Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:24:43 (2163808): wrapper (7.7.26015): starting
21:24:43 (2163808): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 21:24:43] Arguments: --nthreads 3
[2025-11-20 21:24:43] Threads: 3
[2025-11-20 21:24:43] Checking for CVMFS
[2025-11-20 21:24:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:24:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:24:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:24:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:24:44] 2.9.2.0 16720 451 67520 153088 0 88 34405804 36864000 0 130560 0 6452149 99.999 9606 8485 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 21:24:44] CVMFS is ok
[2025-11-20 21:24:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:24:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:24:44] Further information can be found at the LHC@home message board.
[2025-11-20 21:24:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:24:44] Checking for apptainer binary...
[2025-11-20 21:24:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:24:44] Running /usr/bin/apptainer --version
[2025-11-20 21:24:44] apptainer version 1.4.1-1.1
[2025-11-20 21:24:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:24:44] thA335
[2025-11-20 21:24:44] apptainer works
[2025-11-20 21:24:44] Set ATHENA_PROC_NUMBER=3
[2025-11-20 21:24:44] Set ATHENA_CORE_NUMBER=3
[2025-11-20 21:24:44] Starting ATLAS job with PandaID=6893855187
[2025-11-20 21:24:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:29:00]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:29:00] 2025-11-20 20:28:09,023 | INFO     | update_server=False
[2025-11-20 21:29:00] 2025-11-20 20:28:09,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:29:00] 2025-11-20 20:28:09,023 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:29:00] 2025-11-20 20:28:09,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:29:00] 2025-11-20 20:28:09,151 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 21:29:00] 2025-11-20 20:28:09,151 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 21:29:00] 2025-11-20 20:28:09,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:29:00] 2025-11-20 20:28:09,151 | INFO     | will abort loop
[2025-11-20 21:29:00] 2025-11-20 20:28:09,393 | INFO     | all data control threads have been joined
[2025-11-20 21:29:00] 2025-11-20 20:28:09,758 | INFO     | all payload control threads have been joined
[2025-11-20 21:29:00] 2025-11-20 20:28:10,024 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,028 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,157 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,303 | INFO     | all job control threads have been joined
[2025-11-20 21:29:00] 2025-11-20 20:28:10,317 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,399 | INFO     | [data] control thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,719 | INFO     | [job] validate thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,763 | INFO     | [payload] control thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,805 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,857 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:10,870 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:11,029 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:11,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:11,247 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:11,309 | INFO     | [job] control thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:11,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:29:00] 2025-11-20 20:28:11,480 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:15,380 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:29:00] 2025-11-20 20:28:38,835 | INFO     | PID=2167531 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 21:29:00] 2025-11-20 20:28:38,835 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:29:00] 2025-11-20 20:28:38,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:29:00] 2025-11-20 20:28:38,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:29:00] 2025-11-20 20:28:53,944 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:29:00] 2025-11-20 20:28:55,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187694729024)>', '<ExcThread(monitor, started 140186893661952)>']
[2025-11-20 21:29:00] 2025-11-20 20:28:55,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:29:00] 2025-11-20 20:28:55,924 | INFO     | [monitor] control thread has ended
[2025-11-20 21:29:00] 2025-11-20 20:29:00,265 | INFO     | all workflow threads have been joined
[2025-11-20 21:29:00] 2025-11-20 20:29:00,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:29:00] 2025-11-20 20:29:00,266 | INFO     | traces error code: 0
[2025-11-20 21:29:00] 2025-11-20 20:29:00,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:29:00] 2025-11-20 20:29:00,312 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:29:00] 2025-11-20 20:29:00,315 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:29:00] 2025-11-20 20:29:00,318 [wrapper] pilotpid: 2167531
[2025-11-20 21:29:00] 2025-11-20 20:29:00,321 [wrapper] Pilot exit status: 0
[2025-11-20 21:29:00] 2025-11-20 20:29:00,328 [wrapper] pandaids: 6893855187
[2025-11-20 21:29:00] 2025-11-20 20:29:00,344 [wrapper] cleanup supervisor_pilot 2167537 2167532
[2025-11-20 21:29:00] 2025-11-20 20:29:00,346 [wrapper] Test setup, not cleaning
[2025-11-20 21:29:00] 2025-11-20 20:29:00,349 [wrapper] apfmon messages muted
[2025-11-20 21:29:00] 2025-11-20 20:29:00,352 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:29:00] 2025-11-20 20:29:00,354 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:29:00]  *** Error codes and diagnostics ***
[2025-11-20 21:29:00]     "exeErrorCode": 65,
[2025-11-20 21:29:00]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 21:29:00]     "pilotErrorCode": 1305,
[2025-11-20 21:29:00]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 21:29:00]  *** Listing of results directory ***
[2025-11-20 21:29:00] total 404260
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:29 queuedata.json
[2025-11-20 21:29:00] -rwx------ 1 boinc boinc     36292 Nov 20 13:32 runpilot2-wrapper.sh
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc       100 Nov 20 21:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:29:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 21:24 run_atlas
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc       105 Nov 20 21:24 job.xml
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc 409761289 Nov 20 21:24 EVNT.47493127._000437.pool.root.1
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc    590102 Nov 20 21:24 input.tar.gz
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc     15847 Nov 20 21:24 start_atlas.sh
[2025-11-20 21:29:00] drwxrwx--x 2 boinc boinc      4096 Nov 20 21:24 shared
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:24 boinc_setup_complete
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      6194 Nov 20 21:24 init_data.xml
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:24 boinc_lockfile
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      2785 Nov 20 21:24 pandaJob.out
[2025-11-20 21:29:00] -rw------- 1 boinc boinc    989440 Nov 20 21:24 agis_schedconf.cvmfs.json
[2025-11-20 21:29:00] -rw------- 1 boinc boinc   1526164 Nov 20 21:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:29:00] drwx------ 5 boinc boinc      4096 Nov 20 21:24 pilot3
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc       523 Nov 20 21:25 boinc_task_state.xml
[2025-11-20 21:29:00] -rw------- 1 boinc boinc       946 Nov 20 21:25 memory_monitor_summary.json
[2025-11-20 21:29:00] -rw------- 1 boinc boinc     55832 Nov 20 21:26 log.47523449._004370.job.log.tgz.1
[2025-11-20 21:29:00] -rw------- 1 boinc boinc        95 Nov 20 21:27 pilot_heartbeat.json
[2025-11-20 21:29:00] -rw------- 1 boinc boinc      8392 Nov 20 21:28 heartbeat.json
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      8192 Nov 20 21:28 boinc_mmap_file
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc        23 Nov 20 21:28 wrapper_checkpoint.txt
[2025-11-20 21:29:00] -rw------- 1 boinc boinc      4938 Nov 20 21:29 pilotlog.txt
[2025-11-20 21:29:00] -rw------- 1 boinc boinc     93680 Nov 20 21:29 log.47523449._004370.job.log.1
[2025-11-20 21:29:00] -rw------- 1 boinc boinc       186 Nov 20 21:29 output.list
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc       620 Nov 20 21:29 runtime_log
[2025-11-20 21:29:00] -rw------- 1 boinc boinc    174080 Nov 20 21:29 result.tar.gz
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      8744 Nov 20 21:29 runtime_log.err
[2025-11-20 21:29:00] -rw------- 1 boinc boinc       649 Nov 20 21:29 SwlNDmd0Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEoHKDmcA9LNm.diag
[2025-11-20 21:29:00] -rw-r--r-- 1 boinc boinc      8016 Nov 20 21:29 stderr.txt
[2025-11-20 21:29:00] No HITS result produced
[2025-11-20 21:29:00]  *** Contents of shared directory: ***
[2025-11-20 21:29:00] total 400932
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc 409761289 Nov 20 21:24 ATLAS.root_0
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc    590102 Nov 20 21:24 input.tar.gz
[2025-11-20 21:29:00] -rw-r--r-- 2 boinc boinc     15847 Nov 20 21:24 start_atlas.sh
[2025-11-20 21:29:00] -rw------- 1 boinc boinc    174080 Nov 20 21:29 result.tar.gz
21:29:02 (2163808): run_atlas exited; CPU time 31.099521
21:29:02 (2163808): called boinc_finish(0)

</stderr_txt>
]]>

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