Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:02:49 (2059663): wrapper (7.7.26015): starting
21:02:49 (2059663): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 21:02:49] Arguments: --nthreads 3
[2025-11-20 21:02:49] Threads: 3
[2025-11-20 21:02:49] Checking for CVMFS
[2025-11-20 21:02:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:02:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:02:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:02:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:02:49] 2.9.2.0 16720 429 67768 153088 2 88 34405804 36864000 0 130560 0 6138936 99.999 9603 8574 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 21:02:49] CVMFS is ok
[2025-11-20 21:02:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:02:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:02:49] Further information can be found at the LHC@home message board.
[2025-11-20 21:02:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:02:49] Checking for apptainer binary...
[2025-11-20 21:02:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:02:49] Running /usr/bin/apptainer --version
[2025-11-20 21:02:49] apptainer version 1.4.1-1.1
[2025-11-20 21:02:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:02:49] thA335
[2025-11-20 21:02:49] apptainer works
[2025-11-20 21:02:49] Set ATHENA_PROC_NUMBER=3
[2025-11-20 21:02:49] Set ATHENA_CORE_NUMBER=3
[2025-11-20 21:02:49] Starting ATLAS job with PandaID=6893854913
[2025-11-20 21:02:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:07:08]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:07:08] 2025-11-20 20:06:18,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:07:08] 2025-11-20 20:06:18,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:07:08] 2025-11-20 20:06:19,218 | INFO     | all data control threads have been joined
[2025-11-20 21:07:08] 2025-11-20 20:06:19,228 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 21:07:08] 2025-11-20 20:06:19,228 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 21:07:08] 2025-11-20 20:06:19,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:07:08] 2025-11-20 20:06:19,230 | INFO     | will abort loop
[2025-11-20 21:07:08] 2025-11-20 20:06:19,628 | INFO     | all job control threads have been joined
[2025-11-20 21:07:08] 2025-11-20 20:06:19,971 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:19,972 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,173 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,224 | INFO     | [data] control thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,235 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,276 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,374 | INFO     | all payload control threads have been joined
[2025-11-20 21:07:08] 2025-11-20 20:06:20,634 | INFO     | [job] control thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:20,972 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,033 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,144 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,301 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,311 | INFO     | [job] validate thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,375 | INFO     | [payload] control thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,395 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:21,444 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:22,988 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:07:08] 2025-11-20 20:06:48,559 | INFO     | PID=2063404 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 21:07:08] 2025-11-20 20:06:48,559 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:07:08] 2025-11-20 20:06:48,560 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:07:08] 2025-11-20 20:06:48,560 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:07:08] 2025-11-20 20:07:01,645 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:07:08] 2025-11-20 20:07:03,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140024213509952)>', '<ExcThread(monitor, started 140023584257792)>']
[2025-11-20 21:07:08] 2025-11-20 20:07:03,640 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:07:08] 2025-11-20 20:07:03,640 | INFO     | [monitor] control thread has ended
[2025-11-20 21:07:08] 2025-11-20 20:07:08,193 | INFO     | all workflow threads have been joined
[2025-11-20 21:07:08] 2025-11-20 20:07:08,193 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:07:08] 2025-11-20 20:07:08,194 | INFO     | traces error code: 0
[2025-11-20 21:07:08] 2025-11-20 20:07:08,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:07:08] 2025-11-20 20:07:08,241 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:07:08] 2025-11-20 20:07:08,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:07:08] 2025-11-20 20:07:08,247 [wrapper] pilotpid: 2063404
[2025-11-20 21:07:08] 2025-11-20 20:07:08,250 [wrapper] Pilot exit status: 0
[2025-11-20 21:07:08] 2025-11-20 20:07:08,258 [wrapper] pandaids: 6893854913
[2025-11-20 21:07:08] 2025-11-20 20:07:08,275 [wrapper] cleanup supervisor_pilot 2063410 2063405
[2025-11-20 21:07:08] 2025-11-20 20:07:08,278 [wrapper] Test setup, not cleaning
[2025-11-20 21:07:08] 2025-11-20 20:07:08,280 [wrapper] apfmon messages muted
[2025-11-20 21:07:08] 2025-11-20 20:07:08,283 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:07:08] 2025-11-20 20:07:08,286 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:07:08]  *** Error codes and diagnostics ***
[2025-11-20 21:07:08]     "exeErrorCode": 65,
[2025-11-20 21:07:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 21:07:08]     "pilotErrorCode": 1305,
[2025-11-20 21:07:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 21:07:08]  *** Listing of results directory ***
[2025-11-20 21:07:08] total 404880
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:26 queuedata.json
[2025-11-20 21:07:08] -rwx------ 1 boinc boinc     36292 Nov 20 13:28 runpilot2-wrapper.sh
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc       100 Nov 20 21:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:07:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 21:02 run_atlas
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc       105 Nov 20 21:02 job.xml
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc 410391263 Nov 20 21:02 EVNT.47493127._000431.pool.root.1
[2025-11-20 21:07:08] drwxrwx--x 2 boinc boinc      4096 Nov 20 21:02 shared
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc    590098 Nov 20 21:02 input.tar.gz
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc     15847 Nov 20 21:02 start_atlas.sh
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:02 boinc_setup_complete
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      6194 Nov 20 21:02 init_data.xml
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:02 boinc_lockfile
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      2785 Nov 20 21:02 pandaJob.out
[2025-11-20 21:07:08] -rw------- 1 boinc boinc    989440 Nov 20 21:03 agis_schedconf.cvmfs.json
[2025-11-20 21:07:08] -rw------- 1 boinc boinc   1526164 Nov 20 21:03 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:07:08] drwx------ 5 boinc boinc      4096 Nov 20 21:03 pilot3
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc       523 Nov 20 21:03 boinc_task_state.xml
[2025-11-20 21:07:08] -rw------- 1 boinc boinc       967 Nov 20 21:04 memory_monitor_summary.json
[2025-11-20 21:07:08] -rw------- 1 boinc boinc     55799 Nov 20 21:04 log.47523449._004310.job.log.tgz.1
[2025-11-20 21:07:08] -rw------- 1 boinc boinc        95 Nov 20 21:06 pilot_heartbeat.json
[2025-11-20 21:07:08] -rw------- 1 boinc boinc      8412 Nov 20 21:06 heartbeat.json
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      8192 Nov 20 21:07 boinc_mmap_file
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc        23 Nov 20 21:07 wrapper_checkpoint.txt
[2025-11-20 21:07:08] -rw------- 1 boinc boinc      4938 Nov 20 21:07 pilotlog.txt
[2025-11-20 21:07:08] -rw------- 1 boinc boinc     93873 Nov 20 21:07 log.47523449._004310.job.log.1
[2025-11-20 21:07:08] -rw------- 1 boinc boinc       186 Nov 20 21:07 output.list
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc       620 Nov 20 21:07 runtime_log
[2025-11-20 21:07:08] -rw------- 1 boinc boinc    174080 Nov 20 21:07 result.tar.gz
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      8744 Nov 20 21:07 runtime_log.err
[2025-11-20 21:07:08] -rw------- 1 boinc boinc       649 Nov 20 21:07 ahOKDmUxIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgcGKDmyMQ8bn.diag
[2025-11-20 21:07:08] -rw-r--r-- 1 boinc boinc      7667 Nov 20 21:07 stderr.txt
[2025-11-20 21:07:08] No HITS result produced
[2025-11-20 21:07:08]  *** Contents of shared directory: ***
[2025-11-20 21:07:08] total 401548
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc 410391263 Nov 20 21:02 ATLAS.root_0
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc    590098 Nov 20 21:02 input.tar.gz
[2025-11-20 21:07:08] -rw-r--r-- 2 boinc boinc     15847 Nov 20 21:02 start_atlas.sh
[2025-11-20 21:07:08] -rw------- 1 boinc boinc    174080 Nov 20 21:07 result.tar.gz
21:07:09 (2059663): run_atlas exited; CPU time 31.780369
21:07:09 (2059663): called boinc_finish(0)

</stderr_txt>
]]>

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