Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:07:24 (1586824): wrapper (7.7.26015): starting
20:07:24 (1586824): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 20:07:24] Arguments: --nthreads 4
[2025-11-23 20:07:24] Threads: 4
[2025-11-23 20:07:24] Checking for CVMFS
[2025-11-23 20:07:24] No cvmfs_config command found, will try listing directly
[2025-11-23 20:07:24] CVMFS is ok
[2025-11-23 20:07:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:07:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:07:24] Further information can be found at the LHC@home message board.
[2025-11-23 20:07:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:07:24] Checking for apptainer binary...
[2025-11-23 20:07:24] which: no apptainer in ((null))
[2025-11-23 20:07:24] apptainer is not installed, using version from CVMFS
[2025-11-23 20:07:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:07:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-23 20:07:24] apptainer works
[2025-11-23 20:07:24] Set ATHENA_PROC_NUMBER=4
[2025-11-23 20:07:24] Set ATHENA_CORE_NUMBER=4
[2025-11-23 20:07:25] Starting ATLAS job with PandaID=6893855476
[2025-11-23 20:07:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:32:59]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:32:59] 2025-11-24 11:31:36,045 | INFO     | time since job start (59036s) is within the limit (172800.0s)
[2025-11-24 12:32:59] 2025-11-24 11:31:36,522 | INFO     | monitor loop #3947: job 0:6893855476 is in state 'finished'
[2025-11-24 12:32:59] 2025-11-24 11:31:36,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,055 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 12:32:59] 2025-11-24 11:31:37,078 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2670.6663593750004
[2025-11-24 12:32:59] 2025-11-24 11:31:37,103 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893855476/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,104 | INFO     | extracted standard info from prmon json
[2025-11-24 12:32:59] 2025-11-24 11:31:37,104 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:32:59] 2025-11-24 11:31:37,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:32:59] 2025-11-24 11:31:37,121 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:32:59] 2025-11-24 11:31:37,122 | INFO     | sum of square deviations: 280387404659.1882
[2025-11-24 12:32:59] 2025-11-24 11:31:37,144 | INFO     | sum of deviations: 829737798056.2203
[2025-11-24 12:32:59] 2025-11-24 11:31:37,144 | INFO     | mean x: 1763954360.0289555
[2025-11-24 12:32:59] 2025-11-24 11:31:37,144 | INFO     | mean y: 2275634.0992761115
[2025-11-24 12:32:59] 2025-11-24 11:31:37,144 | INFO     | intersect: -5217714929.817564
[2025-11-24 12:32:59] 2025-11-24 11:31:37,145 | INFO     | chi2: 3.4172141991669935
[2025-11-24 12:32:59] 2025-11-24 11:31:37,146 | INFO     | sum of square deviations: 276060532071.689
[2025-11-24 12:32:59] 2025-11-24 11:31:37,168 | INFO     | sum of deviations: 986644212541.2897
[2025-11-24 12:32:59] 2025-11-24 11:31:37,168 | INFO     | mean x: 1763954207.5291061
[2025-11-24 12:32:59] 2025-11-24 11:31:37,168 | INFO     | mean y: 2281157.7931392933
[2025-11-24 12:32:59] 2025-11-24 11:31:37,169 | INFO     | intersect: -6302115914.058093
[2025-11-24 12:32:59] 2025-11-24 11:31:37,170 | INFO     | chi2: 1.950022211440183
[2025-11-24 12:32:59] 2025-11-24 11:31:37,170 | INFO     | current chi2=1.950022211440183 (change=42.935323986552106 %)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,171 | INFO     | sum of square deviations: 271778404509.18088
[2025-11-24 12:32:59] 2025-11-24 11:31:37,193 | INFO     | sum of deviations: 972647491170.2573
[2025-11-24 12:32:59] 2025-11-24 11:31:37,193 | INFO     | mean x: 1763954055.029258
[2025-11-24 12:32:59] 2025-11-24 11:31:37,193 | INFO     | mean y: 2280659.3479623822
[2025-11-24 12:32:59] 2025-11-24 11:31:37,194 | INFO     | intersect: -6310603137.516965
[2025-11-24 12:32:59] 2025-11-24 11:31:37,195 | INFO     | chi2: 1.950059218010608
[2025-11-24 12:32:59] 2025-11-24 11:31:37,195 | INFO     | current chi2=1.950059218010608 (change=-0.0018977512260029343 %)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,195 | INFO     | right removable region: 956
[2025-11-24 12:32:59] 2025-11-24 11:31:37,196 | INFO     | sum of square deviations: 276060514991.689
[2025-11-24 12:32:59] 2025-11-24 11:31:37,218 | INFO     | sum of deviations: 656949168860.114
[2025-11-24 12:32:59] 2025-11-24 11:31:37,218 | INFO     | mean x: 1763954512.5291061
[2025-11-24 12:32:59] 2025-11-24 11:31:37,218 | INFO     | mean y: 2281712.5852390854
[2025-11-24 12:32:59] 2025-11-24 11:31:37,218 | INFO     | intersect: -4195451711.725482
[2025-11-24 12:32:59] 2025-11-24 11:31:37,219 | INFO     | chi2: 1.5785868740906719
[2025-11-24 12:32:59] 2025-11-24 11:31:37,219 | INFO     | current chi2=1.5785868740906719 (change=53.804860272572895 %)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,220 | INFO     | sum of square deviations: 271778429152.23837
[2025-11-24 12:32:59] 2025-11-24 11:31:37,242 | INFO     | sum of deviations: 627788047478.3917
[2025-11-24 12:32:59] 2025-11-24 11:31:37,243 | INFO     | mean x: 1763954665.0282133
[2025-11-24 12:32:59] 2025-11-24 11:31:37,243 | INFO     | mean y: 2282751.3928944618
[2025-11-24 12:32:59] 2025-11-24 11:31:37,243 | INFO     | intersect: -4072321912.607689
[2025-11-24 12:32:59] 2025-11-24 11:31:37,244 | INFO     | chi2: 1.561342508754874
[2025-11-24 12:32:59] 2025-11-24 11:31:37,244 | INFO     | current chi2=1.561342508754874 (change=1.0923925454360126 %)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,244 | INFO     | left removable region: 20
[2025-11-24 12:32:59] 2025-11-24 11:31:37,245 | INFO     | sum of square deviations: 254276826371.22122
[2025-11-24 12:32:59] 2025-11-24 11:31:37,266 | INFO     | sum of deviations: 720685931879.3187
[2025-11-24 12:32:59] 2025-11-24 11:31:37,266 | INFO     | mean x: 1763954634.5288463
[2025-11-24 12:32:59] 2025-11-24 11:31:37,267 | INFO     | mean y: 2289619.043803419
[2025-11-24 12:32:59] 2025-11-24 11:31:37,267 | INFO     | intersect: -4997211545.5741
[2025-11-24 12:32:59] 2025-11-24 11:31:37,268 | INFO     | chi2: 0.07268501920682054
[2025-11-24 12:32:59] 2025-11-24 11:31:37,268 | INFO     | current memory leak: 2.83 B/s (using 936 data points, chi2=0.07)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,269 | INFO     | could have reported an average CPU frequency of 2662 MHz (36 samples)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,269 | INFO     | ..............................
[2025-11-24 12:32:59] 2025-11-24 11:31:37,269 | INFO     | . Timing measurements:
[2025-11-24 12:32:59] 2025-11-24 11:31:37,269 | INFO     | . get job = 0 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,270 | INFO     | . initial setup = 1 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,270 | INFO     | . payload setup = 9 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,270 | INFO     | . stage-in = 0 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,270 | INFO     | . payload execution = 58993 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,270 | INFO     | . stage-out = 2 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,271 | INFO     | . log creation = 0 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,271 | INFO     | ..............................
[2025-11-24 12:32:59] 2025-11-24 11:31:37,470 | INFO     | 
[2025-11-24 12:32:59] 2025-11-24 11:31:37,470 | INFO     | job summary report
[2025-11-24 12:32:59] 2025-11-24 11:31:37,470 | INFO     | --------------------------------------------------
[2025-11-24 12:32:59] 2025-11-24 11:31:37,470 | INFO     | PanDA job id: 6893855476
[2025-11-24 12:32:59] 2025-11-24 11:31:37,470 | INFO     | task id: 47523449
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | errors: (none)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | pilot state: finished 
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | transexitcode: 0
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | exeerrorcode: 0
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | exeerrordiag: 
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | exitcode: 0
[2025-11-24 12:32:59] 2025-11-24 11:31:37,471 | INFO     | exitmsg: OK
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | cpuconsumptiontime: 232234 s
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | nevents: 1000
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | neventsw: 0
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | pid: 1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | pgrp: 1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | corecount: 4
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | event service: False
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | sizes: {0: 2297979, 1: 2298847, 8: 2299109, 12: 2299137, 59007: 2353925, 59010: 2363734, 59012: 2363918, 59020: 2364164}
[2025-11-24 12:32:59] 2025-11-24 11:31:37,472 | INFO     | --------------------------------------------------
[2025-11-24 12:32:59] 2025-11-24 11:31:37,473 | INFO     | 
[2025-11-24 12:32:59] 2025-11-24 11:31:37,473 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-24 12:32:59] 2025-11-24 11:31:37,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:32:59] 2025-11-24 11:31:37,509 | INFO     | job 6893855476 has completed (purged errors)
[2025-11-24 12:32:59] 2025-11-24 11:31:37,509 | INFO     | overall cleanup function is called
[2025-11-24 12:32:59] 2025-11-24 11:31:38,529 | INFO     | --- collectZombieJob: --- 10, [1598271]
[2025-11-24 12:32:59] 2025-11-24 11:31:38,529 | INFO     | zombie collector waiting for pid 1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:38,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:32:59] 2025-11-24 11:31:38,530 | INFO     | collected zombie processes
[2025-11-24 12:32:59] 2025-11-24 11:31:38,530 | INFO     | will attempt to kill all subprocesses of pid=1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:39,374 | INFO     | process IDs to be killed: [1598271] (in reverse order)
[2025-11-24 12:32:59] 2025-11-24 11:31:39,634 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:32:59] 2025-11-24 11:31:39,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:32:59] 2025-11-24 11:31:39,667 | INFO     | did not find any defunct processes belonging to 1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:39,701 | INFO     | did not find any defunct processes belonging to 1598271
[2025-11-24 12:32:59] 2025-11-24 11:31:39,702 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:32:59] 2025-11-24 11:31:39,703 | INFO     | ready for new job
[2025-11-24 12:32:59] 2025-11-24 11:31:39,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:32:59] 2025-11-24 11:31:39,710 | INFO     | ***************************************
[2025-11-24 12:32:59] 2025-11-24 11:31:39,710 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:32:59] 2025-11-24 11:31:39,710 | INFO     | ***************************************
[2025-11-24 12:32:59] 2025-11-24 11:31:39,710 | INFO     | 
[2025-11-24 12:32:59] 2025-11-24 11:31:39,719 | INFO     | architecture information:
[2025-11-24 12:32:59] 2025-11-24 11:31:39,720 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:32:59] 2025-11-24 11:31:39,743 | INFO     | cat /etc/os-release:
[2025-11-24 12:32:59] NAME="CentOS Linux"
[2025-11-24 12:32:59] VERSION="7 (Core)"
[2025-11-24 12:32:59] ID="centos"
[2025-11-24 12:32:59] ID_LIKE="rhel fedora"
[2025-11-24 12:32:59] VERSION_ID="7"
[2025-11-24 12:32:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:32:59] ANSI_COLOR="0;31"
[2025-11-24 12:32:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:32:59] HOME_URL="https://www.centos.org/"
[2025-11-24 12:32:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:32:59] 
[2025-11-24 12:32:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:32:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:32:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:32:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:32:59] 
[2025-11-24 12:32:59] 2025-11-24 11:31:39,743 | INFO     | ***************************************
[2025-11-24 12:32:59] 2025-11-24 11:31:40,246 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-24 12:32:59] 2025-11-24 11:31:40,273 | INFO     | sufficient remaining disk space (3286212018176 B)
[2025-11-24 12:32:59] 2025-11-24 11:31:40,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:32:59] 2025-11-24 11:31:40,273 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:32:59] 2025-11-24 11:31:40,273 | INFO     | update_server=False
[2025-11-24 12:32:59] 2025-11-24 11:31:40,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:32:59] 2025-11-24 11:31:40,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:32:59] 2025-11-24 11:31:40,275 | INFO     | aborting loop
[2025-11-24 12:32:59] 2025-11-24 11:31:40,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:32:59] 2025-11-24 11:31:40,761 | INFO     | all data control threads have been joined
[2025-11-24 12:32:59] 2025-11-24 11:31:40,843 | INFO     | all payload control threads have been joined
[2025-11-24 12:32:59] 2025-11-24 11:31:41,279 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,280 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:32:59] 2025-11-24 11:31:41,587 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,662 | INFO     | all job control threads have been joined
[2025-11-24 12:32:59] 2025-11-24 11:31:41,767 | INFO     | [data] control thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,848 | INFO     | [payload] control thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,900 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:41,980 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,097 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,280 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:32:59] 2025-11-24 11:31:42,650 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,667 | INFO     | [job] control thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,692 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:42,732 | INFO     | [job] validate thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:43,305 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:43,392 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:31:44,280 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:32:59] 2025-11-24 11:32:10,173 | INFO     | PID=1590889 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 12:32:59] 2025-11-24 11:32:10,174 | INFO     | .. there are 9 such processes running
[2025-11-24 12:32:59] 2025-11-24 11:32:10,175 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:32:59] 2025-11-24 11:32:10,175 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:32:59] 2025-11-24 11:32:10,175 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:32:59] 2025-11-24 11:32:18,086 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:32:59] 2025-11-24 11:32:18,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23075307321152)>', '<ExcThread(monitor, started 23075051468544)>']
[2025-11-24 12:32:59] 2025-11-24 11:32:19,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:32:59] 2025-11-24 11:32:19,220 | INFO     | [monitor] control thread has ended
[2025-11-24 12:32:59] 2025-11-24 11:32:23,912 | INFO     | all workflow threads have been joined
[2025-11-24 12:32:59] 2025-11-24 11:32:23,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:32:59] 2025-11-24 11:32:23,913 | INFO     | traces error code: 0
[2025-11-24 12:32:59] 2025-11-24 11:32:23,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:32:59] 2025-11-24 11:32:24,092 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:32:59] 2025-11-24 11:32:24,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:32:59] 2025-11-24 11:32:24,100 [wrapper] pilotpid: 1590889
[2025-11-24 12:32:59] 2025-11-24 11:32:24,104 [wrapper] Pilot exit status: 0
[2025-11-24 12:32:59] 2025-11-24 11:32:24,119 [wrapper] pandaids: 6893855476
[2025-11-24 12:32:59] 2025-11-24 11:32:24,309 [wrapper] cleanup supervisor_pilot 3239690 1590890
[2025-11-24 12:32:59] 2025-11-24 11:32:24,312 [wrapper] Test setup, not cleaning
[2025-11-24 12:32:59] 2025-11-24 11:32:24,315 [wrapper] apfmon messages muted
[2025-11-24 12:32:59] 2025-11-24 11:32:24,318 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:32:59] 2025-11-24 11:32:24,322 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:32:59]  *** Error codes and diagnostics ***
[2025-11-24 12:32:59]     "exeErrorCode": 0,
[2025-11-24 12:32:59]     "exeErrorDiag": "",
[2025-11-24 12:32:59]     "pilotErrorCode": 0,
[2025-11-24 12:32:59]     "pilotErrorDiag": "",
[2025-11-24 12:32:59]  *** Listing of results directory ***
[2025-11-24 12:32:59] total 1322464
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:36 queuedata.json
[2025-11-24 12:32:59] -rwx------ 1 boinc boinc     36292 Nov 20 13:37 runpilot2-wrapper.sh
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc       100 Nov 23 20:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:32:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 20:07 run_atlas
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc       105 Nov 23 20:07 job.xml
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc 408705388 Nov 23 20:07 EVNT.47493127._000446.pool.root.1
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc      6688 Nov 23 20:07 init_data.xml
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc     15847 Nov 23 20:07 start_atlas.sh
[2025-11-24 12:32:59] drwxrwx--x 2 boinc boinc      4096 Nov 23 20:07 shared
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc    590103 Nov 23 20:07 input.tar.gz
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc         0 Nov 23 20:07 boinc_lockfile
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc      2786 Nov 23 20:07 pandaJob.out
[2025-11-24 12:32:59] -rw------- 1 boinc boinc    989786 Nov 23 20:07 agis_schedconf.cvmfs.json
[2025-11-24 12:32:59] drwx------ 5 boinc boinc      4096 Nov 23 20:07 pilot3
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc       532 Nov 24 12:25 boinc_task_state.xml
[2025-11-24 12:32:59] -rw------- 1 boinc boinc 921965334 Nov 24 12:30 HITS.47523449._004457.pool.root.1
[2025-11-24 12:32:59] -rw------- 1 boinc boinc      1037 Nov 24 12:31 memory_monitor_summary.json
[2025-11-24 12:32:59] -rw------- 1 boinc boinc   1516227 Nov 24 12:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:32:59] -rw------- 1 boinc boinc   1702058 Nov 24 12:31 log.47523449._004457.job.log.tgz.1
[2025-11-24 12:32:59] -rw------- 1 boinc boinc      8597 Nov 24 12:31 heartbeat.json
[2025-11-24 12:32:59] -rw------- 1 boinc boinc        95 Nov 24 12:32 pilot_heartbeat.json
[2025-11-24 12:32:59] -rw------- 1 boinc boinc      4835 Nov 24 12:32 pilotlog.txt
[2025-11-24 12:32:59] -rw------- 1 boinc boinc   8105720 Nov 24 12:32 log.47523449._004457.job.log.1
[2025-11-24 12:32:59] -rw------- 1 boinc boinc       353 Nov 24 12:32 output.list
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc       620 Nov 24 12:32 runtime_log
[2025-11-24 12:32:59] -rw------- 1 boinc boinc   9830400 Nov 24 12:32 result.tar.gz
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc      9223 Nov 24 12:32 runtime_log.err
[2025-11-24 12:32:59] -rw------- 1 boinc boinc       671 Nov 24 12:32 kprMDmU5Ig8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGdGKDmDZjQjm.diag
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc        28 Nov 24 12:32 wrapper_checkpoint.txt
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc      8192 Nov 24 12:32 boinc_mmap_file
[2025-11-24 12:32:59] -rw-r--r-- 1 boinc boinc     21128 Nov 24 12:32 stderr.txt
[2025-11-24 12:32:59] HITS file was successfully produced:
[2025-11-24 12:32:59] -rw------- 1 boinc boinc 921965334 Nov 24 12:30 shared/HITS.pool.root.1
[2025-11-24 12:32:59]  *** Contents of shared directory: ***
[2025-11-24 12:32:59] total 1309692
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc 408705388 Nov 23 20:07 ATLAS.root_0
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc     15847 Nov 23 20:07 start_atlas.sh
[2025-11-24 12:32:59] -rw-r--r-- 2 boinc boinc    590103 Nov 23 20:07 input.tar.gz
[2025-11-24 12:32:59] -rw------- 1 boinc boinc 921965334 Nov 24 12:30 HITS.pool.root.1
[2025-11-24 12:32:59] -rw------- 1 boinc boinc   9830400 Nov 24 12:32 result.tar.gz
12:33:00 (1586824): run_atlas exited; CPU time 235202.646225
12:33:00 (1586824): called boinc_finish(0)

</stderr_txt>
]]>

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