | sum of deviations: 1063549601807.6094
[2025-11-24 05:17:08] 2025-11-24 04:01:46,951 | INFO     | mean x: 1763924126.5288641
[2025-11-24 05:17:08] 2025-11-24 04:01:46,951 | INFO     | mean y: 2291791.7383612664
[2025-11-24 05:17:08] 2025-11-24 04:01:46,952 | INFO     | intersect: -4881372555.578399
[2025-11-24 05:17:08] 2025-11-24 04:01:46,953 | INFO     | chi2: 3.7752211190276603
[2025-11-24 05:17:08] 2025-11-24 04:01:46,955 | INFO     | sum of square deviations: 378801887762.1009
[2025-11-24 05:17:08] 2025-11-24 04:01:46,980 | INFO     | sum of deviations: 1274898427088.8315
[2025-11-24 05:17:08] 2025-11-24 04:01:46,981 | INFO     | mean x: 1763923974.028999
[2025-11-24 05:17:08] 2025-11-24 04:01:46,981 | INFO     | mean y: 2297824.4892422827
[2025-11-24 05:17:08] 2025-11-24 04:01:46,981 | INFO     | intersect: -5934377711.315325
[2025-11-24 05:17:08] 2025-11-24 04:01:46,983 | INFO     | chi2: 1.8262212766065422
[2025-11-24 05:17:08] 2025-11-24 04:01:46,983 | INFO     | current chi2=1.8262212766065422 (change=51.62611092097036 %)
[2025-11-24 05:17:08] 2025-11-24 04:01:46,984 | INFO     | sum of square deviations: 373511453837.0966
[2025-11-24 05:17:08] 2025-11-24 04:01:47,011 | INFO     | time since job start (65535s) is within the limit (172800.0s)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,014 | INFO     | sum of deviations: 1279366582505.7334
[2025-11-24 05:17:08] 2025-11-24 04:01:47,015 | INFO     | mean x: 1763923821.5291352
[2025-11-24 05:17:08] 2025-11-24 04:01:47,015 | INFO     | mean y: 2297951.492481203
[2025-11-24 05:17:08] 2025-11-24 04:01:47,015 | INFO     | intersect: -6039565472.418537
[2025-11-24 05:17:08] 2025-11-24 04:01:47,018 | INFO     | chi2: 1.7882261226362575
[2025-11-24 05:17:08] 2025-11-24 04:01:47,018 | INFO     | current chi2=1.7882261226362575 (change=2.0805339668852607 %)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,018 | INFO     | right removable region: 1063
[2025-11-24 05:17:08] 2025-11-24 04:01:47,020 | INFO     | sum of square deviations: 378801868852.10095
[2025-11-24 05:17:08] 2025-11-24 04:01:47,045 | INFO     | sum of deviations: 876233118004.2268
[2025-11-24 05:17:08] 2025-11-24 04:01:47,045 | INFO     | mean x: 1763924279.028999
[2025-11-24 05:17:08] 2025-11-24 04:01:47,046 | INFO     | mean y: 2297132.315247895
[2025-11-24 05:17:08] 2025-11-24 04:01:47,046 | INFO     | intersect: -4077959587.6968794
[2025-11-24 05:17:08] 2025-11-24 04:01:47,047 | INFO     | chi2: 2.102759997195425
[2025-11-24 05:17:08] 2025-11-24 04:01:47,047 | INFO     | current chi2=2.102759997195425 (change=44.301010963378786 %)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,049 | INFO     | sum of square deviations: 373511416017.0967
[2025-11-24 05:17:08] 2025-11-24 04:01:47,073 | INFO     | sum of deviations: 859160567211.8071
[2025-11-24 05:17:08] 2025-11-24 04:01:47,074 | INFO     | mean x: 1763924431.5291352
[2025-11-24 05:17:08] 2025-11-24 04:01:47,074 | INFO     | mean y: 2297623.9417293235
[2025-11-24 05:17:08] 2025-11-24 04:01:47,074 | INFO     | intersect: -4055126728.094589
[2025-11-24 05:17:08] 2025-11-24 04:01:47,075 | INFO     | chi2: 2.1007119719650174
[2025-11-24 05:17:08] 2025-11-24 04:01:47,075 | INFO     | current chi2=2.1007119719650174 (change=0.09739700361141475 %)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,076 | INFO     | left removable region: 20
[2025-11-24 05:17:08] 2025-11-24 04:01:47,077 | INFO     | sum of square deviations: 351829269980.0786
[2025-11-24 05:17:08] 2025-11-24 04:01:47,101 | INFO     | sum of deviations: 1060103316971.7697
[2025-11-24 05:17:08] 2025-11-24 04:01:47,102 | INFO     | mean x: 1763924401.029722
[2025-11-24 05:17:08] 2025-11-24 04:01:47,102 | INFO     | mean y: 2304169.2655800576
[2025-11-24 05:17:08] 2025-11-24 04:01:47,102 | INFO     | intersect: -5312609250.316966
[2025-11-24 05:17:08] 2025-11-24 04:01:47,103 | INFO     | chi2: 0.09511866682365419
[2025-11-24 05:17:08] 2025-11-24 04:01:47,104 | INFO     | current memory leak: 3.01 B/s (using 1043 data points, chi2=0.10)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,105 | INFO     | could have reported an average CPU frequency of 2522 MHz (40 samples)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,105 | INFO     | ..............................
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . Timing measurements:
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . get job = 0 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . initial setup = 1 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . payload setup = 6 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . stage-in = 0 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . payload execution = 65500 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . stage-out = 2 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | . log creation = 0 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,106 | INFO     | ..............................
[2025-11-24 05:17:08] 2025-11-24 04:01:47,387 | INFO     | 
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | job summary report
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | --------------------------------------------------
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | PanDA job id: 6893855452
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | task id: 47523449
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | errors: (none)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | pilot state: finished 
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | transexitcode: 0
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | exeerrorcode: 0
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | exeerrordiag: 
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | exitcode: 0
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | exitmsg: OK
[2025-11-24 05:17:08] 2025-11-24 04:01:47,388 | INFO     | cpuconsumptiontime: 257788 s
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | nevents: 1000
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | neventsw: 0
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | pid: 1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | pgrp: 1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | corecount: 4
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | event service: False
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | sizes: {0: 2298818, 5: 2299080, 11: 2299136, 65510: 2354257, 65513: 2363273, 65514: 2363329, 65518: 2363703}
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | --------------------------------------------------
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | 
[2025-11-24 05:17:08] 2025-11-24 04:01:47,389 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-24 05:17:08] 2025-11-24 04:01:47,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | job 6893855452 has completed (purged errors)
[2025-11-24 05:17:08] 2025-11-24 04:01:47,408 | INFO     | overall cleanup function is called
[2025-11-24 05:17:08] 2025-11-24 04:01:48,419 | INFO     | --- collectZombieJob: --- 10, [1232143]
[2025-11-24 05:17:08] 2025-11-24 04:01:48,420 | INFO     | zombie collector waiting for pid 1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:48,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:17:08] 2025-11-24 04:01:48,420 | INFO     | collected zombie processes
[2025-11-24 05:17:08] 2025-11-24 04:01:48,420 | INFO     | will attempt to kill all subprocesses of pid=1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:48,815 | INFO     | process IDs to be killed: [1232143] (in reverse order)
[2025-11-24 05:17:08] 2025-11-24 04:01:48,942 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:17:08] 2025-11-24 04:01:48,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:17:08] 2025-11-24 04:01:48,957 | INFO     | did not find any defunct processes belonging to 1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:48,971 | INFO     | did not find any defunct processes belonging to 1232143
[2025-11-24 05:17:08] 2025-11-24 04:01:48,973 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:17:08] 2025-11-24 04:01:48,973 | INFO     | ready for new job
[2025-11-24 05:17:08] 2025-11-24 04:01:48,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:17:08] 2025-11-24 04:01:48,980 | INFO     | ***************************************
[2025-11-24 05:17:08] 2025-11-24 04:01:48,980 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:17:08] 2025-11-24 04:01:48,980 | INFO     | ***************************************
[2025-11-24 05:17:08] 2025-11-24 04:01:48,980 | INFO     | 
[2025-11-24 05:17:08] 2025-11-24 04:01:48,984 | INFO     | architecture information:
[2025-11-24 05:17:08] 2025-11-24 04:01:48,985 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:17:08] 2025-11-24 04:01:49,003 | INFO     | cat /etc/os-release:
[2025-11-24 05:17:08] NAME="CentOS Linux"
[2025-11-24 05:17:08] VERSION="7 (Core)"
[2025-11-24 05:17:08] ID="centos"
[2025-11-24 05:17:08] ID_LIKE="rhel fedora"
[2025-11-24 05:17:08] VERSION_ID="7"
[2025-11-24 05:17:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:17:08] ANSI_COLOR="0;31"
[2025-11-24 05:17:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:17:08] HOME_URL="https://www.centos.org/"
[2025-11-24 05:17:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:17:08] 
[2025-11-24 05:17:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:17:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:17:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:17:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:17:08] 
[2025-11-24 05:17:08] 2025-11-24 04:01:49,003 | INFO     | ***************************************
[2025-11-24 05:17:08] 2025-11-24 04:01:49,506 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-24 05:17:08] 2025-11-24 04:01:49,524 | INFO     | sufficient remaining disk space (695399874560 B)
[2025-11-24 05:17:08] 2025-11-24 04:01:49,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:17:08] 2025-11-24 04:01:49,524 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:17:08] 2025-11-24 04:01:49,525 | INFO     | update_server=False
[2025-11-24 05:17:08] 2025-11-24 04:01:49,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:17:08] 2025-11-24 04:01:49,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:17:08] 2025-11-24 04:01:49,525 | INFO     | aborting loop
[2025-11-24 05:17:08] 2025-11-24 04:01:49,892 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:17:08] 2025-11-24 04:01:49,986 | INFO     | all payload control threads have been joined
[2025-11-24 05:17:08] 2025-11-24 04:01:50,296 | INFO     | all job control threads have been joined
[2025-11-24 05:17:08] 2025-11-24 04:01:50,472 | INFO     | all data control threads have been joined
[2025-11-24 05:17:08] 2025-11-24 04:01:50,529 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:50,530 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:50,609 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:50,990 | INFO     | [payload] control thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,004 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,028 | INFO     | [job] validate thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,042 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,301 | INFO     | [job] control thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,398 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,476 | INFO     | [data] control thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,499 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,651 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:51,897 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:52,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:17:08] 2025-11-24 04:01:52,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:17:08] 2025-11-24 04:01:53,208 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:01:56,940 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:17:08] 2025-11-24 04:02:19,270 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:17:08] 2025-11-24 04:02:20,640 | INFO     | PID=1222537 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 05:17:08] 2025-11-24 04:02:20,640 | INFO     | .. there are 5 such processes running
[2025-11-24 05:17:08] 2025-11-24 04:02:20,641 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:17:08] 2025-11-24 04:02:20,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:17:08] 2025-11-24 04:02:20,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:17:08] 2025-11-24 04:02:21,314 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22815090800448)>', '<ExcThread(monitor, started 22814849459968)>']
[2025-11-24 05:17:08] 2025-11-24 04:02:21,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:17:08] 2025-11-24 04:02:21,647 | INFO     | [monitor] control thread has ended
[2025-11-24 05:17:08] 2025-11-24 04:02:26,332 | INFO     | all workflow threads have been joined
[2025-11-24 05:17:08] 2025-11-24 04:02:26,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:17:08] 2025-11-24 04:02:26,333 | INFO     | traces error code: 0
[2025-11-24 05:17:08] 2025-11-24 04:02:26,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:17:08] 2025-11-24 04:02:26,498 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:17:08] 2025-11-24 04:02:26,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:17:08] 2025-11-24 04:02:26,503 [wrapper] pilotpid: 1222537
[2025-11-24 05:17:08] 2025-11-24 04:02:26,506 [wrapper] Pilot exit status: 0
[2025-11-24 05:17:08] 2025-11-24 04:02:26,519 [wrapper] pandaids: 6893855452
[2025-11-24 05:17:08] 2025-11-24 04:02:26,602 [wrapper] cleanup supervisor_pilot 2205749 1222538
[2025-11-24 05:17:08] 2025-11-24 04:02:26,605 [wrapper] Test setup, not cleaning
[2025-11-24 05:17:08] 2025-11-24 04:02:26,609 [wrapper] apfmon messages muted
[2025-11-24 05:17:08] 2025-11-24 04:02:26,612 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:17:08] 2025-11-24 04:02:26,615 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:17:08]  *** Error codes and diagnostics ***
[2025-11-24 05:17:08]     "exeErrorCode": 0,
[2025-11-24 05:17:08]     "exeErrorDiag": "",
[2025-11-24 05:17:08]     "pilotErrorCode": 0,
[2025-11-24 05:17:08]     "pilotErrorDiag": "",
[2025-11-24 05:17:08]  *** Listing of results directory ***
[2025-11-24 05:17:08] total 1317948
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:36 queuedata.json
[2025-11-24 05:17:08] -rwx------ 1 boinc boinc     36292 Nov 20 13:37 runpilot2-wrapper.sh
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc       100 Nov 23 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:17:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 10:49 run_atlas
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc       105 Nov 23 10:49 job.xml
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc 410631725 Nov 23 10:49 EVNT.47493127._000444.pool.root.1
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc      6635 Nov 23 10:49 init_data.xml
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc     15847 Nov 23 10:49 start_atlas.sh
[2025-11-24 05:17:08] drwxrwx--x 2 boinc boinc      4096 Nov 23 10:49 shared
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc    590105 Nov 23 10:49 input.tar.gz
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc         0 Nov 23 10:49 boinc_lockfile
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc      2786 Nov 23 10:49 pandaJob.out
[2025-11-24 05:17:08] -rw------- 1 boinc boinc    989784 Nov 23 10:49 agis_schedconf.cvmfs.json
[2025-11-24 05:17:08] drwx------ 5 boinc boinc      4096 Nov 23 10:49 pilot3
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc       530 Nov 24 04:54 boinc_task_state.xml
[2025-11-24 05:17:08] -rw------- 1 boinc boinc 913149860 Nov 24 05:00 HITS.47523449._004433.pool.root.1
[2025-11-24 05:17:08] -rw------- 1 boinc boinc      1043 Nov 24 05:01 memory_monitor_summary.json
[2025-11-24 05:17:08] -rw------- 1 boinc boinc   1526164 Nov 24 05:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:17:08] -rw------- 1 boinc boinc   1791973 Nov 24 05:01 log.47523449._004433.job.log.tgz.1
[2025-11-24 05:17:08] -rw------- 1 boinc boinc      8630 Nov 24 05:01 heartbeat.json
[2025-11-24 05:17:08] -rw------- 1 boinc boinc        95 Nov 24 05:02 pilot_heartbeat.json
[2025-11-24 05:17:08] -rw------- 1 boinc boinc      4833 Nov 24 05:02 pilotlog.txt
[2025-11-24 05:17:08] -rw------- 1 boinc boinc   9150146 Nov 24 05:02 log.47523449._004433.job.log.1
[2025-11-24 05:17:08] -rw------- 1 boinc boinc       353 Nov 24 05:02 output.list
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc       620 Nov 24 05:02 runtime_log
[2025-11-24 05:17:08] -rw------- 1 boinc boinc  10956800 Nov 24 05:02 result.tar.gz
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc      9206 Nov 24 05:02 runtime_log.err
[2025-11-24 05:17:08] -rw------- 1 boinc boinc       670 Nov 24 05:02 KxSMDmU5Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3cGKDmMRBqWo.diag
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc        28 Nov 24 05:17 wrapper_checkpoint.txt
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc      8192 Nov 24 05:17 boinc_mmap_file
[2025-11-24 05:17:08] -rw-r--r-- 1 boinc boinc     21117 Nov 24 05:17 stderr.txt
[2025-11-24 05:17:08] HITS file was successfully produced:
[2025-11-24 05:17:08] -rw------- 1 boinc boinc 913149860 Nov 24 05:00 shared/HITS.pool.root.1
[2025-11-24 05:17:08]  *** Contents of shared directory: ***
[2025-11-24 05:17:08] total 1304060
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc 410631725 Nov 23 10:49 ATLAS.root_0
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc     15847 Nov 23 10:49 start_atlas.sh
[2025-11-24 05:17:08] -rw-r--r-- 2 boinc boinc    590105 Nov 23 10:49 input.tar.gz
[2025-11-24 05:17:08] -rw------- 1 boinc boinc 913149860 Nov 24 05:00 HITS.pool.root.1
[2025-11-24 05:17:08] -rw------- 1 boinc boinc  10956800 Nov 24 05:02 result.tar.gz
05:17:09 (1218443): run_atlas exited; CPU time 260333.842552
05:17:09 (1218443): called boinc_finish(0)

</stderr_txt>
]]>

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