Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:08:24 (1167651): wrapper (7.7.26015): starting
14:08:24 (1167651): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 14:08:24] Arguments: --nthreads 4
[2025-11-26 14:08:24] Threads: 4
[2025-11-26 14:08:24] Checking for CVMFS
[2025-11-26 14:08:24] No cvmfs_config command found, will try listing directly
[2025-11-26 14:08:24] CVMFS is ok
[2025-11-26 14:08:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:08:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:08:24] Further information can be found at the LHC@home message board.
[2025-11-26 14:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:08:24] Checking for apptainer binary...
[2025-11-26 14:08:24] which: no apptainer in ((null))
[2025-11-26 14:08:24] apptainer is not installed, using version from CVMFS
[2025-11-26 14:08:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:08:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-26 14:08:25] apptainer works
[2025-11-26 14:08:25] Set ATHENA_PROC_NUMBER=4
[2025-11-26 14:08:25] Set ATHENA_CORE_NUMBER=4
[2025-11-26 14:08:25] Starting ATLAS job with PandaID=6893854228
[2025-11-26 14:08:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 06:07:33]  *** The last 200 lines of the pilot log: ***
[2025-11-27 06:07:33] 2025-11-27 05:05:10,262 | INFO     | monitor loop #3867: job 0:6893854228 is in state 'finished'
[2025-11-27 06:07:33] 2025-11-27 05:05:10,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,488 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 06:07:33] 2025-11-27 05:05:11,501 | INFO     | time since job start (57391s) is within the limit (172800.0s)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,511 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2719.6113906249984
[2025-11-27 06:07:33] 2025-11-27 05:05:11,536 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893854228/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,537 | INFO     | extracted standard info from prmon json
[2025-11-27 06:07:33] 2025-11-27 05:05:11,537 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 06:07:33] 2025-11-27 05:05:11,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 06:07:33] 2025-11-27 05:05:11,553 | INFO     | fitting pss+swap vs Time
[2025-11-27 06:07:33] 2025-11-27 05:05:11,554 | INFO     | sum of square deviations: 257549963855.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,578 | INFO     | sum of deviations: 757146516078.5002
[2025-11-27 06:07:33] 2025-11-27 05:05:11,578 | INFO     | mean x: 1764191196.5
[2025-11-27 06:07:33] 2025-11-27 05:05:11,578 | INFO     | mean y: 2272872.479787234
[2025-11-27 06:07:33] 2025-11-27 05:05:11,578 | INFO     | intersect: -5184104163.388719
[2025-11-27 06:07:33] 2025-11-27 05:05:11,579 | INFO     | chi2: 3.9097124609714764
[2025-11-27 06:07:33] 2025-11-27 05:05:11,580 | INFO     | sum of square deviations: 253461943020.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,603 | INFO     | sum of deviations: 925968830351.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,604 | INFO     | mean x: 1764191044.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,604 | INFO     | mean y: 2279163.5764705883
[2025-11-27 06:07:33] 2025-11-27 05:05:11,604 | INFO     | intersect: -6442814320.9293585
[2025-11-27 06:07:33] 2025-11-27 05:05:11,605 | INFO     | chi2: 2.170556330659051
[2025-11-27 06:07:33] 2025-11-27 05:05:11,605 | INFO     | current chi2=2.170556330659051 (change=44.48296767789117 %)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,606 | INFO     | sum of square deviations: 249417411372.5
[2025-11-27 06:07:33] 2025-11-27 05:05:11,628 | INFO     | sum of deviations: 940918119230.5005
[2025-11-27 06:07:33] 2025-11-27 05:05:11,628 | INFO     | mean x: 1764190891.5
[2025-11-27 06:07:33] 2025-11-27 05:05:11,629 | INFO     | mean y: 2279724.0075268815
[2025-11-27 06:07:33] 2025-11-27 05:05:11,629 | INFO     | intersect: -6653066293.976131
[2025-11-27 06:07:33] 2025-11-27 05:05:11,630 | INFO     | chi2: 2.091417889890511
[2025-11-27 06:07:33] 2025-11-27 05:05:11,630 | INFO     | current chi2=2.091417889890511 (change=3.6459980167624244 %)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,630 | INFO     | right removable region: 929
[2025-11-27 06:07:33] 2025-11-27 05:05:11,631 | INFO     | sum of square deviations: 253461943020.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,652 | INFO     | sum of deviations: 578007379044.0024
[2025-11-27 06:07:33] 2025-11-27 05:05:11,652 | INFO     | mean x: 1764191349.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,652 | INFO     | mean y: 2279543.7069518715
[2025-11-27 06:07:33] 2025-11-27 05:05:11,652 | INFO     | intersect: -4020871252.09962
[2025-11-27 06:07:33] 2025-11-27 05:05:11,653 | INFO     | chi2: 1.949059538188203
[2025-11-27 06:07:33] 2025-11-27 05:05:11,653 | INFO     | current chi2=1.949059538188203 (change=50.148263903174474 %)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,655 | INFO     | sum of square deviations: 249417411372.5
[2025-11-27 06:07:33] 2025-11-27 05:05:11,677 | INFO     | sum of deviations: 544080364060.5002
[2025-11-27 06:07:33] 2025-11-27 05:05:11,677 | INFO     | mean x: 1764191501.5
[2025-11-27 06:07:33] 2025-11-27 05:05:11,677 | INFO     | mean y: 2280822.517204301
[2025-11-27 06:07:33] 2025-11-27 05:05:11,677 | INFO     | intersect: -3846135168.678477
[2025-11-27 06:07:33] 2025-11-27 05:05:11,678 | INFO     | chi2: 1.9201496651950163
[2025-11-27 06:07:33] 2025-11-27 05:05:11,678 | INFO     | current chi2=1.9201496651950163 (change=1.483272954301878 %)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,678 | INFO     | left removable region: 20
[2025-11-27 06:07:33] 2025-11-27 05:05:11,679 | INFO     | sum of square deviations: 232900031910.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,700 | INFO     | sum of deviations: 673334582118.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,701 | INFO     | mean x: 1764191471.0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,701 | INFO     | mean y: 2289803.4510451043
[2025-11-27 06:07:33] 2025-11-27 05:05:11,701 | INFO     | intersect: -5098143705.123843
[2025-11-27 06:07:33] 2025-11-27 05:05:11,702 | INFO     | chi2: 0.07136881689994284
[2025-11-27 06:07:33] 2025-11-27 05:05:11,702 | INFO     | current memory leak: 2.89 B/s (using 909 data points, chi2=0.07)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,703 | INFO     | could have reported an average CPU frequency of 2704 MHz (35 samples)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,703 | INFO     | ..............................
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . Timing measurements:
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . get job = 0 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . initial setup = 1 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . payload setup = 10 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . stage-in = 0 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . payload execution = 57345 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . stage-out = 2 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | . log creation = 0 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,704 | INFO     | ..............................
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | 
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | job summary report
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | --------------------------------------------------
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | PanDA job id: 6893854228
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | task id: 47523449
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | errors: (none)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 06:07:33] 2025-11-27 05:05:11,954 | INFO     | pilot state: finished 
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | transexitcode: 0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | exeerrorcode: 0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | exeerrordiag: 
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | exitcode: 0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | exitmsg: OK
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | cpuconsumptiontime: 230585 s
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | nevents: 1000
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | neventsw: 0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | pid: 1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | pgrp: 1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | corecount: 4
[2025-11-27 06:07:33] 2025-11-27 05:05:11,955 | INFO     | event service: False
[2025-11-27 06:07:33] 2025-11-27 05:05:11,956 | INFO     | sizes: {0: 2284327, 7: 2284589, 11: 2284617, 57359: 2338905, 57362: 2347923, 57365: 2348007, 57373: 2348381}
[2025-11-27 06:07:33] 2025-11-27 05:05:11,956 | INFO     | --------------------------------------------------
[2025-11-27 06:07:33] 2025-11-27 05:05:11,956 | INFO     | 
[2025-11-27 06:07:33] 2025-11-27 05:05:11,956 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-27 06:07:33] 2025-11-27 05:05:11,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | job 6893854228 has completed (purged errors)
[2025-11-27 06:07:33] 2025-11-27 05:05:11,986 | INFO     | overall cleanup function is called
[2025-11-27 06:07:33] 2025-11-27 05:05:13,002 | INFO     | --- collectZombieJob: --- 10, [1192615]
[2025-11-27 06:07:33] 2025-11-27 05:05:13,002 | INFO     | zombie collector waiting for pid 1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:13,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 06:07:33] 2025-11-27 05:05:13,003 | INFO     | collected zombie processes
[2025-11-27 06:07:33] 2025-11-27 05:05:13,003 | INFO     | will attempt to kill all subprocesses of pid=1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:13,641 | INFO     | process IDs to be killed: [1192615] (in reverse order)
[2025-11-27 06:07:33] 2025-11-27 05:05:13,906 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 06:07:33] 2025-11-27 05:05:13,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 06:07:33] 2025-11-27 05:05:13,940 | INFO     | did not find any defunct processes belonging to 1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:13,971 | INFO     | did not find any defunct processes belonging to 1192615
[2025-11-27 06:07:33] 2025-11-27 05:05:13,972 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 06:07:33] 2025-11-27 05:05:13,973 | INFO     | ready for new job
[2025-11-27 06:07:33] 2025-11-27 05:05:13,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 06:07:33] 2025-11-27 05:05:13,980 | INFO     | ***************************************
[2025-11-27 06:07:33] 2025-11-27 05:05:13,980 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 06:07:33] 2025-11-27 05:05:13,980 | INFO     | ***************************************
[2025-11-27 06:07:33] 2025-11-27 05:05:13,980 | INFO     | 
[2025-11-27 06:07:33] 2025-11-27 05:05:13,989 | INFO     | architecture information:
[2025-11-27 06:07:33] 2025-11-27 05:05:13,990 | INFO     | executing command: cat /etc/os-release
[2025-11-27 06:07:33] 2025-11-27 05:05:14,014 | INFO     | cat /etc/os-release:
[2025-11-27 06:07:33] NAME="CentOS Linux"
[2025-11-27 06:07:33] VERSION="7 (Core)"
[2025-11-27 06:07:33] ID="centos"
[2025-11-27 06:07:33] ID_LIKE="rhel fedora"
[2025-11-27 06:07:33] VERSION_ID="7"
[2025-11-27 06:07:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 06:07:33] ANSI_COLOR="0;31"
[2025-11-27 06:07:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 06:07:33] HOME_URL="https://www.centos.org/"
[2025-11-27 06:07:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 06:07:33] 
[2025-11-27 06:07:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 06:07:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 06:07:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 06:07:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 06:07:33] 
[2025-11-27 06:07:33] 2025-11-27 05:05:14,015 | INFO     | ***************************************
[2025-11-27 06:07:33] 2025-11-27 05:05:14,518 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-27 06:07:33] 2025-11-27 05:05:14,540 | INFO     | sufficient remaining disk space (3287580409856 B)
[2025-11-27 06:07:33] 2025-11-27 05:05:14,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 06:07:33] 2025-11-27 05:05:14,541 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 06:07:33] 2025-11-27 05:05:14,541 | INFO     | update_server=False
[2025-11-27 06:07:33] 2025-11-27 05:05:14,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 06:07:33] 2025-11-27 05:05:14,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 06:07:33] 2025-11-27 05:05:14,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 06:07:33] 2025-11-27 05:05:14,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:07:33] 2025-11-27 05:05:14,543 | INFO     | aborting loop
[2025-11-27 06:07:33] 2025-11-27 05:05:14,811 | INFO     | all data control threads have been joined
[2025-11-27 06:07:33] 2025-11-27 05:05:15,317 | INFO     | all job control threads have been joined
[2025-11-27 06:07:33] 2025-11-27 05:05:15,547 | INFO     | [job] retrieve thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:15,550 | INFO     | [job] job monitor thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:15,606 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:15,812 | INFO     | [data] control thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:15,848 | INFO     | [job] validate thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:15,916 | INFO     | all payload control threads have been joined
[2025-11-27 06:07:33] 2025-11-27 05:05:16,012 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,323 | INFO     | [job] control thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,473 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,548 | INFO     | [data] copytool_out thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,714 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,800 | INFO     | [payload] validate_post thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:16,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 06:07:33] 2025-11-27 05:05:16,918 | INFO     | [payload] control thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:17,018 | INFO     | [payload] failed_post thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:17,019 | INFO     | [data] copytool_in thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:17,816 | INFO     | [job] queue monitor thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:18,548 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 06:07:33] 2025-11-27 05:05:45,483 | INFO     | PID=1174585 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 06:07:33] 2025-11-27 05:05:45,483 | INFO     | .. there are 6 such processes running
[2025-11-27 06:07:33] 2025-11-27 05:05:45,483 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 06:07:33] 2025-11-27 05:05:45,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 06:07:33] 2025-11-27 05:05:45,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 06:07:33] 2025-11-27 05:06:12,241 | INFO     | [monitor] cgroup control has ended
[2025-11-27 06:07:33] 2025-11-27 05:06:12,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22709540394816)>', '<ExcThread(monitor, started 22708953777920)>']
[2025-11-27 06:07:33] 2025-11-27 05:06:13,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 06:07:33] 2025-11-27 05:06:13,624 | INFO     | [monitor] control thread has ended
[2025-11-27 06:07:33] 2025-11-27 05:06:17,802 | INFO     | all workflow threads have been joined
[2025-11-27 06:07:33] 2025-11-27 05:06:17,802 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 06:07:33] 2025-11-27 05:06:17,802 | INFO     | traces error code: 0
[2025-11-27 06:07:33] 2025-11-27 05:06:17,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 06:07:33] 2025-11-27 05:06:17,949 [wrapper] ==== pilot stdout END ====
[2025-11-27 06:07:33] 2025-11-27 05:06:17,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 06:07:33] 2025-11-27 05:06:17,957 [wrapper] pilotpid: 1174585
[2025-11-27 06:07:33] 2025-11-27 05:06:17,961 [wrapper] Pilot exit status: 0
[2025-11-27 06:07:33] 2025-11-27 05:06:17,974 [wrapper] pandaids: 6893854228
[2025-11-27 06:07:33] 2025-11-27 05:06:18,160 [wrapper] cleanup supervisor_pilot 2550947 1174586
[2025-11-27 06:07:33] 2025-11-27 05:06:18,165 [wrapper] Test setup, not cleaning
[2025-11-27 06:07:33] 2025-11-27 05:06:18,169 [wrapper] apfmon messages muted
[2025-11-27 06:07:33] 2025-11-27 05:06:18,173 [wrapper] ==== wrapper stdout END ====
[2025-11-27 06:07:33] 2025-11-27 05:06:18,177 [wrapper] ==== wrapper stderr END ====
[2025-11-27 06:07:33]  *** Error codes and diagnostics ***
[2025-11-27 06:07:33]     "exeErrorCode": 0,
[2025-11-27 06:07:33]     "exeErrorDiag": "",
[2025-11-27 06:07:33]     "pilotErrorCode": 0,
[2025-11-27 06:07:33]     "pilotErrorDiag": "",
[2025-11-27 06:07:33]  *** Listing of results directory ***
[2025-11-27 06:07:33] total 1332240
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-27 06:07:33] -rwx------ 1 boinc boinc     36292 Nov 20 13:22 runpilot2-wrapper.sh
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:22 queuedata.json
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc       100 Nov 26 14:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 06:07:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 14:08 run_atlas
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc       105 Nov 26 14:08 job.xml
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc 411333237 Nov 26 14:08 EVNT.47493127._000421.pool.root.1
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc      6688 Nov 26 14:08 init_data.xml
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 14:08 start_atlas.sh
[2025-11-27 06:07:33] drwxrwx--x 2 boinc boinc      4096 Nov 26 14:08 shared
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc    590097 Nov 26 14:08 input.tar.gz
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc         0 Nov 26 14:08 boinc_lockfile
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc      2786 Nov 26 14:08 pandaJob.out
[2025-11-27 06:07:33] -rw------- 1 boinc boinc    991830 Nov 26 14:08 agis_schedconf.cvmfs.json
[2025-11-27 06:07:33] drwx------ 5 boinc boinc      4096 Nov 26 14:08 pilot3
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc       532 Nov 27 05:56 boinc_task_state.xml
[2025-11-27 06:07:33] -rw------- 1 boinc boinc 929727002 Nov 27 06:04 HITS.47523449._004203.pool.root.1
[2025-11-27 06:07:33] -rw------- 1 boinc boinc        95 Nov 27 06:04 pilot_heartbeat.json
[2025-11-27 06:07:33] -rw------- 1 boinc boinc      1042 Nov 27 06:04 memory_monitor_summary.json
[2025-11-27 06:07:33] -rw------- 1 boinc boinc   1516240 Nov 27 06:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 06:07:33] -rw------- 1 boinc boinc   1693332 Nov 27 06:05 log.47523449._004203.job.log.tgz.1
[2025-11-27 06:07:33] -rw------- 1 boinc boinc      8595 Nov 27 06:05 heartbeat.json
[2025-11-27 06:07:33] -rw------- 1 boinc boinc      4836 Nov 27 06:06 pilotlog.txt
[2025-11-27 06:07:33] -rw------- 1 boinc boinc   7919998 Nov 27 06:06 log.47523449._004203.job.log.1
[2025-11-27 06:07:33] -rw------- 1 boinc boinc       353 Nov 27 06:06 output.list
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc       620 Nov 27 06:06 runtime_log
[2025-11-27 06:07:33] -rw------- 1 boinc boinc   9635840 Nov 27 06:06 result.tar.gz
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc      9223 Nov 27 06:06 runtime_log.err
[2025-11-27 06:07:33] -rw------- 1 boinc boinc       670 Nov 27 06:06 H0uLDmUrIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtlHKDm1PHfIn.diag
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc        28 Nov 27 06:07 wrapper_checkpoint.txt
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc      8192 Nov 27 06:07 boinc_mmap_file
[2025-11-27 06:07:33] -rw-r--r-- 1 boinc boinc     21053 Nov 27 06:07 stderr.txt
[2025-11-27 06:07:33] HITS file was successfully produced:
[2025-11-27 06:07:33] -rw------- 1 boinc boinc 929727002 Nov 27 06:04 shared/HITS.pool.root.1
[2025-11-27 06:07:33]  *** Contents of shared directory: ***
[2025-11-27 06:07:33] total 1319652
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc 411333237 Nov 26 14:08 ATLAS.root_0
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc     15847 Nov 26 14:08 start_atlas.sh
[2025-11-27 06:07:33] -rw-r--r-- 2 boinc boinc    590097 Nov 26 14:08 input.tar.gz
[2025-11-27 06:07:33] -rw------- 1 boinc boinc 929727002 Nov 27 06:04 HITS.pool.root.1
[2025-11-27 06:07:33] -rw------- 1 boinc boinc   9635840 Nov 27 06:06 result.tar.gz
06:07:34 (1167651): run_atlas exited; CPU time 233742.600003
06:07:34 (1167651): called boinc_finish(0)

</stderr_txt>
]]>

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