Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:21:17 (1726655): wrapper (7.7.26015): starting
15:21:17 (1726655): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 15:21:17] Arguments: --nthreads 4
[2025-11-21 15:21:17] Threads: 4
[2025-11-21 15:21:17] Checking for CVMFS
[2025-11-21 15:21:17] No cvmfs_config command found, will try listing directly
[2025-11-21 15:21:17] CVMFS is ok
[2025-11-21 15:21:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 15:21:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 15:21:17] Further information can be found at the LHC@home message board.
[2025-11-21 15:21:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 15:21:17] Checking for apptainer binary...
[2025-11-21 15:21:17] which: no apptainer in ((null))
[2025-11-21 15:21:17] apptainer is not installed, using version from CVMFS
[2025-11-21 15:21:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 15:21:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-11-21 15:21:17] apptainer works
[2025-11-21 15:21:17] Set ATHENA_PROC_NUMBER=4
[2025-11-21 15:21:17] Set ATHENA_CORE_NUMBER=4
[2025-11-21 15:21:17] Starting ATLAS job with PandaID=6893841462
[2025-11-21 15:21:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 07:44:51]  *** The last 200 lines of the pilot log: ***
[2025-11-22 07:44:51] 2025-11-22 06:43:13,784 | INFO     | PID=1734407 has CPU usage=21.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 07:44:51] 2025-11-22 06:43:13,784 | INFO     | .. there are 7 such processes running
[2025-11-22 07:44:51] 2025-11-22 06:43:14,785 | INFO     | time since job start (58903s) is within the limit (172800.0s)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,801 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 07:44:51] 2025-11-22 06:43:15,819 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2684.9375390625
[2025-11-22 07:44:51] 2025-11-22 06:43:15,842 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/PanDA_Pilot-6893841462/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,843 | INFO     | extracted standard info from prmon json
[2025-11-22 07:44:51] 2025-11-22 06:43:15,843 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 07:44:51] 2025-11-22 06:43:15,843 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 07:44:51] 2025-11-22 06:43:15,856 | INFO     | fitting pss+swap vs Time
[2025-11-22 07:44:51] 2025-11-22 06:43:15,858 | INFO     | sum of square deviations: 278648094862.26935
[2025-11-22 07:44:51] 2025-11-22 06:43:15,876 | INFO     | sum of deviations: 808491269034.503
[2025-11-22 07:44:51] 2025-11-22 06:43:15,876 | INFO     | mean x: 1763764330.0621762
[2025-11-22 07:44:51] 2025-11-22 06:43:15,876 | INFO     | mean y: 2299847.6082901554
[2025-11-22 07:44:51] 2025-11-22 06:43:15,877 | INFO     | intersect: -5115223249.739994
[2025-11-22 07:44:51] 2025-11-22 06:43:15,878 | INFO     | chi2: 3.7837801493239827
[2025-11-22 07:44:51] 2025-11-22 06:43:15,879 | INFO     | sum of square deviations: 274339157952.25
[2025-11-22 07:44:51] 2025-11-22 06:43:15,897 | INFO     | sum of deviations: 984366659423.3752
[2025-11-22 07:44:51] 2025-11-22 06:43:15,897 | INFO     | mean x: 1763764177.5625
[2025-11-22 07:44:51] 2025-11-22 06:43:15,897 | INFO     | mean y: 2306066.4270833335
[2025-11-22 07:44:51] 2025-11-22 06:43:15,897 | INFO     | intersect: -6326322571.341087
[2025-11-22 07:44:51] 2025-11-22 06:43:15,898 | INFO     | chi2: 1.9962861978633664
[2025-11-22 07:44:51] 2025-11-22 06:43:15,898 | INFO     | current chi2=1.9962861978633664 (change=47.24095695094688 %)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,900 | INFO     | sum of square deviations: 270074873042.23038
[2025-11-22 07:44:51] 2025-11-22 06:43:15,918 | INFO     | sum of deviations: 982905226372.6859
[2025-11-22 07:44:51] 2025-11-22 06:43:15,918 | INFO     | mean x: 1763764025.062827
[2025-11-22 07:44:51] 2025-11-22 06:43:15,918 | INFO     | mean y: 2306012.405235602
[2025-11-22 07:44:51] 2025-11-22 06:43:15,918 | INFO     | intersect: -6416702386.244648
[2025-11-22 07:44:51] 2025-11-22 06:43:15,919 | INFO     | chi2: 1.967773733561436
[2025-11-22 07:44:51] 2025-11-22 06:43:15,920 | INFO     | current chi2=1.967773733561436 (change=1.4282753811776758 %)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,920 | INFO     | right removable region: 954
[2025-11-22 07:44:51] 2025-11-22 06:43:15,921 | INFO     | sum of square deviations: 274339121352.25
[2025-11-22 07:44:51] 2025-11-22 06:43:15,940 | INFO     | sum of deviations: 628297406446.8126
[2025-11-22 07:44:51] 2025-11-22 06:43:15,940 | INFO     | mean x: 1763764482.5625
[2025-11-22 07:44:51] 2025-11-22 06:43:15,940 | INFO     | mean y: 2306213.8114583334
[2025-11-22 07:44:51] 2025-11-22 06:43:15,940 | INFO     | intersect: -4037105462.2000737
[2025-11-22 07:44:51] 2025-11-22 06:43:15,941 | INFO     | chi2: 1.905621224755624
[2025-11-22 07:44:51] 2025-11-22 06:43:15,941 | INFO     | current chi2=1.905621224755624 (change=49.63710497038033 %)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,942 | INFO     | sum of square deviations: 270074799842.23038
[2025-11-22 07:44:51] 2025-11-22 06:43:15,961 | INFO     | sum of deviations: 596991621809.8535
[2025-11-22 07:44:51] 2025-11-22 06:43:15,961 | INFO     | mean x: 1763764635.062827
[2025-11-22 07:44:51] 2025-11-22 06:43:15,961 | INFO     | mean y: 2307332.8691099477
[2025-11-22 07:44:51] 2025-11-22 06:43:15,961 | INFO     | intersect: -3896437424.480058
[2025-11-22 07:44:51] 2025-11-22 06:43:15,962 | INFO     | chi2: 1.884971896281438
[2025-11-22 07:44:51] 2025-11-22 06:43:15,962 | INFO     | current chi2=1.884971896281438 (change=1.0836008859438502 %)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,963 | INFO     | left removable region: 20
[2025-11-22 07:44:51] 2025-11-22 06:43:15,964 | INFO     | sum of square deviations: 252647081389.64554
[2025-11-22 07:44:51] 2025-11-22 06:43:15,981 | INFO     | sum of deviations: 727513730317.0848
[2025-11-22 07:44:51] 2025-11-22 06:43:15,981 | INFO     | mean x: 1763764604.5642397
[2025-11-22 07:44:51] 2025-11-22 06:43:15,981 | INFO     | mean y: 2315117.1402569595
[2025-11-22 07:44:51] 2025-11-22 06:43:15,982 | INFO     | intersect: -5076559967.463657
[2025-11-22 07:44:51] 2025-11-22 06:43:15,982 | INFO     | chi2: 0.05067622377707697
[2025-11-22 07:44:51] 2025-11-22 06:43:15,983 | INFO     | current memory leak: 2.88 B/s (using 934 data points, chi2=0.05)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,983 | INFO     | could have reported an average CPU frequency of 2664 MHz (36 samples)
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | ..............................
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . Timing measurements:
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . get job = 0 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . initial setup = 1 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . payload setup = 9 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . stage-in = 0 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . payload execution = 58861 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . stage-out = 2 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | . log creation = 0 s
[2025-11-22 07:44:51] 2025-11-22 06:43:15,984 | INFO     | ..............................
[2025-11-22 07:44:51] 2025-11-22 06:43:16,069 | INFO     | 
[2025-11-22 07:44:51] 2025-11-22 06:43:16,069 | INFO     | job summary report
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | --------------------------------------------------
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | PanDA job id: 6893841462
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | task id: 47523449
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | errors: (none)
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | pilot state: finished 
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | transexitcode: 0
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | exeerrorcode: 0
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | exeerrordiag: 
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | exitcode: 0
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | exitmsg: OK
[2025-11-22 07:44:51] 2025-11-22 06:43:16,070 | INFO     | cpuconsumptiontime: 228914 s
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | nevents: 1000
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | neventsw: 0
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | pid: 1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | pgrp: 1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | corecount: 4
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | event service: False
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | sizes: {0: 2298819, 1: 2298819, 8: 2299109, 11: 2299137, 58871: 2353701, 58874: 2362719, 58876: 2362903, 58886: 2363149}
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | --------------------------------------------------
[2025-11-22 07:44:51] 2025-11-22 06:43:16,071 | INFO     | 
[2025-11-22 07:44:51] 2025-11-22 06:43:16,072 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2025-11-22 07:44:51] 2025-11-22 06:43:16,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | job 6893841462 has completed (purged errors)
[2025-11-22 07:44:51] 2025-11-22 06:43:16,100 | INFO     | overall cleanup function is called
[2025-11-22 07:44:51] 2025-11-22 06:43:17,114 | INFO     | --- collectZombieJob: --- 10, [1750794]
[2025-11-22 07:44:51] 2025-11-22 06:43:17,115 | INFO     | zombie collector waiting for pid 1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:17,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 07:44:51] 2025-11-22 06:43:17,115 | INFO     | collected zombie processes
[2025-11-22 07:44:51] 2025-11-22 06:43:17,115 | INFO     | will attempt to kill all subprocesses of pid=1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:17,794 | INFO     | process IDs to be killed: [1750794] (in reverse order)
[2025-11-22 07:44:51] 2025-11-22 06:43:18,027 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 07:44:51] 2025-11-22 06:43:18,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 07:44:51] 2025-11-22 06:43:18,057 | INFO     | did not find any defunct processes belonging to 1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:18,086 | INFO     | did not find any defunct processes belonging to 1750794
[2025-11-22 07:44:51] 2025-11-22 06:43:18,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 07:44:51] 2025-11-22 06:43:18,087 | INFO     | ready for new job
[2025-11-22 07:44:51] 2025-11-22 06:43:18,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 07:44:51] 2025-11-22 06:43:18,093 | INFO     | ***************************************
[2025-11-22 07:44:51] 2025-11-22 06:43:18,093 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 07:44:51] 2025-11-22 06:43:18,093 | INFO     | ***************************************
[2025-11-22 07:44:51] 2025-11-22 06:43:18,093 | INFO     | 
[2025-11-22 07:44:51] 2025-11-22 06:43:18,101 | INFO     | architecture information:
[2025-11-22 07:44:51] 2025-11-22 06:43:18,102 | INFO     | executing command: cat /etc/os-release
[2025-11-22 07:44:51] 2025-11-22 06:43:18,122 | INFO     | cat /etc/os-release:
[2025-11-22 07:44:51] NAME="CentOS Linux"
[2025-11-22 07:44:51] VERSION="7 (Core)"
[2025-11-22 07:44:51] ID="centos"
[2025-11-22 07:44:51] ID_LIKE="rhel fedora"
[2025-11-22 07:44:51] VERSION_ID="7"
[2025-11-22 07:44:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 07:44:51] ANSI_COLOR="0;31"
[2025-11-22 07:44:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 07:44:51] HOME_URL="https://www.centos.org/"
[2025-11-22 07:44:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 07:44:51] 
[2025-11-22 07:44:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 07:44:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 07:44:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 07:44:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 07:44:51] 
[2025-11-22 07:44:51] 2025-11-22 06:43:18,123 | INFO     | ***************************************
[2025-11-22 07:44:51] 2025-11-22 06:43:18,626 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2025-11-22 07:44:51] 2025-11-22 06:43:18,650 | INFO     | sufficient remaining disk space (3299669442560 B)
[2025-11-22 07:44:51] 2025-11-22 06:43:18,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 07:44:51] 2025-11-22 06:43:18,650 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 07:44:51] 2025-11-22 06:43:18,650 | INFO     | update_server=False
[2025-11-22 07:44:51] 2025-11-22 06:43:18,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 07:44:51] 2025-11-22 06:43:19,094 | INFO     | all payload control threads have been joined
[2025-11-22 07:44:51] 2025-11-22 06:43:19,282 | INFO     | all job control threads have been joined
[2025-11-22 07:44:51] 2025-11-22 06:43:19,459 | INFO     | all data control threads have been joined
[2025-11-22 07:44:51] 2025-11-22 06:43:19,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:44:51] 2025-11-22 06:43:19,638 | INFO     | aborting loop
[2025-11-22 07:44:51] 2025-11-22 06:43:19,656 | INFO     | [job] retrieve thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:19,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 07:44:51] 2025-11-22 06:43:19,715 | INFO     | [payload] validate_post thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,018 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,060 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,100 | INFO     | [payload] control thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,287 | INFO     | [job] control thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,427 | INFO     | [payload] failed_post thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,464 | INFO     | [data] control thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,622 | INFO     | [job] validate thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,642 | INFO     | [job] job monitor thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:20,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 07:44:51] 2025-11-22 06:43:20,711 | INFO     | [data] copytool_in thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:21,025 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:21,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 07:44:51] 2025-11-22 06:43:21,695 | INFO     | [data] copytool_out thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:22,085 | INFO     | [job] queue monitor thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:24,670 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 07:44:51] 2025-11-22 06:43:48,779 | INFO     | PID=1734407 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 07:44:51] 2025-11-22 06:43:48,779 | INFO     | .. there are 7 such processes running
[2025-11-22 07:44:51] 2025-11-22 06:43:48,779 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 07:44:51] 2025-11-22 06:43:48,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 07:44:51] 2025-11-22 06:43:48,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 07:44:51] 2025-11-22 06:44:09,196 | INFO     | [monitor] cgroup control has ended
[2025-11-22 07:44:51] 2025-11-22 06:44:10,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23053521393472)>', '<ExcThread(monitor, started 23053280962304)>']
[2025-11-22 07:44:51] 2025-11-22 06:44:10,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 07:44:51] 2025-11-22 06:44:10,885 | INFO     | [monitor] control thread has ended
[2025-11-22 07:44:51] 2025-11-22 06:44:15,024 | INFO     | all workflow threads have been joined
[2025-11-22 07:44:51] 2025-11-22 06:44:15,025 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 07:44:51] 2025-11-22 06:44:15,025 | INFO     | traces error code: 0
[2025-11-22 07:44:51] 2025-11-22 06:44:15,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 07:44:51] 2025-11-22 06:44:15,188 [wrapper] ==== pilot stdout END ====
[2025-11-22 07:44:51] 2025-11-22 06:44:15,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 07:44:51] 2025-11-22 06:44:15,196 [wrapper] pilotpid: 1734407
[2025-11-22 07:44:51] 2025-11-22 06:44:15,200 [wrapper] Pilot exit status: 0
[2025-11-22 07:44:51] 2025-11-22 06:44:15,214 [wrapper] pandaids: 6893841462
[2025-11-22 07:44:51] 2025-11-22 06:44:15,396 [wrapper] cleanup supervisor_pilot 3196074 1734408
[2025-11-22 07:44:51] 2025-11-22 06:44:15,401 [wrapper] Test setup, not cleaning
[2025-11-22 07:44:51] 2025-11-22 06:44:15,405 [wrapper] apfmon messages muted
[2025-11-22 07:44:51] 2025-11-22 06:44:15,410 [wrapper] ==== wrapper stdout END ====
[2025-11-22 07:44:51] 2025-11-22 06:44:15,414 [wrapper] ==== wrapper stderr END ====
[2025-11-22 07:44:51]  *** Error codes and diagnostics ***
[2025-11-22 07:44:51]     "exeErrorCode": 0,
[2025-11-22 07:44:51]     "exeErrorDiag": "",
[2025-11-22 07:44:51]     "pilotErrorCode": 0,
[2025-11-22 07:44:51]     "pilotErrorDiag": "",
[2025-11-22 07:44:51]  *** Listing of results directory ***
[2025-11-22 07:44:51] total 1321596
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-22 07:44:51] -rwx------ 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc       100 Nov 21 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 07:44:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 15:21 run_atlas
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc       105 Nov 21 15:21 job.xml
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc 410476731 Nov 21 15:21 EVNT.47493127._000180.pool.root.1
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc      6687 Nov 21 15:21 init_data.xml
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc     15847 Nov 21 15:21 start_atlas.sh
[2025-11-22 07:44:51] drwxrwx--x 2 boinc boinc      4096 Nov 21 15:21 shared
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc    590099 Nov 21 15:21 input.tar.gz
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc         0 Nov 21 15:21 boinc_lockfile
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc      2786 Nov 21 15:21 pandaJob.out
[2025-11-22 07:44:51] -rw------- 1 boinc boinc    989817 Nov 21 15:21 agis_schedconf.cvmfs.json
[2025-11-22 07:44:51] drwx------ 5 boinc boinc      4096 Nov 21 15:21 pilot3
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc       532 Nov 22 07:36 boinc_task_state.xml
[2025-11-22 07:44:51] -rw------- 1 boinc boinc 919432074 Nov 22 07:42 HITS.47523449._001792.pool.root.1
[2025-11-22 07:44:51] -rw------- 1 boinc boinc        95 Nov 22 07:42 pilot_heartbeat.json
[2025-11-22 07:44:51] -rw------- 1 boinc boinc      1039 Nov 22 07:43 memory_monitor_summary.json
[2025-11-22 07:44:51] -rw------- 1 boinc boinc   1526164 Nov 22 07:43 agis_ddmendpoints.agis.ALL.json
[2025-11-22 07:44:51] -rw------- 1 boinc boinc   1694815 Nov 22 07:43 log.47523449._001792.job.log.tgz.1
[2025-11-22 07:44:51] -rw------- 1 boinc boinc      8594 Nov 22 07:43 heartbeat.json
[2025-11-22 07:44:51] -rw------- 1 boinc boinc      4835 Nov 22 07:44 pilotlog.txt
[2025-11-22 07:44:51] -rw------- 1 boinc boinc   8046442 Nov 22 07:44 log.47523449._001792.job.log.1
[2025-11-22 07:44:51] -rw------- 1 boinc boinc       353 Nov 22 07:44 output.list
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc       620 Nov 22 07:44 runtime_log
[2025-11-22 07:44:51] -rw------- 1 boinc boinc   9758720 Nov 22 07:44 result.tar.gz
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc      9223 Nov 22 07:44 runtime_log.err
[2025-11-22 07:44:51] -rw------- 1 boinc boinc       670 Nov 22 07:44 omOLDmqxGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvPGKDmBRalxm.diag
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc        28 Nov 22 07:44 wrapper_checkpoint.txt
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc      8192 Nov 22 07:44 boinc_mmap_file
[2025-11-22 07:44:51] -rw-r--r-- 1 boinc boinc     21176 Nov 22 07:44 stderr.txt
[2025-11-22 07:44:51] HITS file was successfully produced:
[2025-11-22 07:44:51] -rw------- 1 boinc boinc 919432074 Nov 22 07:42 shared/HITS.pool.root.1
[2025-11-22 07:44:51]  *** Contents of shared directory: ***
[2025-11-22 07:44:51] total 1308880
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc 410476731 Nov 21 15:21 ATLAS.root_0
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc     15847 Nov 21 15:21 start_atlas.sh
[2025-11-22 07:44:51] -rw-r--r-- 2 boinc boinc    590099 Nov 21 15:21 input.tar.gz
[2025-11-22 07:44:51] -rw------- 1 boinc boinc 919432074 Nov 22 07:42 HITS.pool.root.1
[2025-11-22 07:44:51] -rw------- 1 boinc boinc   9758720 Nov 22 07:44 result.tar.gz
07:44:52 (1726655): run_atlas exited; CPU time 231971.863521
07:44:52 (1726655): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN