Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:33:11 (3255111): wrapper (7.7.26015): starting
12:33:11 (3255111): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 12:33:11] Arguments: --nthreads 4
[2025-11-24 12:33:11] Threads: 4
[2025-11-24 12:33:11] Checking for CVMFS
[2025-11-24 12:33:11] No cvmfs_config command found, will try listing directly
[2025-11-24 12:33:11] CVMFS is ok
[2025-11-24 12:33:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:33:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:33:11] Further information can be found at the LHC@home message board.
[2025-11-24 12:33:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:33:11] Checking for apptainer binary...
[2025-11-24 12:33:11] which: no apptainer in ((null))
[2025-11-24 12:33:11] apptainer is not installed, using version from CVMFS
[2025-11-24 12:33:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:33:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-11-24 12:33:12] apptainer works
[2025-11-24 12:33:12] Set ATHENA_PROC_NUMBER=4
[2025-11-24 12:33:12] Set ATHENA_CORE_NUMBER=4
[2025-11-24 12:33:12] Starting ATLAS job with PandaID=6893854891
[2025-11-24 12:33:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:33:44]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:33:44] 2025-11-25 03:31:23,642 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 04:33:44] 2025-11-25 03:31:23,660 | INFO     | time since job start (57477s) is within the limit (172800.0s)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,666 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2638.5241953124996
[2025-11-25 04:33:44] 2025-11-25 03:31:23,692 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6893854891/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,693 | INFO     | extracted standard info from prmon json
[2025-11-25 04:33:44] 2025-11-25 03:31:23,693 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:33:44] 2025-11-25 03:31:23,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:33:44] 2025-11-25 03:31:23,710 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:33:44] 2025-11-25 03:31:23,712 | INFO     | sum of square deviations: 259197401255.5
[2025-11-25 04:33:44] 2025-11-25 03:31:23,735 | INFO     | sum of deviations: 584051200026.5001
[2025-11-25 04:33:44] 2025-11-25 03:31:23,735 | INFO     | mean x: 1764012742.5
[2025-11-25 04:33:44] 2025-11-25 03:31:23,736 | INFO     | mean y: 2278381.8269639066
[2025-11-25 04:33:44] 2025-11-25 03:31:23,736 | INFO     | intersect: -3972583071.755224
[2025-11-25 04:33:44] 2025-11-25 03:31:23,737 | INFO     | chi2: 4.113674333116526
[2025-11-25 04:33:44] 2025-11-25 03:31:23,738 | INFO     | sum of square deviations: 255091919628.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,760 | INFO     | sum of deviations: 781214067450.9998
[2025-11-25 04:33:44] 2025-11-25 03:31:23,760 | INFO     | mean x: 1764012590.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,760 | INFO     | mean y: 2285698.630736393
[2025-11-25 04:33:44] 2025-11-25 03:31:23,761 | INFO     | intersect: -5399968721.965225
[2025-11-25 04:33:44] 2025-11-25 03:31:23,765 | INFO     | chi2: 1.9883447377150123
[2025-11-25 04:33:44] 2025-11-25 03:31:23,765 | INFO     | current chi2=1.9883447377150123 (change=51.66499395180271 %)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,766 | INFO     | sum of square deviations: 251030020213.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,790 | INFO     | sum of deviations: 793656517349.4999
[2025-11-25 04:33:44] 2025-11-25 03:31:23,791 | INFO     | mean x: 1764012437.5
[2025-11-25 04:33:44] 2025-11-25 03:31:23,791 | INFO     | mean y: 2286162.709227468
[2025-11-25 04:33:44] 2025-11-25 03:31:23,791 | INFO     | intersect: -5574815597.946847
[2025-11-25 04:33:44] 2025-11-25 03:31:23,792 | INFO     | chi2: 1.918895268564578
[2025-11-25 04:33:44] 2025-11-25 03:31:23,792 | INFO     | current chi2=1.918895268564578 (change=3.492828372923152 %)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,792 | INFO     | right removable region: 931
[2025-11-25 04:33:44] 2025-11-25 03:31:23,793 | INFO     | sum of square deviations: 255091919628.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,817 | INFO     | sum of deviations: 415784620520.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,818 | INFO     | mean x: 1764012895.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,818 | INFO     | mean y: 2284620.309498399
[2025-11-25 04:33:44] 2025-11-25 03:31:23,818 | INFO     | intersect: -2872951228.8289194
[2025-11-25 04:33:44] 2025-11-25 03:31:23,819 | INFO     | chi2: 2.291324073254375
[2025-11-25 04:33:44] 2025-11-25 03:31:23,819 | INFO     | current chi2=2.291324073254375 (change=44.29981841760273 %)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,820 | INFO     | sum of square deviations: 251030020213.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,843 | INFO     | sum of deviations: 400268946823.5001
[2025-11-25 04:33:44] 2025-11-25 03:31:23,844 | INFO     | mean x: 1764013047.5
[2025-11-25 04:33:44] 2025-11-25 03:31:23,844 | INFO     | mean y: 2285202.301502146
[2025-11-25 04:33:44] 2025-11-25 03:31:23,844 | INFO     | intersect: -2810444701.9012957
[2025-11-25 04:33:44] 2025-11-25 03:31:23,845 | INFO     | chi2: 2.2875771977344095
[2025-11-25 04:33:44] 2025-11-25 03:31:23,845 | INFO     | current chi2=2.2875771977344095 (change=0.16352446883010063 %)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,845 | INFO     | left removable region: 20
[2025-11-25 04:33:44] 2025-11-25 03:31:23,846 | INFO     | sum of square deviations: 234440711960.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,868 | INFO     | sum of deviations: 599814741794.0001
[2025-11-25 04:33:44] 2025-11-25 03:31:23,869 | INFO     | mean x: 1764013017.0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,869 | INFO     | mean y: 2293398.2063666303
[2025-11-25 04:33:44] 2025-11-25 03:31:23,869 | INFO     | intersect: -4510920213.3170395
[2025-11-25 04:33:44] 2025-11-25 03:31:23,870 | INFO     | chi2: 0.07731217656509344
[2025-11-25 04:33:44] 2025-11-25 03:31:23,870 | INFO     | current memory leak: 2.56 B/s (using 911 data points, chi2=0.08)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,871 | INFO     | could have reported an average CPU frequency of 2670 MHz (35 samples)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | ..............................
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . Timing measurements:
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . get job = 0 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . initial setup = 1 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . payload setup = 9 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . stage-in = 0 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . payload execution = 57429 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . stage-out = 2 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | . log creation = 0 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,872 | INFO     | ..............................
[2025-11-25 04:33:44] 2025-11-25 03:31:23,975 | INFO     | 
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | job summary report
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | --------------------------------------------------
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | PanDA job id: 6893854891
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | task id: 47523449
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | errors: (none)
[2025-11-25 04:33:44] 2025-11-25 03:31:23,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | pilot state: finished 
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | transexitcode: 0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | exeerrorcode: 0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | exeerrordiag: 
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | exitcode: 0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | exitmsg: OK
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | cpuconsumptiontime: 227477 s
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | nevents: 1000
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | neventsw: 0
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | pid: 3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | pgrp: 3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:23,979 | INFO     | corecount: 4
[2025-11-25 04:33:44] 2025-11-25 03:31:23,980 | INFO     | event service: False
[2025-11-25 04:33:44] 2025-11-25 03:31:23,980 | INFO     | sizes: {0: 2284150, 1: 2284349, 7: 2284611, 11: 2284639, 57443: 2338899, 57446: 2347917, 57449: 2348101, 57459: 2348347}
[2025-11-25 04:33:44] 2025-11-25 03:31:23,980 | INFO     | --------------------------------------------------
[2025-11-25 04:33:44] 2025-11-25 03:31:23,980 | INFO     | 
[2025-11-25 04:33:44] 2025-11-25 03:31:23,980 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,013 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,015 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:33:44] 2025-11-25 03:31:24,015 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,015 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:33:44] 2025-11-25 03:31:24,015 | INFO     | job 6893854891 has completed (purged errors)
[2025-11-25 04:33:44] 2025-11-25 03:31:24,015 | INFO     | overall cleanup function is called
[2025-11-25 04:33:44] 2025-11-25 03:31:25,032 | INFO     | --- collectZombieJob: --- 10, [3266674]
[2025-11-25 04:33:44] 2025-11-25 03:31:25,032 | INFO     | zombie collector waiting for pid 3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:25,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:33:44] 2025-11-25 03:31:25,033 | INFO     | collected zombie processes
[2025-11-25 04:33:44] 2025-11-25 03:31:25,033 | INFO     | will attempt to kill all subprocesses of pid=3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:25,850 | INFO     | process IDs to be killed: [3266674] (in reverse order)
[2025-11-25 04:33:44] 2025-11-25 03:31:26,122 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:33:44] 2025-11-25 03:31:26,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:33:44] 2025-11-25 03:31:26,155 | INFO     | did not find any defunct processes belonging to 3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:26,190 | INFO     | did not find any defunct processes belonging to 3266674
[2025-11-25 04:33:44] 2025-11-25 03:31:26,192 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:33:44] 2025-11-25 03:31:26,192 | INFO     | ready for new job
[2025-11-25 04:33:44] 2025-11-25 03:31:26,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:33:44] 2025-11-25 03:31:26,199 | INFO     | ***************************************
[2025-11-25 04:33:44] 2025-11-25 03:31:26,200 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:33:44] 2025-11-25 03:31:26,200 | INFO     | ***************************************
[2025-11-25 04:33:44] 2025-11-25 03:31:26,200 | INFO     | 
[2025-11-25 04:33:44] 2025-11-25 03:31:26,209 | INFO     | architecture information:
[2025-11-25 04:33:44] 2025-11-25 03:31:26,210 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:33:44] 2025-11-25 03:31:26,236 | INFO     | cat /etc/os-release:
[2025-11-25 04:33:44] NAME="CentOS Linux"
[2025-11-25 04:33:44] VERSION="7 (Core)"
[2025-11-25 04:33:44] ID="centos"
[2025-11-25 04:33:44] ID_LIKE="rhel fedora"
[2025-11-25 04:33:44] VERSION_ID="7"
[2025-11-25 04:33:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:33:44] ANSI_COLOR="0;31"
[2025-11-25 04:33:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:33:44] HOME_URL="https://www.centos.org/"
[2025-11-25 04:33:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:33:44] 
[2025-11-25 04:33:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:33:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:33:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:33:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:33:44] 
[2025-11-25 04:33:44] 2025-11-25 03:31:26,236 | INFO     | ***************************************
[2025-11-25 04:33:44] 2025-11-25 03:31:26,739 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-25 04:33:44] 2025-11-25 03:31:26,765 | INFO     | sufficient remaining disk space (3268965040128 B)
[2025-11-25 04:33:44] 2025-11-25 03:31:26,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:33:44] 2025-11-25 03:31:26,766 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:33:44] 2025-11-25 03:31:26,766 | INFO     | update_server=False
[2025-11-25 04:33:44] 2025-11-25 03:31:26,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:33:44] 2025-11-25 03:31:26,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:33:44] 2025-11-25 03:31:27,223 | INFO     | all job control threads have been joined
[2025-11-25 04:33:44] 2025-11-25 03:31:27,326 | INFO     | all data control threads have been joined
[2025-11-25 04:33:44] 2025-11-25 03:31:27,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:33:44] 2025-11-25 03:31:27,415 | INFO     | aborting loop
[2025-11-25 04:33:44] 2025-11-25 03:31:27,771 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:27,881 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:27,921 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,016 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,031 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,106 | INFO     | all payload control threads have been joined
[2025-11-25 04:33:44] 2025-11-25 03:31:28,227 | INFO     | [job] control thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,332 | INFO     | [data] control thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,345 | INFO     | [job] validate thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,420 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,510 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,771 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:28,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:33:44] 2025-11-25 03:31:29,112 | INFO     | [payload] control thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:29,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:33:44] 2025-11-25 03:31:29,359 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:29,987 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:33,216 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:36,867 | INFO     | job.realtimelogging is not enabled
[2025-11-25 04:33:44] 2025-11-25 03:31:37,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:33:44] 2025-11-25 03:31:55,748 | INFO     | 57480s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 04:33:44] 2025-11-25 03:31:57,741 | INFO     | PID=3259207 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 04:33:44] 2025-11-25 03:31:57,741 | INFO     | .. there are 7 such processes running
[2025-11-25 04:33:44] 2025-11-25 03:31:57,741 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:33:44] 2025-11-25 03:31:57,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:33:44] 2025-11-25 03:31:57,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:33:44] 2025-11-25 03:32:00,532 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:33:44] 2025-11-25 03:32:00,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22589360101184)>', '<ExcThread(monitor, started 22589122512640)>']
[2025-11-25 04:33:44] 2025-11-25 03:32:01,762 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:33:44] 2025-11-25 03:32:01,762 | INFO     | [monitor] control thread has ended
[2025-11-25 04:33:44] 2025-11-25 03:32:05,846 | INFO     | all workflow threads have been joined
[2025-11-25 04:33:44] 2025-11-25 03:32:05,847 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:33:44] 2025-11-25 03:32:05,847 | INFO     | traces error code: 0
[2025-11-25 04:33:44] 2025-11-25 03:32:05,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:33:44] 2025-11-25 03:32:06,021 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:33:44] 2025-11-25 03:32:06,025 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:33:44] 2025-11-25 03:32:06,029 [wrapper] pilotpid: 3259207
[2025-11-25 04:33:44] 2025-11-25 03:32:06,033 [wrapper] Pilot exit status: 0
[2025-11-25 04:33:44] 2025-11-25 03:32:06,049 [wrapper] pandaids: 6893854891
[2025-11-25 04:33:44] 2025-11-25 03:32:06,236 [wrapper] cleanup supervisor_pilot  556385 3259208
[2025-11-25 04:33:44] 2025-11-25 03:32:06,240 [wrapper] Test setup, not cleaning
[2025-11-25 04:33:44] 2025-11-25 03:32:06,245 [wrapper] apfmon messages muted
[2025-11-25 04:33:44] 2025-11-25 03:32:06,249 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:33:44] 2025-11-25 03:32:06,252 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:33:44]  *** Error codes and diagnostics ***
[2025-11-25 04:33:44]     "exeErrorCode": 0,
[2025-11-25 04:33:44]     "exeErrorDiag": "",
[2025-11-25 04:33:44]     "pilotErrorCode": 0,
[2025-11-25 04:33:44]     "pilotErrorDiag": "",
[2025-11-25 04:33:44]  *** Listing of results directory ***
[2025-11-25 04:33:44] total 1329232
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc      5112 Nov 20 13:22 queuedata.json
[2025-11-25 04:33:44] -rwx------ 1 boinc boinc     36292 Nov 20 13:23 runpilot2-wrapper.sh
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc       100 Nov 24 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:33:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 12:33 run_atlas
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc       105 Nov 24 12:33 job.xml
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc      6688 Nov 24 12:33 init_data.xml
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc 412413984 Nov 24 12:33 EVNT.47493127._000429.pool.root.1
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 12:33 start_atlas.sh
[2025-11-25 04:33:44] drwxrwx--x 2 boinc boinc      4096 Nov 24 12:33 shared
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc    590105 Nov 24 12:33 input.tar.gz
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc         0 Nov 24 12:33 boinc_lockfile
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc      2785 Nov 24 12:33 pandaJob.out
[2025-11-25 04:33:44] -rw------- 1 boinc boinc    989803 Nov 24 12:33 agis_schedconf.cvmfs.json
[2025-11-25 04:33:44] drwx------ 5 boinc boinc      4096 Nov 24 12:33 pilot3
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc       531 Nov 25 04:24 boinc_task_state.xml
[2025-11-25 04:33:44] -rw------- 1 boinc boinc 925634330 Nov 25 04:30 HITS.47523449._004288.pool.root.1
[2025-11-25 04:33:44] -rw------- 1 boinc boinc      1040 Nov 25 04:31 memory_monitor_summary.json
[2025-11-25 04:33:44] -rw------- 1 boinc boinc   1516227 Nov 25 04:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:33:44] -rw------- 1 boinc boinc   1682895 Nov 25 04:31 log.47523449._004288.job.log.tgz.1
[2025-11-25 04:33:44] -rw------- 1 boinc boinc        95 Nov 25 04:31 pilot_heartbeat.json
[2025-11-25 04:33:44] -rw------- 1 boinc boinc      8594 Nov 25 04:31 heartbeat.json
[2025-11-25 04:33:44] -rw------- 1 boinc boinc      5024 Nov 25 04:32 pilotlog.txt
[2025-11-25 04:33:44] -rw------- 1 boinc boinc   7902177 Nov 25 04:32 log.47523449._004288.job.log.1
[2025-11-25 04:33:44] -rw------- 1 boinc boinc       353 Nov 25 04:32 output.list
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc       620 Nov 25 04:32 runtime_log
[2025-11-25 04:33:44] -rw------- 1 boinc boinc   9605120 Nov 25 04:32 result.tar.gz
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc      9223 Nov 25 04:32 runtime_log.err
[2025-11-25 04:33:44] -rw------- 1 boinc boinc       670 Nov 25 04:32 g1KODmTsIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCmHKDm3qvOPm.diag
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc        28 Nov 25 04:33 wrapper_checkpoint.txt
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc      8192 Nov 25 04:33 boinc_mmap_file
[2025-11-25 04:33:44] -rw-r--r-- 1 boinc boinc     21043 Nov 25 04:33 stderr.txt
[2025-11-25 04:33:44] HITS file was successfully produced:
[2025-11-25 04:33:44] -rw------- 1 boinc boinc 925634330 Nov 25 04:30 shared/HITS.pool.root.1
[2025-11-25 04:33:44]  *** Contents of shared directory: ***
[2025-11-25 04:33:44] total 1316676
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc 412413984 Nov 24 12:33 ATLAS.root_0
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc     15847 Nov 24 12:33 start_atlas.sh
[2025-11-25 04:33:44] -rw-r--r-- 2 boinc boinc    590105 Nov 24 12:33 input.tar.gz
[2025-11-25 04:33:44] -rw------- 1 boinc boinc 925634330 Nov 25 04:30 HITS.pool.root.1
[2025-11-25 04:33:44] -rw------- 1 boinc boinc   9605120 Nov 25 04:32 result.tar.gz
04:33:45 (3255111): run_atlas exited; CPU time 230495.261919
04:33:45 (3255111): called boinc_finish(0)

</stderr_txt>
]]>

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